Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038083 Camellia sinensis var. sinensis HOM05D006243 ORTHO05D007688 2.7e-242 841.6 455 100.0
Rhsim10G0177000 Rhododendron simsii HOM05D006243 ORTHO05D007688 5.3e-177 624.8 456 77.9
vmacro07692 Vaccinium macrocarpon HOM05D006243 ORTHO05D007688 9.3e-174 614.0 488 70.5
GSVIVG01030779001 Vitis vinifera HOM05D006243 ORTHO05D007688 3.8e-167 592.0 451 75.2
TAR629G1693 Trochodendron aralioides HOM05D006243 ORTHO05D007688 2.6e-160 569.3 465 71.8
Actinidia06497 Actinidia chinensis HOM05D006243 ORTHO05D007688 2.2e-159 566.2 382 83.8
Cfa007817 Carpinus fangiana HOM05D006243 ORTHO05D007688 2.3e-156 556.2 461 71.8
CiPaw.03G071500 Carya illinoinensis HOM05D006243 ORTHO05D007688 1.1e-155 553.9 443 73.4
Ciclev10011587m.g Citrus clementina HOM05D006243 ORTHO05D007688 2.5e-155 552.7 452 72.8
Potri.017G129100 Populus trichocarpa HOM05D006243 ORTHO05D007688 1.3e-154 550.4 459 69.7
Haze_14258 Corylus avellana HOM05D006243 ORTHO05D007688 1.4e-153 547.0 461 71.6
Atru.chr1.1900 Acer truncatum HOM05D006243 ORTHO05D007688 7.7e-152 541.2 453 71.5
Manes.01G117900 Manihot esculenta HOM05D006243 ORTHO05D007688 3.8e-151 538.9 460 69.8
Thecc.04G115200 Theobroma cacao HOM05D006243 ORTHO05D007688 1.6e-149 533.5 446 71.7
Sabra17G0107600 Salix brachista HOM05D006243 ORTHO05D007688 2.7e-149 532.7 466 69.1
Cpa.g.sc67.47 Carica papaya HOM05D006243 ORTHO05D007688 2.0e-147 526.6 458 68.8
Nn4g24254 Nelumbo nucifera HOM05D006243 ORTHO05D007688 9.7e-147 524.2 463 68.3
TWI53G0799 Tripterygium wilfordii HOM05D006243 ORTHO05D007688 1.4e-145 520.4 458 69.0
CANSAT64G2718 Cannabis sativa HOM05D006243 ORTHO05D007688 1.8e-145 520.0 455 68.6
Prupe.3G161300 Prunus persica HOM05D006243 ORTHO05D007688 6.9e-145 518.1 454 69.4
Duzib133G1335 Durio zibethinus HOM05D006243 ORTHO05D007688 9.1e-145 517.7 459 68.4
MD09G1263800 Malus domestica HOM05D006243 ORTHO05D007688 2.0e-144 516.5 455 69.0
Gohir.A07G078300 Gossypium hirsutum HOM05D006243 ORTHO05D007688 1.3e-143 513.8 454 70.0
Gorai.001G088700 Gossypium raimondii HOM05D006243 ORTHO05D007688 9.4e-142 507.7 454 69.6
Cc07_g13520 Coffea canephora HOM05D006243 ORTHO05D007688 2.1e-141 506.5 419 70.6
RcHm_v2.0_Chr3g0493131 Rosa chinensis HOM05D006243 ORTHO05D007688 2.3e-140 503.1 455 68.1
Eucgr.J01597 Eucalyptus grandis HOM05D006243 ORTHO05D007688 6.7e-140 501.5 458 67.0
Gohir.D07G083100 Gossypium hirsutum HOM05D006243 ORTHO05D007688 6.7e-140 501.5 454 68.9
Solyc11g011170.2 Solanum lycopersicum HOM05D006243 ORTHO05D007688 6.7e-140 501.5 427 70.0
MD17G1259100 Malus domestica HOM05D006243 ORTHO05D007688 1.1e-139 500.7 462 67.5
Oeu012257.1 Olea europaea HOM05D006243 ORTHO05D007688 2.0e-139 500.0 417 70.7
