Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038067 Camellia sinensis var. sinensis HOM05D004984 ORTHO05D006508 6.7e-265 916.8 457 100.0
Actinidia02410 Actinidia chinensis HOM05D004984 ORTHO05D006508 3.1e-225 785.0 450 85.6
Dinv08970 Davidia involucrata HOM05D004984 ORTHO05D006508 5.8e-224 780.8 452 84.1
Dinv16030 Davidia involucrata HOM05D004984 ORTHO05D006508 2.4e-222 775.4 450 85.1
Hma1.2p1_0435F.1_g152620 Hydrangea macrophylla HOM05D004984 ORTHO05D006508 1.2e-221 773.1 448 84.8
Thecc.02G125200 Theobroma cacao HOM05D004984 ORTHO05D006508 9.5e-219 763.5 448 82.4
vmacro01898 Vaccinium macrocarpon HOM05D004984 ORTHO05D006508 1.8e-217 759.2 448 82.4
vmacro23356 Vaccinium macrocarpon HOM05D004984 ORTHO05D006508 1.8e-217 759.2 448 82.4
Duzib132G1162 Durio zibethinus HOM05D004984 ORTHO05D006508 3.2e-214 748.4 445 80.7
Lj5A225T68 Lonicera japonica HOM05D004984 ORTHO05D006508 9.2e-214 746.9 461 80.9
RcHm_v2.0_Chr6g0269501 Rosa chinensis HOM05D004984 ORTHO05D006508 9.2e-214 746.9 453 80.1
Gorai.005G227400 Gossypium raimondii HOM05D004984 ORTHO05D006508 2.1e-213 745.7 445 80.9
Gohir.A03G178800 Gossypium hirsutum HOM05D004984 ORTHO05D006508 3.5e-213 745.0 445 80.7
Gohir.D02G202500 Gossypium hirsutum HOM05D004984 ORTHO05D006508 3.5e-213 745.0 445 80.9
Duzib052G0292 Durio zibethinus HOM05D004984 ORTHO05D006508 6.0e-213 744.2 445 80.9
Prupe.8G074900 Prunus persica HOM05D004984 ORTHO05D006508 1.0e-212 743.4 453 80.6
FAN27G1475 Fragaria x ananassa HOM05D004984 ORTHO05D006508 1.7e-212 742.7 449 80.2
Cc02_g20610 Coffea canephora HOM05D004984 ORTHO05D006508 2.3e-212 742.3 451 81.2
GSVIVG01038516001 Vitis vinifera HOM05D004984 ORTHO05D006508 2.3e-212 742.3 429 82.5
ClCG10G009790 Citrullus lanatus HOM05D004984 ORTHO05D006508 3.0e-212 741.9 453 79.9
FAN20G2814 Fragaria x ananassa HOM05D004984 ORTHO05D006508 3.9e-212 741.5 449 80.0
FvH4_2g11180 Fragaria vesca HOM05D004984 ORTHO05D006508 6.6e-212 740.7 453 79.9
TAR381G0604 Trochodendron aralioides HOM05D004984 ORTHO05D006508 1.5e-211 739.6 446 80.9
Atru.chr6.1348 Acer truncatum HOM05D004984 ORTHO05D006508 2.5e-211 738.8 445 80.7
Peaxi162Scf00152g00730 Petunia axillaris HOM05D004984 ORTHO05D006508 3.3e-211 738.4 455 78.9
PGSC0003DMG402029578 Solanum tuberosum HOM05D004984 ORTHO05D006508 4.3e-211 738.0 455 78.7
CAN.G908.9 Capsicum annuum HOM05D004984 ORTHO05D006508 1.6e-210 736.1 455 77.6
CsaV3_4G014670 Cucumis sativus L. HOM05D004984 ORTHO05D006508 2.8e-210 735.3 446 81.2
Oeu059891.1 Olea europaea HOM05D004984 ORTHO05D006508 2.8e-210 735.3 452 80.3
