Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038065 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 7.6e-49 196.8 97 100.0
Prupe.5G193600 Prunus persica HOM05D007096 ORTHO05D008288 2.4e-26 122.1 93 64.5
Cc00_g23090 Coffea canephora HOM05D007096 ORTHO05D008288 5.3e-26 120.9 93 63.4
PGSC0003DMG400023201 Solanum tuberosum HOM05D007096 ORTHO05D008288 9.0e-26 120.2 92 63.0
Ciclev10023845m.g Citrus clementina HOM05D007096 ORTHO05D008288 2.6e-25 118.6 89 65.2
COL.COLO4_09292 Corchorus olitorius HOM05D007096 ORTHO05D008288 3.4e-25 118.2 88 67.0
Thecc.03G087500 Theobroma cacao HOM05D007096 ORTHO05D008288 9.9e-25 116.7 87 67.8
RcHm_v2.0_Chr7g0181441 Rosa chinensis HOM05D007096 ORTHO05D008288 3.8e-24 114.8 86 67.4
QL10p017020 Quercus lobata HOM05D007096 ORTHO05D008288 8.4e-24 113.6 88 65.9
CiPaw.11G044600 Carya illinoinensis HOM05D007096 ORTHO05D008288 1.9e-23 112.5 90 64.4
CiPaw.12G013300 Carya illinoinensis HOM05D007096 ORTHO05D008288 3.2e-23 111.7 89 64.0
Manes.14G078100 Manihot esculenta HOM05D007096 ORTHO05D008288 1.6e-22 109.4 97 54.6
FAN08G2460 Fragaria x ananassa HOM05D007096 ORTHO05D008288 3.5e-22 108.2 86 65.1
FAN13G0716 Fragaria x ananassa HOM05D007096 ORTHO05D008288 3.5e-22 108.2 86 65.1
DCAR_016556 Daucus carota HOM05D007096 ORTHO05D008288 6.0e-22 107.5 92 59.8
TAR629G1384 Trochodendron aralioides HOM05D000618 ORTHO05D000454 1.3e-21 106.3 88 64.8
Gorai.008G193000 Gossypium raimondii HOM05D007096 ORTHO05D008288 1.8e-21 105.9 98 57.1
Gohir.D12G179900 Gossypium hirsutum HOM05D007096 ORTHO05D008288 3.0e-21 105.1 98 56.1
Manes.06G092300 Manihot esculenta HOM05D007096 ORTHO05D008288 3.0e-21 105.1 89 57.3
Glyma.17G100200 Glycine max HOM05D007096 ORTHO05D008288 3.9e-21 104.8 82 65.9
Gohir.A12G177500 Gossypium hirsutum HOM05D007096 ORTHO05D008288 1.1e-20 103.2 98 56.1
Atru.chr9.225 Acer truncatum HOM05D007096 ORTHO05D008288 1.9e-20 102.4 87 59.8
Oeu047297.1 Olea europaea HOM05D007096 ORTHO05D008288 1.9e-20 102.4 94 56.4
Glyma.04G169400 Glycine max HOM05D007096 ORTHO05D008288 2.5e-20 102.1 93 59.1
Lj4g0000471 Lotus japonicus HOM05D007096 ORTHO05D008288 5.6e-20 100.9 89 58.4
Nn4g23168 Nelumbo nucifera HOM05D007096 ORTHO05D008288 1.6e-19 99.4 94 59.6
Glyma.06G194000 Glycine max HOM05D007096 ORTHO05D008288 2.1e-19 99.0 94 58.5
Phvul.003G190100 Phaseolus vulgaris HOM05D007096 ORTHO05D008288 1.8e-18 95.9 83 61.4
Lj1g0007220 Lotus japonicus HOM05D007096 ORTHO05D008288 3.1e-18 95.1 87 57.5
Lalb_Chr13g0303241 Lupinus albus HOM05D007096 ORTHO05D008288 4.0e-18 94.7 86 57.0
Sed0025401 Sechium edule HOM05D007096 ORTHO05D008288 5.3e-18 94.4 88 56.8
ClCG04G012240 Citrullus lanatus HOM05D007096 ORTHO05D008288 6.9e-18 94.0 91 57.1
