Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038115 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 1.5e-67 259.2 119 100.0
Actinidia16378 Actinidia chinensis HOM05D004084 ORTHO05D004662 3.8e-42 174.9 102 79.4
Dinv36171 Davidia involucrata HOM05D004084 ORTHO05D004662 3.5e-40 168.3 106 76.4
Dinv05100 Davidia involucrata HOM05D004084 ORTHO05D004662 1.5e-38 162.9 101 74.3
Rhsim13G0210600 Rhododendron simsii HOM05D004084 ORTHO05D004662 1.5e-38 162.9 103 74.8
Gohir.D13G222800 Gossypium hirsutum HOM05D004084 ORTHO05D004662 1.4e-36 156.4 103 71.8
Gohir.A13G219100 Gossypium hirsutum HOM05D004084 ORTHO05D004662 2.4e-36 155.6 103 71.8
Gorai.013G253900 Gossypium raimondii HOM05D004084 ORTHO05D004662 4.0e-36 154.8 103 70.9
Nitab4.5_0000718g0220 Nicotiana tabacum HOM05D004084 ORTHO05D004662 6.9e-36 154.1 104 72.1
Nitab4.5_0012538g0010 Nicotiana tabacum HOM05D004084 ORTHO05D004662 2.0e-35 152.5 104 72.1
Gohir.D09G106500 Gossypium hirsutum HOM05D004084 ORTHO05D004662 2.2e-34 149.1 103 68.9
Gorai.006G124000 Gossypium raimondii HOM05D004084 ORTHO05D004662 2.9e-34 148.7 103 68.0
Potri.001G275900 Populus trichocarpa HOM05D004084 ORTHO05D004662 2.9e-34 148.7 99 69.7
Thecc.09G249200 Theobroma cacao HOM05D004084 ORTHO05D004662 6.5e-34 147.5 103 68.9
Duzib168G1105 Durio zibethinus HOM05D004084 ORTHO05D004662 8.4e-34 147.1 103 66.0
Gohir.A09G110200 Gossypium hirsutum HOM05D004084 ORTHO05D004662 1.4e-33 146.4 106 67.9
Solyc11g064830.2 Solanum lycopersicum HOM05D004084 ORTHO05D004662 3.2e-33 145.2 104 69.2
Sopen01g004320 Solanum pennellii HOM05D004084 ORTHO05D004662 3.2e-33 145.2 100 72.0
Sopen11g024490 Solanum pennellii HOM05D004084 ORTHO05D004662 4.2e-33 144.8 104 68.3
Duzib150G1594 Durio zibethinus HOM05D004084 ORTHO05D004662 5.5e-33 144.4 103 68.0
PGSC0003DMG400009461 Solanum tuberosum HOM05D004084 ORTHO05D004662 5.5e-33 144.4 104 68.3
Peaxi162Scf00004g04520 Petunia axillaris HOM05D004084 ORTHO05D004662 7.1e-33 144.1 102 69.6
PGSC0003DMG400022698 Solanum tuberosum HOM05D004084 ORTHO05D004662 9.3e-33 143.7 100 71.0
Hma1.2p1_0129F.1_g060160 Hydrangea macrophylla HOM05D004084 ORTHO05D004662 1.6e-32 142.9 103 67.0
Solyc01g008810.3 Solanum lycopersicum HOM05D004084 ORTHO05D004662 2.1e-32 142.5 100 71.0
MD03G1166700 Malus domestica HOM05D004084 ORTHO05D004662 2.7e-32 142.1 87 71.3
Sabra09G0053400 Salix brachista HOM05D004084 ORTHO05D004662 2.7e-32 142.1 106 64.2
Cfa009849 Carpinus fangiana HOM05D004084 ORTHO05D004662 4.6e-32 141.4 101 67.3
CiPaw.14G113600 Carya illinoinensis HOM05D004084 ORTHO05D004662 6.0e-32 141.0 101 68.3
Prupe.4G267100 Prunus persica HOM05D004084 ORTHO05D004662 6.0e-32 141.0 104 62.5