Sopen11g005930 Solanum pennellii HOM05D006243 ORTHO05D007688 2.0e-139 500.0 427 69.8
FAN19G0552 Fragaria x ananassa HOM05D006243 ORTHO05D007688 3.3e-139 499.2 456 66.9
PGSC0003DMG402015686 Solanum tuberosum HOM05D006243 ORTHO05D007688 4.4e-139 498.8 427 69.8
FvH4_1g28740 Fragaria vesca HOM05D006243 ORTHO05D007688 9.7e-139 497.7 456 66.9
FAN28G0309 Fragaria x ananassa HOM05D006243 ORTHO05D007688 9.7e-139 497.7 456 66.7
FAN26G0580 Fragaria x ananassa HOM05D006243 ORTHO05D007688 1.1e-137 494.2 456 65.8
DCAR_014173 Daucus carota HOM05D006243 ORTHO05D007688 1.8e-137 493.4 425 70.6
SalBow3G2874 Salvia bowleyana HOM05D006243 ORTHO05D007688 1.8e-137 493.4 429 68.3
CAN.G222.23 Capsicum annuum HOM05D006243 ORTHO05D007688 3.1e-137 492.7 425 68.9
Peaxi162Scf00305g00613 Petunia axillaris HOM05D006243 ORTHO05D007688 4.1e-137 492.3 427 68.6
ECA246G3278 Erigeron canadensis HOM05D006243 ORTHO05D007688 2.2e-135 486.5 435 66.0
Oeu032326.2 Olea europaea HOM05D006243 ORTHO05D007688 2.5e-134 483.0 407 70.8
MSTRG.23392 Avicennia marina HOM05D006243 ORTHO05D007688 5.5e-134 481.9 433 67.9
Lsat_1_v5_gn_3_64500 Lactuca sativa HOM05D006243 ORTHO05D007688 6.7e-132 474.9 451 61.9
ClCG05G011500 Citrullus lanatus HOM05D006243 ORTHO05D007688 2.6e-131 473.0 453 65.1
HanXRQChr13g0418351 Helianthus annuus HOM05D006243 ORTHO05D007688 5.7e-131 471.9 437 66.1
Lj4A263G87 Lonicera japonica HOM05D006243 ORTHO05D007688 1.4e-129 467.2 334 81.7
Lalb_Chr10g0104381 Lupinus albus HOM05D006243 ORTHO05D007688 4.1e-129 465.7 442 65.4
MELO3C020192.2 Cucumis melo HOM05D006243 ORTHO05D007688 7.0e-129 464.9 453 64.2
Sc10g0004760 Simmondsia chinensis HOM05D006243 ORTHO05D007688 1.2e-128 464.2 457 64.3
Aqoxy3G00051 Aquilegia oxysepala HOM05D006243 ORTHO05D007688 1.0e-127 461.1 459 63.4
PSO017G3733 Papaver somniferum HOM05D006243 ORTHO05D007688 1.0e-127 461.1 458 62.0
CsaV3_3G020810 Cucumis sativus L. HOM05D006243 ORTHO05D007688 3.8e-127 459.1 404 68.3
COL.COLO4_10159 Corchorus olitorius HOM05D006243 ORTHO05D007688 1.9e-126 456.8 496 59.3
AUR62038703 Chenopodium quinoa HOM05D006243 ORTHO05D007688 7.2e-126 454.9 457 62.4
ATR0317G069 Amborella trichopoda HOM05D006243 ORTHO05D007688 1.6e-125 453.8 453 61.4
Glyma.02G245300 Glycine max HOM05D006243 ORTHO05D007688 3.6e-125 452.6 446 61.2
EL10Ac2g03168 Beta vulgaris HOM05D006243 ORTHO05D007688 8.0e-125 451.4 439 63.3
Migut.H02264 Erythranthe guttata HOM05D006243 ORTHO05D007688 4.0e-124 449.1 415 66.7
AUR62018213 Chenopodium quinoa HOM05D006243 ORTHO05D007688 2.0e-123 446.8 457 61.7
Nitab4.5_0000201g0240 Nicotiana tabacum HOM05D006243 ORTHO05D007688 7.5e-123 444.9 418 64.8
PSO478G0940 Papaver somniferum HOM05D006243 ORTHO05D007688 7.5e-123 444.9 458 60.7
