Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038093 Camellia sinensis var. sinensis HOM05D006982 ORTHO05D008909 4.3e-36 154.1 74 100.0
Rhsim10G0045300 Rhododendron simsii HOM05D006982 ORTHO05D008909 2.1e-14 82.0 46 84.8
Dinv11484 Davidia involucrata HOM05D006982 ORTHO05D008909 1.0e-13 79.7 47 80.9
Actinidia07827 Actinidia chinensis HOM05D006982 ORTHO05D008909 3.9e-13 77.8 44 77.3
GSVIVG01011493001 Vitis vinifera HOM05D006982 ORTHO05D008909 3.9e-13 77.8 48 68.8
Hma1.2p1_1813F.1_g303760 Hydrangea macrophylla HOM05D006982 ORTHO05D008909 5.1e-13 77.4 42 85.7
Hma1.2p1_3044F.1_g332060 Hydrangea macrophylla HOM05D006982 ORTHO05D008909 5.1e-13 77.4 42 85.7
QL02p039506 Quercus lobata HOM05D006982 ORTHO05D008909 8.7e-13 76.6 43 79.1
CiPaw.03G091200 Carya illinoinensis HOM05D006982 ORTHO05D008909 1.9e-12 75.5 43 81.4
vmacro05662 Vaccinium macrocarpon HOM05D006982 ORTHO05D008909 1.9e-12 75.5 46 78.3
CANSAT64G0008 Cannabis sativa HOM05D006982 ORTHO05D008909 3.3e-12 74.7 46 71.7
Haze_14468 Corylus avellana HOM05D006982 ORTHO05D008909 5.6e-12 73.9 46 76.1
Cpa.g.sc14.148 Carica papaya HOM05D006982 ORTHO05D008909 1.3e-11 72.8 47 72.3
MELO3C014935.2 Cucumis melo HOM05D006982 ORTHO05D008909 1.3e-11 72.8 33 93.9
CsaV3_3G026330 Cucumis sativus L. HOM05D006982 ORTHO05D008909 1.3e-11 72.8 33 93.9
Phvul.004G033900 Phaseolus vulgaris HOM05D006982 ORTHO05D008909 1.3e-11 72.8 44 75.0
Potri.017G090400 Populus trichocarpa HOM05D006982 ORTHO05D008909 1.3e-11 72.8 45 75.6
VMungo0464G0061 Vigna mungo HOM05D006982 ORTHO05D008909 1.3e-11 72.8 44 75.0
TPR.G26172 Trifolium pratense HOM05D006982 ORTHO05D008909 1.6e-11 72.4 44 77.3
TPR.G3955 Trifolium pratense HOM05D006982 ORTHO05D008909 1.6e-11 72.4 44 77.3
AL5G19280 Arabidopsis lyrata HOM05D006982 ORTHO05D008909 2.1e-11 72.0 45 64.4
Carub.0005s0799 Capsella rubella HOM05D006982 ORTHO05D008909 2.1e-11 72.0 45 68.9
Thhalv10005014m.g Eutrema salsugineum HOM05D006982 ORTHO05D008909 2.1e-11 72.0 43 74.4
Sp2g17880 Schrenkiella parvula HOM05D006982 ORTHO05D008909 2.1e-11 72.0 43 74.4
Atru.chr8.390 Acer truncatum HOM05D006982 ORTHO05D008909 2.8e-11 71.6 34 94.1
Migut.H00650 Erythranthe guttata HOM05D006982 ORTHO05D008909 2.8e-11 71.6 43 74.4
Manes.01G098700 Manihot esculenta HOM05D006982 ORTHO05D008909 2.8e-11 71.6 43 76.7
Sed0004734 Sechium edule HOM05D006982 ORTHO05D008909 2.8e-11 71.6 33 93.9
AUR62042567 Chenopodium quinoa HOM05D006982 ORTHO05D008909 3.7e-11 71.2 44 75.0
BcaB07g30087 Brassica carinata HOM05D006982 ORTHO05D008909 4.8e-11 70.9 46 71.7
Eucgr.I01983 Eucalyptus grandis HOM05D006982 ORTHO05D008909 4.8e-11 70.9 38 86.8
Lj4A116T81 Lonicera japonica HOM05D006982 ORTHO05D008909 4.8e-11 70.9 49 69.4
AT3G29280 Arabidopsis thaliana HOM05D006982 ORTHO05D008909 6.2e-11 70.5 43 69.8
TAR629G3328 Trochodendron aralioides HOM05D006982 ORTHO05D008909 6.2e-11 70.5 43 76.7