Potri.009G070600 Populus trichocarpa HOM05D004084 ORTHO05D004662 7.9e-32 140.6 99 67.7
Nitab4.5_0000730g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 1.3e-31 139.8 104 65.4
FAN21G2250 Fragaria x ananassa HOM05D004084 ORTHO05D004662 1.1e-30 136.7 82 73.2
Manes.02G139800 Manihot esculenta HOM05D004084 ORTHO05D004662 1.1e-30 136.7 105 62.9
Atru.chr3.2757 Acer truncatum HOM05D004084 ORTHO05D004662 1.5e-30 136.3 101 64.4
Glyma.20G037400 Glycine max HOM05D004084 ORTHO05D004662 1.9e-30 136.0 102 68.6
Nitab4.5_0001500g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 2.5e-30 135.6 72 80.6
GSVIVG01037269001 Vitis vinifera HOM05D004084 ORTHO05D004662 2.5e-30 135.6 103 62.1
Atru.chr4.1902 Acer truncatum HOM05D004084 ORTHO05D004662 4.3e-30 134.8 76 77.6
Thhalv10014482m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 4.3e-30 134.8 99 59.6
HanXRQChr14g0432231 Helianthus annuus HOM05D004084 ORTHO05D004662 4.3e-30 134.8 85 72.9
Ciclev10016417m.g Citrus clementina HOM05D004084 ORTHO05D004662 5.7e-30 134.4 83 71.1
FAN25G0474 Fragaria x ananassa HOM05D004084 ORTHO05D004662 5.7e-30 134.4 82 73.2
ECA238G4029 Erigeron canadensis HOM05D004084 ORTHO05D004662 7.4e-30 134.0 83 69.9
FvH4_3g27900 Fragaria vesca HOM05D004084 ORTHO05D004662 7.4e-30 134.0 82 73.2
FAN16G3201 Fragaria x ananassa HOM05D004084 ORTHO05D004662 7.4e-30 134.0 82 73.2
Sp6g31330 Schrenkiella parvula HOM05D004084 ORTHO05D004662 7.4e-30 134.0 99 59.6
MD11G1185700 Malus domestica HOM05D004084 ORTHO05D004662 1.6e-29 132.9 79 73.4
Glyma.07G230600 Glycine max HOM05D004084 ORTHO05D004662 3.7e-29 131.7 103 64.1
RcHm_v2.0_Chr5g0050631 Rosa chinensis HOM05D004084 ORTHO05D004662 3.7e-29 131.7 105 59.0
Lsat_1_v5_gn_2_32240 Lactuca sativa HOM05D004084 ORTHO05D004662 4.8e-29 131.3 117 56.4
PGR119G1682 Punica granatum HOM05D004084 ORTHO05D004662 8.2e-29 130.6 102 61.8
PGR123G0005 Punica granatum HOM05D004084 ORTHO05D004662 8.2e-29 130.6 102 61.8
MSTRG.21348 Avicennia marina HOM05D004084 ORTHO05D004662 1.1e-28 130.2 114 56.1
A03p05580 Brassica napus HOM05D004084 ORTHO05D004662 1.1e-28 130.2 99 57.6
C03p06530 Brassica napus HOM05D004084 ORTHO05D004662 1.1e-28 130.2 99 57.6
BolC3t13153H Brassica oleracea HOM05D004084 ORTHO05D004662 1.1e-28 130.2 99 57.6
HanXRQChr06g0182501 Helianthus annuus HOM05D004084 ORTHO05D004662 1.1e-28 130.2 83 69.9
Phvul.006G030700 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 1.8e-28 129.4 104 63.5
VMungo0540G1882 Vigna mungo HOM05D004084 ORTHO05D004662 1.8e-28 129.4 105 64.8
Migut.N02373 Erythranthe guttata HOM05D004084 ORTHO05D004662 2.4e-28 129.0 117 54.7