FAN15G1055 Fragaria x ananassa HOM05D004984 ORTHO05D006508 3.6e-210 734.9 453 79.2
MD05G1049600 Malus domestica HOM05D004984 ORTHO05D006508 3.6e-210 734.9 445 81.1
MD10G1056700 Malus domestica HOM05D004984 ORTHO05D006508 4.7e-210 734.6 445 80.9
MELO3C018046.2 Cucumis melo HOM05D004984 ORTHO05D006508 8.1e-210 733.8 446 80.5
TAR376G0949 Trochodendron aralioides HOM05D004984 ORTHO05D006508 8.1e-210 733.8 447 80.1
Sed0006594 Sechium edule HOM05D004984 ORTHO05D006508 1.1e-209 733.4 449 80.2
Gohir.D04G158100 Gossypium hirsutum HOM05D004984 ORTHO05D006508 1.5e-208 729.6 441 79.4
TAR625G1028 Trochodendron aralioides HOM05D004984 ORTHO05D006508 2.0e-208 729.2 444 80.9
Gohir.A04G116400 Gossypium hirsutum HOM05D004984 ORTHO05D006508 3.4e-208 728.4 441 79.1
Sed0007187 Sechium edule HOM05D004984 ORTHO05D006508 3.4e-208 728.4 446 80.0
ECA234G3445 Erigeron canadensis HOM05D004984 ORTHO05D006508 5.8e-208 727.6 431 81.4
Eucgr.I02584 Eucalyptus grandis HOM05D004984 ORTHO05D006508 7.6e-208 727.2 443 80.4
Lsat_1_v5_gn_5_110941 Lactuca sativa HOM05D004984 ORTHO05D006508 1.3e-207 726.5 452 80.3
MSTRG.23114 Avicennia marina HOM05D004984 ORTHO05D006508 3.8e-207 724.9 451 79.2
Gorai.012G145500 Gossypium raimondii HOM05D004984 ORTHO05D006508 3.8e-207 724.9 441 79.1
QL11p026578 Quercus lobata HOM05D004984 ORTHO05D006508 1.1e-206 723.4 431 81.2
PSO541G0041 Papaver somniferum HOM05D004984 ORTHO05D006508 2.4e-206 722.2 453 77.7
Sopen08g022650 Solanum pennellii HOM05D004984 ORTHO05D006508 3.2e-206 721.8 440 78.6
PSO532G0022 Papaver somniferum HOM05D004984 ORTHO05D006508 1.2e-205 719.9 453 77.7
PGR142G0200 Punica granatum HOM05D004984 ORTHO05D006508 2.1e-205 719.2 463 76.2
HanXRQChr10g0291211 Helianthus annuus HOM05D004984 ORTHO05D006508 1.0e-204 716.8 452 77.9
THA.LOC104808837 Tarenaya hassleriana HOM05D004984 ORTHO05D006508 1.3e-204 716.5 431 79.6
CiPaw.05G027100 Carya illinoinensis HOM05D004984 ORTHO05D006508 1.1e-203 713.4 448 78.3
SalBow6G5880 Salvia bowleyana HOM05D004984 ORTHO05D006508 1.5e-203 713.0 448 76.8
BcaC06g35862 Brassica carinata HOM05D004984 ORTHO05D006508 4.3e-203 711.4 439 78.6
BolC7t41481H Brassica oleracea HOM05D004984 ORTHO05D006508 4.3e-203 711.4 439 78.6
C07p10310 Brassica napus HOM05D004984 ORTHO05D006508 9.6e-203 710.3 439 78.4
A07p06740 Brassica napus HOM05D004984 ORTHO05D006508 2.8e-202 708.8 439 78.1
Ciclev10028425m.g Citrus clementina HOM05D004984 ORTHO05D006508 2.8e-202 708.8 446 78.9
BraA07t28467Z Brassica rapa HOM05D004984 ORTHO05D006508 4.8e-202 708.0 439 78.1
BcaB06g26775 Brassica carinata HOM05D004984 ORTHO05D006508 6.2e-202 707.6 439 78.1