Ah.10g031970 Amaranthus hybridus HOM05D006982 ORTHO05D008909 1.1e-10 69.7 33 90.9
Medtr6g013805 Medicago truncatula HOM05D006982 ORTHO05D008909 1.1e-10 69.7 45 71.1
Thecc.04G091200 Theobroma cacao HOM05D006982 ORTHO05D008909 1.1e-10 69.7 46 73.9
A02p36510 Brassica napus HOM05D006982 ORTHO05D008909 1.4e-10 69.3 43 72.1
BraA02t08647Z Brassica rapa HOM05D006982 ORTHO05D008909 1.4e-10 69.3 43 72.1
AUR62006323 Chenopodium quinoa HOM05D003441 ORTHO05D044017 1.4e-10 69.3 58 58.6
Glyma.13G058700 Glycine max HOM05D006982 ORTHO05D008909 1.4e-10 69.3 34 91.2
MSTRG.3019 Avicennia marina HOM05D006982 ORTHO05D008909 1.8e-10 68.9 41 78.0
EL10Ac2g03084 Beta vulgaris HOM05D006982 ORTHO05D008909 1.8e-10 68.9 46 71.7
BcaC03g17569 Brassica carinata HOM05D006982 ORTHO05D008909 1.8e-10 68.9 46 69.6
A06p40000 Brassica napus HOM05D006982 ORTHO05D008909 1.8e-10 68.9 45 73.3
BraA06t26915Z Brassica rapa HOM05D006982 ORTHO05D008909 1.8e-10 68.9 45 73.3
Ciclev10012958m.g Citrus clementina HOM05D006982 ORTHO05D008909 1.8e-10 68.9 38 84.2
Sc11g0004740 Simmondsia chinensis HOM05D006982 ORTHO05D008909 1.8e-10 68.9 33 90.9
Aa31LG2G3980 Aethionema arabicum HOM05D006982 ORTHO05D008909 2.4e-10 68.6 46 69.6
ClCG05G014130 Citrullus lanatus HOM05D006982 ORTHO05D008909 2.4e-10 68.6 33 87.9
C02p55480 Brassica napus HOM05D006982 ORTHO05D008909 3.1e-10 68.2 42 73.8
BolC2t11604H Brassica oleracea HOM05D006982 ORTHO05D008909 3.1e-10 68.2 42 73.8
HanXRQChr07g0199461 Helianthus annuus HOM05D006982 ORTHO05D008909 3.1e-10 68.2 46 71.7
Lj2g0023544 Lotus japonicus HOM05D006982 ORTHO05D008909 3.1e-10 68.2 34 88.2
Sabra17G0079600 Salix brachista HOM05D006982 ORTHO05D008909 3.1e-10 68.2 45 68.9
SGA_v2.0_scaffold4G02409 Striga asiatica HOM05D006982 ORTHO05D008909 3.1e-10 68.2 38 84.2
TWI60G0050 Tripterygium wilfordii HOM05D006982 ORTHO05D008909 3.1e-10 68.2 46 71.7
CARHR292480 Cardamine hirsuta HOM05D006982 ORTHO05D008909 4.0e-10 67.8 50 66.0
Duzib187G0332 Durio zibethinus HOM05D006982 ORTHO05D008909 5.3e-10 67.4 44 68.2
Nitab4.5_0001637g0060 Nicotiana tabacum HOM05D006982 ORTHO05D008909 5.3e-10 67.4 37 83.8
SalBow1G5236 Salvia bowleyana HOM05D006982 ORTHO05D008909 5.3e-10 67.4 42 73.8
Glyma.19G027800 Glycine max HOM05D006982 ORTHO05D008909 6.9e-10 67.0 34 88.2
Nitab4.5_0005196g0040 Nicotiana tabacum HOM05D006982 ORTHO05D008909 6.9e-10 67.0 37 81.1
THA.LOC104805498 Tarenaya hassleriana HOM05D006982 ORTHO05D008909 6.9e-10 67.0 42 69.0
CDE04G2259 Ceratophyllum demersum HOM05D006982 ORTHO05D008909 9.0e-10 66.6 33 87.9
Cc07_g04010 Coffea canephora HOM05D006982 ORTHO05D008909 9.0e-10 66.6 44 70.5
Nn4g23351 Nelumbo nucifera HOM05D006982 ORTHO05D008909 9.0e-10 66.6 34 85.3
Hund13166 Selenicereus undatus HOM05D006982 ORTHO05D008909 9.0e-10 66.6 43 74.4