Lalb_Chr10g0106291 Lupinus albus HOM05D004084 ORTHO05D004662 2.4e-28 129.0 106 62.3
BraA03t09895Z Brassica rapa HOM05D004084 ORTHO05D004662 4.1e-28 128.3 99 57.6
Carub.0006s1082 Capsella rubella HOM05D004084 ORTHO05D004662 4.1e-28 128.3 99 56.6
Lj1A284G15 Lonicera japonica HOM05D004084 ORTHO05D004662 6.9e-28 127.5 65 81.5
Lj6g0014777 Lotus japonicus HOM05D004084 ORTHO05D004662 6.9e-28 127.5 63 88.9
TAR623G1229 Trochodendron aralioides HOM05D004084 ORTHO05D004662 6.9e-28 127.5 83 73.5
Aa31LG3G14920 Aethionema arabicum HOM05D004084 ORTHO05D004662 9.0e-28 127.1 99 57.6
Thhalv10014461m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 9.0e-28 127.1 103 56.3
Oeu016695.1 Olea europaea HOM05D004084 ORTHO05D004662 1.2e-27 126.7 76 69.7
SGA_v2.0_scaffold8G04547 Striga asiatica HOM05D001938 ORTHO05D001965 1.2e-27 126.7 114 54.4
MSTRG.17633 Avicennia marina HOM05D004084 ORTHO05D004662 1.5e-27 126.3 115 53.0
CANSAT54G0855 Cannabis sativa HOM05D004084 ORTHO05D004662 1.5e-27 126.3 103 58.3
CARHR200800 Cardamine hirsuta HOM05D004084 ORTHO05D004662 1.5e-27 126.3 99 56.6
SGA_v2.0_scaffold29G12252 Striga asiatica HOM05D004084 ORTHO05D004662 2.0e-27 125.9 114 55.3
TWI75G0849 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 2.0e-27 125.9 102 56.9
MELO3C014562.2 Cucumis melo HOM05D004084 ORTHO05D004662 3.4e-27 125.2 77 72.7
AT5G12310 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 4.5e-27 124.8 100 57.0
CsaV3_6G039010 Cucumis sativus L. HOM05D004084 ORTHO05D004662 4.5e-27 124.8 77 72.7
Eucgr.B03731 Eucalyptus grandis HOM05D004084 ORTHO05D004662 4.5e-27 124.8 102 59.8
SGA_v2.0_scaffold310G48197 Striga asiatica HOM05D004084 ORTHO05D004662 4.5e-27 124.8 82 68.3
THA.LOC104824623 Tarenaya hassleriana HOM05D004084 ORTHO05D004662 4.5e-27 124.8 85 64.7
ClCG02G022880 Citrullus lanatus HOM05D004084 ORTHO05D004662 5.8e-27 124.4 82 70.7
Ca_03985_v3 Cicer arietinum L. HOM05D004084 ORTHO05D004662 1.3e-26 123.2 80 71.2
TWI79G0099 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 1.3e-26 123.2 99 57.6
Psat5g181240 Pisum sativum HOM05D004084 ORTHO05D004662 1.7e-26 122.9 84 67.9
PGR102G0788 Punica granatum HOM05D004084 ORTHO05D004662 2.2e-26 122.5 91 65.9
Sed0020433 Sechium edule HOM05D004084 ORTHO05D004662 2.2e-26 122.5 80 70.0
MSTRG.17516 Avicennia marina HOM05D004084 ORTHO05D004662 3.8e-26 121.7 63 77.8
Nn7g36697 Nelumbo nucifera HOM05D004084 ORTHO05D004662 3.8e-26 121.7 89 65.2
Zm00001eb140640 Zea mays HOM05D004084 ORTHO05D004662 3.8e-26 121.7 72 73.6
Migut.D00657 Erythranthe guttata HOM05D004084 ORTHO05D004662 5.0e-26 121.3 97 59.8