Thhalv10002529m.g Eutrema salsugineum HOM05D004984 ORTHO05D006508 8.1e-202 707.2 422 80.3
Aa31sc202G40 Aethionema arabicum HOM05D004984 ORTHO05D006508 1.4e-201 706.4 444 77.9
Manes.07G046600 Manihot esculenta HOM05D004984 ORTHO05D006508 1.8e-201 706.1 444 76.1
Migut.B00524 Erythranthe guttata HOM05D004984 ORTHO05D006508 2.0e-200 702.6 453 77.9
Hund00395 Selenicereus undatus HOM05D004984 ORTHO05D006508 2.0e-200 702.6 447 77.2
Aqoxy6G00646 Aquilegia oxysepala HOM05D004984 ORTHO05D006508 3.4e-200 701.8 450 75.6
ATR0800G083 Amborella trichopoda HOM05D004984 ORTHO05D006508 5.8e-200 701.0 455 74.9
AL3G42000 Arabidopsis lyrata HOM05D004984 ORTHO05D006508 5.8e-200 701.0 425 80.2
Sp6g01600 Schrenkiella parvula HOM05D004984 ORTHO05D006508 1.3e-199 699.9 430 78.8
HanXRQChr01g0009891 Helianthus annuus HOM05D004984 ORTHO05D006508 1.7e-199 699.5 427 80.6
Nn1g05667 Nelumbo nucifera HOM05D004984 ORTHO05D006508 1.7e-199 699.5 430 78.8
SGA_v2.0_scaffold219G42554 Striga asiatica HOM05D004984 ORTHO05D006508 1.7e-199 699.5 453 75.9
CARHR102180 Cardamine hirsuta HOM05D004984 ORTHO05D006508 2.2e-199 699.1 423 80.6
THA.LOC104815368 Tarenaya hassleriana HOM05D004984 ORTHO05D006508 8.4e-199 697.2 454 75.3
DCAR_029278 Daucus carota HOM05D004984 ORTHO05D006508 2.4e-198 695.7 450 78.0
Potri.009G079600 Populus trichocarpa HOM05D004984 ORTHO05D006508 2.4e-198 695.7 447 77.2
Lsat_1_v5_gn_7_82880 Lactuca sativa HOM05D004984 ORTHO05D006508 1.6e-197 693.0 421 79.6
Carub.0003s2601 Capsella rubella HOM05D004984 ORTHO05D006508 2.7e-197 692.2 425 79.1
VMungo0540G0195 Vigna mungo HOM05D004984 ORTHO05D006508 2.7e-197 692.2 447 75.6
CDE06G1646 Ceratophyllum demersum HOM05D004984 ORTHO05D006508 6.0e-197 691.0 445 74.6
Glyma.15G060000 Glycine max HOM05D004984 ORTHO05D006508 8.7e-196 687.2 459 75.4
Potri.001G285300 Populus trichocarpa HOM05D004984 ORTHO05D006508 5.6e-195 684.5 439 76.1
Psat1g212920 Pisum sativum HOM05D004984 ORTHO05D006508 2.8e-194 682.2 456 75.2
Sabra09G0061600 Salix brachista HOM05D004984 ORTHO05D006508 2.8e-194 682.2 466 73.8
Phvul.006G199900 Phaseolus vulgaris HOM05D004984 ORTHO05D006508 3.6e-194 681.8 459 73.0
Glyma.13G254800 Glycine max HOM05D004984 ORTHO05D006508 4.8e-194 681.4 459 74.5
CiPaw.06G160700 Carya illinoinensis HOM05D004984 ORTHO05D006508 6.9e-193 677.6 447 75.6
TWI14G0615 Tripterygium wilfordii HOM05D004984 ORTHO05D006508 1.2e-192 676.8 443 76.3
TPR.G32658 Trifolium pratense HOM05D004984 ORTHO05D006508 5.8e-192 674.5 446 74.9
Ca_00179_v3 Cicer arietinum L. HOM05D004984 ORTHO05D006508 1.7e-191 672.9 467 72.2