arahy.Tifrunner.gnm1.ann1.Y3W4B5 Arachis hypogaea HOM05D006243 ORTHO05D007688 1.3e-122 444.1 327 79.5
Phvul.008G235800 Phaseolus vulgaris HOM05D006243 ORTHO05D007688 8.3e-122 441.4 455 60.4
LjContig00141g0011202 Lotus japonicus HOM05D006243 ORTHO05D007688 4.1e-121 439.1 443 60.3
Aa31LG2G3000 Aethionema arabicum HOM05D006243 ORTHO05D007688 1.6e-120 437.2 450 62.9
BcaB03g15275 Brassica carinata HOM05D006243 ORTHO05D007688 4.5e-120 435.6 370 73.0
THA.LOC104805617 Tarenaya hassleriana HOM05D006243 ORTHO05D007688 1.3e-119 434.1 375 71.7
Sp5g21350 Schrenkiella parvula HOM05D006243 ORTHO05D007688 1.7e-119 433.7 379 72.0
BraA07t30960Z Brassica rapa HOM05D006243 ORTHO05D007688 1.9e-118 430.3 445 65.6
Medtr5g078290 Medicago truncatula HOM05D006243 ORTHO05D007688 1.2e-117 427.6 442 60.4
A07p33290 Brassica napus HOM05D006243 ORTHO05D007688 6.1e-117 425.2 446 65.5
AT1G66330 Arabidopsis thaliana HOM05D006243 ORTHO05D007688 8.0e-117 424.9 378 71.4
CARHR058210 Cardamine hirsuta HOM05D006243 ORTHO05D007688 1.4e-116 424.1 366 72.4
AL2G24050 Arabidopsis lyrata HOM05D006243 ORTHO05D007688 4.0e-116 422.5 377 71.4
Carub.0002s1234 Capsella rubella HOM05D006243 ORTHO05D007688 4.0e-116 422.5 382 70.4
BcaC08g46068 Brassica carinata HOM05D006243 ORTHO05D007688 5.2e-116 422.2 376 72.3
BraA02t06418Z Brassica rapa HOM05D006243 ORTHO05D007688 1.5e-115 420.6 378 70.4
Lalb_Chr17g0346141 Lupinus albus HOM05D006243 ORTHO05D007688 1.5e-115 420.6 376 67.6
BcaB05g24167 Brassica carinata HOM05D006243 ORTHO05D007688 2.0e-115 420.2 389 69.2
C06p39620 Brassica napus HOM05D006243 ORTHO05D007688 1.3e-114 417.5 377 72.1
BolC6t39055H Brassica oleracea HOM05D006243 ORTHO05D007688 1.3e-114 417.5 377 72.1
Os05g0148700 Oryza sativa ssp. japonica HOM05D006243 ORTHO05D007688 1.7e-114 417.2 390 65.1
BcaC03g14742 Brassica carinata HOM05D006243 ORTHO05D007688 4.9e-114 415.6 378 69.8
BolC2t08324H Brassica oleracea HOM05D006243 ORTHO05D007688 4.9e-114 415.6 378 69.8
C02p21930 Brassica napus HOM05D006243 ORTHO05D007688 5.9e-112 408.7 355 72.1
A02p13590 Brassica napus HOM05D006243 ORTHO05D007688 1.7e-111 407.1 355 72.7
PGR004G2672 Punica granatum HOM05D006243 ORTHO05D007688 2.5e-110 403.3 332 75.0
Zm00001eb165460 Zea mays HOM05D006243 ORTHO05D007688 2.5e-110 403.3 376 65.4
HPP92_027416 Vanilla planifolia HOM05D006243 ORTHO05D007688 1.4e-108 397.5 465 56.3
CDE04G1800 Ceratophyllum demersum HOM05D006243 ORTHO05D007688 3.0e-108 396.4 321 73.2
Nitab4.5_0009518g0020 Nicotiana tabacum HOM05D006243 ORTHO05D007688 3.0e-108 396.4 418 60.5
SGA_v2.0_scaffold108G30955 Striga asiatica HOM05D006243 ORTHO05D007688 5.4e-105 385.6 431 60.1