Peaxi162Scf00032g02420 Petunia axillaris HOM05D004084 ORTHO05D004662 8.4e-26 120.6 105 60.0
BcaB01g05145 Brassica carinata HOM05D004084 ORTHO05D004662 1.1e-25 120.2 85 62.4
A03p09480 Brassica napus HOM05D004084 ORTHO05D004662 1.1e-25 120.2 103 54.4
C03p11060 Brassica napus HOM05D004084 ORTHO05D004662 1.1e-25 120.2 85 62.4
BolC3t13575H Brassica oleracea HOM05D004084 ORTHO05D004662 1.1e-25 120.2 85 62.4
BraA03t10266Z Brassica rapa HOM05D004084 ORTHO05D004662 1.1e-25 120.2 103 54.4
arahy.Tifrunner.gnm1.ann1.X3DJVQ Arachis hypogaea HOM05D004084 ORTHO05D004662 1.4e-25 119.8 90 63.3
HPP92_006725 Vanilla planifolia HOM05D004084 ORTHO05D004662 1.4e-25 119.8 62 80.6
Cc08_g06320 Coffea canephora HOM05D004084 ORTHO05D004662 1.9e-25 119.4 111 53.2
A10p25510 Brassica napus HOM05D004084 ORTHO05D004662 3.2e-25 118.6 63 79.4
C09p64590 Brassica napus HOM05D004084 ORTHO05D004662 3.2e-25 118.6 63 79.4
BolC9t59292H Brassica oleracea HOM05D004084 ORTHO05D004662 3.2e-25 118.6 63 79.4
BraA10t44615Z Brassica rapa HOM05D004084 ORTHO05D004662 3.2e-25 118.6 63 79.4
Os01g0954400 Oryza sativa ssp. japonica HOM05D004084 ORTHO05D004662 4.2e-25 118.2 60 80.0
Sp6g24980 Schrenkiella parvula HOM05D004084 ORTHO05D004662 4.2e-25 118.2 103 54.4
Sc06g0004680 Simmondsia chinensis HOM05D004084 ORTHO05D004662 4.2e-25 118.2 89 60.7
BcaB01g04862 Brassica carinata HOM05D004084 ORTHO05D004662 7.2e-25 117.5 85 61.2
BcaNung06777 Brassica carinata HOM05D004084 ORTHO05D004662 7.2e-25 117.5 85 61.2
AT5G19430 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 1.2e-24 116.7 84 63.1
Hund07438 Selenicereus undatus HOM05D004084 ORTHO05D004662 1.2e-24 116.7 84 61.9
MBI13_g27798_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 1.6e-24 116.3 99 55.6
Cc00_g22040 Coffea canephora HOM05D004084 ORTHO05D004662 1.8e-23 112.8 88 58.0
Oeu025904.1 Olea europaea HOM05D004084 ORTHO05D004662 1.8e-23 112.8 123 50.4
Carub.0006s1777 Capsella rubella HOM05D004084 ORTHO05D004662 3.0e-23 112.1 81 60.5
Ah.04g161980 Amaranthus hybridus HOM05D004084 ORTHO05D004662 1.5e-22 109.8 60 76.7
EL10Ac4g10147 Beta vulgaris HOM05D004084 ORTHO05D004662 1.5e-22 109.8 101 54.5
unitig_8.g3650 Utricularia gibba HOM05D004084 ORTHO05D000654 1.9e-22 109.4 97 54.6
ATR0680G173 Amborella trichopoda HOM05D004084 ORTHO05D004662 3.3e-22 108.6 62 74.2
PSO339G4433 Papaver somniferum HOM05D004084 ORTHO05D004662 4.3e-22 108.2 91 58.2
Actinidia06961 Actinidia chinensis HOM05D004084 ORTHO05D004662 1.3e-21 106.7 48 91.7
CDE11G0350 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 8.2e-21 104.0 61 72.1
MBI19_g16738_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 3.4e-19 98.6 50 80.0