Medtr2g010000 Medicago truncatula HOM05D004984 ORTHO05D006508 2.2e-191 672.5 456 73.2
Lj6g0001628 Lotus japonicus HOM05D004984 ORTHO05D006508 2.9e-191 672.2 456 72.6
Oeu010515.3 Olea europaea HOM05D004984 ORTHO05D006508 8.4e-191 670.6 572 63.3
Gohir.D13G048100 Gossypium hirsutum HOM05D004984 ORTHO05D006508 1.9e-190 669.5 446 73.1
EL10Ac9g22123 Beta vulgaris HOM05D004984 ORTHO05D006508 3.2e-190 668.7 448 75.2
Gorai.013G053700 Gossypium raimondii HOM05D004984 ORTHO05D006508 1.2e-189 666.8 413 77.2
Gohir.A13G049600 Gossypium hirsutum HOM05D004984 ORTHO05D006508 2.1e-189 666.0 438 74.4
TWI59G1371 Tripterygium wilfordii HOM05D004984 ORTHO05D006508 3.0e-188 662.1 446 73.8
Nitab4.5_0006251g0010 Nicotiana tabacum HOM05D004984 ORTHO05D006508 3.9e-188 661.8 455 72.5
AUR62027083 Chenopodium quinoa HOM05D004984 ORTHO05D006508 5.6e-187 657.9 434 74.0
Lalb_Chr15g0090281 Lupinus albus HOM05D004984 ORTHO05D006508 1.6e-186 656.4 458 72.3
AT2G04305 Arabidopsis thaliana HOM05D004984 ORTHO05D006508 4.8e-186 654.8 425 76.0
AUR62030922 Chenopodium quinoa HOM05D004984 ORTHO05D006508 4.8e-186 654.8 446 72.6
DCAR_021894 Daucus carota HOM05D004984 ORTHO05D006508 3.1e-185 652.1 454 71.1
Nn5g29788 Nelumbo nucifera HOM05D004984 ORTHO05D006508 3.4e-184 648.7 438 72.8
Peaxi162Scf00003g03028 Petunia axillaris HOM05D004984 ORTHO05D006508 3.2e-182 642.1 415 73.3
ECA236G3860 Erigeron canadensis HOM05D004984 ORTHO05D006508 4.2e-182 641.7 384 81.2
Actinidia00320 Actinidia chinensis HOM05D004984 ORTHO05D006508 9.3e-182 640.6 450 72.9
SGA_v2.0_scaffold32G12944 Striga asiatica HOM05D004984 ORTHO05D006508 5.1e-180 634.8 493 66.1
Sopen10g018750 Solanum pennellii HOM05D004984 ORTHO05D006508 6.7e-180 634.4 439 71.1
Solyc10g047820.1 Solanum lycopersicum HOM05D004984 ORTHO05D006508 4.3e-179 631.7 439 71.1
MBI16_g10445_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 1.3e-178 630.2 447 70.7
HPP92_019493 Vanilla planifolia HOM05D004984 ORTHO05D006508 1.1e-177 627.1 424 72.4
SEGI_07926 Sequoiadendron giganteum HOM05D004984 ORTHO05D006508 2.0e-176 622.9 469 67.6
PGSC0003DMG400004399 Solanum tuberosum HOM05D004984 ORTHO05D006508 2.0e-176 622.9 442 70.4
unitig_744.g24196 Utricularia gibba HOM05D004984 ORTHO05D006508 5.1e-172 608.2 446 66.8
SalBow6G7210 Salvia bowleyana HOM05D004984 ORTHO05D006508 3.7e-170 602.1 427 69.1
Sabra16G0177800 Salix brachista HOM05D004984 ORTHO05D006508 9.1e-169 597.4 449 67.0
Nitab4.5_0004008g0090 Nicotiana tabacum HOM05D004984 ORTHO05D006508 6.5e-167 591.3 447 66.0
Solyc08g069000.4 Solanum lycopersicum HOM05D004984 ORTHO05D006508 1.8e-164 583.2 363 78.2