Peaxi162Scf00451g00425 Petunia axillaris HOM05D006982 ORTHO05D008909 1.2e-09 66.2 40 75.0
arahy.Tifrunner.gnm1.ann1.84WVAW Arachis hypogaea HOM05D006982 ORTHO05D008909 1.5e-09 65.9 33 84.8
arahy.Tifrunner.gnm1.ann1.NGZQ86 Arachis hypogaea HOM05D006982 ORTHO05D008909 1.5e-09 65.9 33 84.8
CAN.G734.5 Capsicum annuum HOM05D006982 ORTHO05D008909 1.5e-09 65.9 37 78.4
Os03g0257000 Oryza sativa ssp. japonica HOM05D006982 ORTHO05D008909 2.0e-09 65.5 36 83.3
PGR004G0184 Punica granatum HOM05D006982 ORTHO05D008909 2.0e-09 65.5 48 66.7
Sopen03g016600 Solanum pennellii HOM05D006982 ORTHO05D008909 2.0e-09 65.5 37 75.7
Zm00001eb011170 Zea mays HOM05D006982 ORTHO05D008909 2.0e-09 65.5 36 80.6
Gohir.D09G010400 Gossypium hirsutum HOM05D006982 ORTHO05D008909 2.6e-09 65.1 46 71.7
Gorai.006G012000 Gossypium raimondii HOM05D006982 ORTHO05D008909 2.6e-09 65.1 46 71.7
Lsat_1_v5_gn_2_87800 Lactuca sativa HOM05D006982 ORTHO05D008909 3.4e-09 64.7 33 84.8
Lalb_Chr02g0159031 Lupinus albus HOM05D006982 ORTHO05D008909 3.4e-09 64.7 32 84.4
PSO017G1487 Papaver somniferum HOM05D006982 ORTHO05D008909 3.4e-09 64.7 34 82.4
Psat1g070160 Pisum sativum HOM05D006982 ORTHO05D008909 3.4e-09 64.7 44 68.2
SHI03749 Sapria himalayana HOM05D006982 ORTHO05D000001 3.4e-09 64.7 35 74.3
ECA238G0675 Erigeron canadensis HOM05D006982 ORTHO05D008909 4.5e-09 64.3 43 65.1
FAN02G3418 Fragaria x ananassa HOM05D006982 ORTHO05D008909 4.5e-09 64.3 44 72.7
Os03g0209700 Oryza sativa ssp. japonica HOM05D006982 ORTHO05D008909 4.5e-09 64.3 45 66.7
RcHm_v2.0_Chr2g0166491 Rosa chinensis HOM05D006982 ORTHO05D008909 4.5e-09 64.3 44 72.7
RcHm_v2.0_Chr2g0166501 Rosa chinensis HOM05D006982 ORTHO05D008909 4.5e-09 64.3 44 70.5
FvH4_6g47420 Fragaria vesca HOM05D006982 ORTHO05D008909 7.6e-09 63.5 44 70.5
FAN09G4389 Fragaria x ananassa HOM05D006982 ORTHO05D008909 7.6e-09 63.5 44 70.5
FAN14G3321 Fragaria x ananassa HOM05D006982 ORTHO05D008909 7.6e-09 63.5 44 70.5
PSO478G0313 Papaver somniferum HOM05D006982 ORTHO05D008909 7.6e-09 63.5 34 79.4
Solyc03g013250.4 Solanum lycopersicum HOM05D006982 ORTHO05D008909 7.6e-09 63.5 37 73.0
unitig_899.g15159 Utricularia gibba HOM05D006982 ORTHO05D008909 7.6e-09 63.5 37 81.1
Aqoxy3G00454 Aquilegia oxysepala HOM05D006982 ORTHO05D008909 1.7e-08 62.4 33 84.8
BolC7t44339H Brassica oleracea HOM05D006982 ORTHO05D008909 2.2e-08 62.0 32 87.5
Gohir.A09G011401 Gossypium hirsutum HOM05D006982 ORTHO05D008909 8.4e-08 60.1 51 62.7
FAN05G3993 Fragaria x ananassa HOM05D006982 ORTHO05D008909 2.5e-07 58.5 36 77.8
MD09G1061600 Malus domestica HOM05D006982 ORTHO05D008909 7.1e-07 57.0 47 61.7
ATR0064G116 Amborella trichopoda HOM05D006982 ORTHO05D008909 1.6e-06 55.8 32 84.4
Prupe.3G258600 Prunus persica HOM05D006982 ORTHO05D008909 2.7e-06 55.1 38 73.7


User provided reference genes

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