CSS0027788 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 5.9e-19 97.8 64 79.7
SEGI_32483 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 2.2e-18 95.9 59 66.1
AagrBONN_evm.TU.Sc2ySwM_228.3727 Anthoceros agrestis HOM05D004084 ORTHO05D004662 2.9e-18 95.5 59 62.7
Cre13.g604750 Chlamydomonas reinhardtii HOM05D004084 ORTHO05D004662 1.4e-17 93.2 64 59.4
arahy.Tifrunner.gnm1.ann1.6L2V6B Arachis hypogaea HOM05D004084 ORTHO05D004662 2.5e-17 92.4 95 56.8
SMO337G0017 Selaginella moellendorffii HOM05D004084 ORTHO05D004662 2.5e-17 92.4 60 63.3
Pp3c26_14330 Physcomitrium patens HOM05D004084 ORTHO05D004662 2.7e-16 89.0 59 62.7
AL6G30920 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 3.6e-16 88.6 44 77.3
PSO384G1598 Papaver somniferum HOM05D004084 ORTHO05D004662 4.3e-14 81.6 94 46.8
CBR_g131 Chara braunii HOM05D004084 ORTHO05D004662 7.4e-14 80.9 59 54.2
DCAR_023764 Daucus carota HOM05D000857 ORTHO05D004662 9.1e-12 73.9 34 85.3
QL01p017232 Quercus lobata HOM05D004084 ORTHO05D004662 9.1e-12 73.9 34 88.2
Pp3c4_28300 Physcomitrium patens HOM05D004084 ORTHO05D004662 1.2e-11 73.6 48 62.5
QL01p017234 Quercus lobata HOM05D004084 ORTHO05D004662 1.2e-11 73.6 80 52.5
Haze_23225 Corylus avellana HOM05D004084 ORTHO05D004662 1.5e-11 73.2 66 59.1
COL.COLO4_35674 Corchorus olitorius HOM05D004084 ORTHO05D004662 2.0e-11 72.8 69 56.5
COL.COLO4_35673 Corchorus olitorius HOM05D004084 ORTHO05D004662 3.4e-11 72.0 35 85.7
Haze_23226 Corylus avellana HOM05D004084 ORTHO05D004662 5.9e-11 71.2 36 77.8
PRCOL_00000691 Prasinoderma coloniale HOM05D004084 ORTHO05D004662 5.9e-11 71.2 65 44.6
CARHR193510 Cardamine hirsuta HOM05D004084 ORTHO05D004662 2.9e-10 68.9 45 64.4
Hund21983 Selenicereus undatus HOM05D004084 ORTHO05D004662 2.1e-08 62.8 34 73.5
EL10Ac8g18303 Beta vulgaris HOM05D004084 ORTHO05D004662 3.6e-08 62.0 76 38.2
BcaB01g05406 Brassica carinata HOM05D004084 ORTHO05D004662 3.6e-08 62.0 66 43.9
MBI19_g25614_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 3.6e-08 62.0 35 71.4
EL10Ac8g18304 Beta vulgaris HOM05D004084 ORTHO05D004662 1.4e-07 60.1 51 47.1
MBI14_g20318_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D017722 5.1e-07 58.2 35 68.6
Ah.13g074550 Amaranthus hybridus HOM05D007775 ORTHO05D009858 8.8e-07 57.4 48 50.0
SEGI_38021 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 1.1e-06 57.0 34 67.6
Nn3g16301 Nelumbo nucifera HOM05D007775 ORTHO05D009858 7.4e-06 54.3 58 41.4
CARHR193520 Cardamine hirsuta HOM05D004084 ORTHO05D004662 9.7e-06 53.9 68 42.6


User provided reference genes

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