HPP92_016673 Vanilla planifolia HOM05D004984 ORTHO05D006508 1.3e-159 567.0 407 66.3
Ah.01g007220 Amaranthus hybridus HOM05D004984 ORTHO05D006508 1.1e-155 553.9 359 74.9
Hma1.2p1_0383F.1_g140540 Hydrangea macrophylla HOM05D004984 ORTHO05D006508 2.0e-152 543.1 398 70.4
Mapoly0036s0130 Marchantia polymorpha HOM05D004984 ORTHO05D006508 6.1e-149 531.6 429 61.1
Nitab4.5_0000088g0020 Nicotiana tabacum HOM05D004984 ORTHO05D006508 8.0e-149 531.2 442 61.5
MBI16_g43037_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 1.1e-145 520.8 351 72.4
unitig_0.g892 Utricularia gibba HOM05D000062 ORTHO05D000043 9.1e-145 517.7 360 70.0
Pp3c9_6010 Physcomitrium patens HOM05D004984 ORTHO05D006508 2.0e-139 500.0 431 59.4
AagrBONN_evm.TU.Sc2ySwM_368.1921 Anthoceros agrestis HOM05D004984 ORTHO05D006508 5.7e-139 498.4 459 57.5
Os08g0130000 Oryza sativa ssp. japonica HOM05D004984 ORTHO05D006508 2.8e-138 496.1 460 56.7
Pp3c15_5630 Physcomitrium patens HOM05D004984 ORTHO05D006508 1.8e-137 493.4 433 58.4
Cpa.g.sc20.35 Carica papaya HOM05D004984 ORTHO05D006508 3.6e-133 479.2 323 72.1
CDE04G0284 Ceratophyllum demersum HOM05D004984 ORTHO05D006508 2.4e-129 466.5 445 56.4
MBI16_g42150_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 1.1e-113 414.5 294 69.0
Nitab4.5_0002290g0050 Nicotiana tabacum HOM05D004984 ORTHO05D006508 3.4e-107 392.9 336 61.0
Zm00001eb173240 Zea mays HOM05D004984 ORTHO05D006508 9.0e-92 341.7 255 67.1
Lalb_Chr18g0060331 Lupinus albus HOM05D004984 ORTHO05D006508 4.4e-91 339.3 247 68.8
Cpa.g.sc20.38 Carica papaya HOM05D004984 ORTHO05D006508 9.3e-89 331.6 209 77.0
Haze_10397 Corylus avellana HOM05D004984 ORTHO05D006508 1.0e-87 328.2 208 77.9
MBI16_g10446_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D243960 8.4e-82 308.5 452 42.3
Lalb_Chr18g0060321 Lupinus albus HOM05D004984 ORTHO05D006508 3.7e-77 293.1 197 73.6
DCAR_029279 Daucus carota HOM05D004984 ORTHO05D006508 2.9e-66 256.9 178 73.0
Lsat_1_v5_gn_7_73760 Lactuca sativa HOM05D004984 ORTHO05D006508 1.1e-52 211.8 136 78.7
HanXRQChr09g0257011 Helianthus annuus HOM05D004984 ORTHO05D029932 5.3e-52 209.5 154 70.1
MBI16_g47408_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D029932 1.1e-41 175.3 214 46.7
BolC3t20704H Brassica oleracea HOM05D004984 ORTHO05D040812 3.1e-36 157.1 146 53.4
C03p84240 Brassica napus HOM05D004984 ORTHO05D040812 6.5e-34 149.4 145 54.5
HanXRQChr14g0429701 Helianthus annuus HOM05D004984 ORTHO05D029932 1.5e-22 111.7 60 91.7
Nn4g23949 Nelumbo nucifera HOM05D004984 ORTHO05D006508 6.3e-13 79.7 56 66.1


User provided reference genes

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