TPR.G8275 Trifolium pratense HOM05D006243 ORTHO05D007688 7.0e-105 385.2 292 71.2
arahy.Tifrunner.gnm1.ann1.SFD8TD Arachis hypogaea HOM05D006243 ORTHO05D007688 7.8e-104 381.7 321 72.9
Hund13108 Selenicereus undatus HOM05D006243 ORTHO05D007688 4.0e-100 369.4 245 79.6
Glyma.14G215400 Glycine max HOM05D006243 ORTHO05D007688 2.6e-99 366.7 403 59.6
Sed0013436 Sechium edule HOM05D006243 ORTHO05D007688 1.7e-98 364.0 382 61.8
SEGI_26344 Sequoiadendron giganteum HOM05D006243 ORTHO05D007688 9.2e-97 358.2 398 58.8
Ca_05826_v3 Cicer arietinum L. HOM05D006243 ORTHO05D007688 3.5e-96 356.3 438 54.3
unitig_736.g22596 Utricularia gibba HOM05D006243 ORTHO05D007688 6.0e-96 355.5 254 74.0
Thhalv10018612m.g Eutrema salsugineum HOM05D006243 ORTHO05D007688 4.4e-91 339.3 303 71.6
Dinv28209 Davidia involucrata HOM05D006243 ORTHO05D007688 6.4e-90 335.5 277 74.0
Actinidia17213 Actinidia chinensis HOM05D006243 ORTHO05D007688 8.4e-82 308.5 195 83.1
Ah.10g032360 Amaranthus hybridus HOM05D006243 ORTHO05D007688 2.9e-74 283.5 438 42.2
Psat2g047960 Pisum sativum HOM05D006243 ORTHO05D007688 1.8e-68 264.2 348 54.0
MD17G1258600 Malus domestica HOM05D006243 ORTHO05D007688 1.2e-67 261.5 228 67.5
QL02p058075 Quercus lobata HOM05D006243 ORTHO05D007688 9.9e-59 231.9 238 63.9
VMungo0647G1427 Vigna mungo HOM05D006243 ORTHO05D007688 8.4e-58 228.8 326 50.0
Mapoly0055s0114 Marchantia polymorpha HOM05D006243 ORTHO05D007688 1.6e-56 224.6 308 49.4
Pp3c5_8230 Physcomitrium patens HOM05D006243 ORTHO05D007688 5.1e-55 219.5 325 50.5
AagrBONN_evm.TU.Sc2ySwM_117.2468 Anthoceros agrestis HOM05D006243 ORTHO05D007688 4.3e-54 216.5 307 47.9
Pp3c16_1710 Physcomitrium patens HOM05D006243 ORTHO05D007688 7.4e-54 215.7 323 48.9
VMungo0647G1521 Vigna mungo HOM05D006243 ORTHO05D007688 2.6e-51 207.2 117 89.7
Pp3c25_7980 Physcomitrium patens HOM05D006243 ORTHO05D007688 1.7e-50 204.5 225 52.0
Lsat_1_v5_gn_2_20381 Lactuca sativa HOM05D006243 ORTHO05D007688 4.2e-41 173.3 122 74.6
SMO238G0021 Selaginella moellendorffii HOM05D006243 ORTHO05D007688 1.0e-39 168.7 245 42.0
CBR_g27960 Chara braunii HOM05D006243 ORTHO05D007688 1.3e-34 151.8 207 42.5
Actinidia17214 Actinidia chinensis HOM05D006243 ORTHO05D007688 1.6e-32 144.8 160 61.2
RcHm_v2.0_Chr7g0216651 Rosa chinensis HOM05D006243 ORTHO05D007688 1.1e-30 138.7 77 93.5
Lsat_1_v5_gn_9_50281 Lactuca sativa HOM05D006243 ORTHO05D007688 5.9e-19 99.8 60 83.3
Hund13037 Selenicereus undatus HOM05D006243 ORTHO05D007688 8.0e-16 89.4 164 33.5
Lsat_1_v5_gn_9_64341 Lactuca sativa HOM05D000326 ORTHO05D000312 2.4e-12 77.8 163 36.8
unitig_736.g22595 Utricularia gibba HOM05D006243 ORTHO05D007688 5.5e-09 66.6 140 31.4


User provided reference genes

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