TAR371G0768 Trochodendron aralioides HOM05D007096 ORTHO05D008288 6.9e-18 94.0 93 51.6
Phvul.009G187200 Phaseolus vulgaris HOM05D007096 ORTHO05D008288 2.6e-17 92.0 86 59.3
CsaV3_1G005510 Cucumis sativus L. HOM05D007096 ORTHO05D008288 7.6e-17 90.5 91 56.0
Lsat_1_v5_gn_5_19601 Lactuca sativa HOM05D007096 ORTHO05D008288 1.0e-16 90.1 94 52.1
Nn3g17242 Nelumbo nucifera HOM05D007096 ORTHO05D008288 2.9e-16 88.6 94 52.1
FAN04G0033 Fragaria x ananassa HOM05D007096 ORTHO05D008288 4.9e-16 87.8 76 60.5
arahy.Tifrunner.gnm1.ann1.2U9IP4 Arachis hypogaea HOM05D007096 ORTHO05D008288 8.4e-16 87.0 81 56.8
TAR622G0633 Trochodendron aralioides HOM05D000618 ORTHO05D000454 4.2e-15 84.7 102 50.0
MELO3C001984.2 Cucumis melo HOM05D007096 ORTHO05D008288 5.5e-15 84.3 88 53.4
CSS0036898 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 7.1e-15 84.0 87 51.7
CSS0038022 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 7.1e-15 84.0 87 51.7
Sed0019012 Sechium edule HOM05D007096 ORTHO05D008288 7.1e-15 84.0 98 49.0
Cfa008979 Carpinus fangiana HOM05D007096 ORTHO05D008288 1.6e-14 82.8 92 50.0
Dinv19962 Davidia involucrata HOM05D007096 ORTHO05D008288 2.7e-14 82.0 71 64.8
CiPaw.05G135100 Carya illinoinensis HOM05D007096 ORTHO05D008288 3.5e-14 81.6 88 53.4
Haze_12011 Corylus avellana HOM05D007096 ORTHO05D008288 3.5e-14 81.6 92 48.9
Manes.05G101400 Manihot esculenta HOM05D007096 ORTHO05D008288 3.5e-14 81.6 88 51.1
TAR374G0516 Trochodendron aralioides HOM05D007096 ORTHO05D008288 3.5e-14 81.6 88 51.1
Potri.010G169300 Populus trichocarpa HOM05D007096 ORTHO05D008288 7.9e-14 80.5 92 48.9
CiPaw.06G085100 Carya illinoinensis HOM05D007096 ORTHO05D008288 1.0e-13 80.1 92 50.0
Lalb_Chr12g0196861 Lupinus albus HOM05D007096 ORTHO05D008288 1.3e-13 79.7 94 55.3
RcHm_v2.0_Chr4g0439851 Rosa chinensis HOM05D007096 ORTHO05D008288 1.3e-13 79.7 89 52.8
Sabra08G0063800 Salix brachista HOM05D007096 ORTHO05D008288 1.3e-13 79.7 88 52.3
Thecc.02G346100 Theobroma cacao HOM05D007096 ORTHO05D008288 1.3e-13 79.7 89 49.4
Ciclev10033178m.g Citrus clementina HOM05D007096 ORTHO05D008288 3.0e-13 78.6 89 51.7
FvH4_5g14931 Fragaria vesca HOM05D007096 ORTHO05D008288 6.7e-13 77.4 81 55.6
Manes.01G185500 Manihot esculenta HOM05D007096 ORTHO05D008288 6.7e-13 77.4 92 44.6
CSS0030953 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 1.5e-12 76.3 93 47.3
Migut.I00178 Erythranthe guttata HOM05D007096 ORTHO05D008288 1.5e-12 76.3 88 48.9
Potri.008G086100 Populus trichocarpa HOM05D007096 ORTHO05D008288 1.5e-12 76.3 88 50.0
Gohir.A05G183700 Gossypium hirsutum HOM05D007096 ORTHO05D008288 5.7e-12 74.3 89 43.8
Prupe.1G274800 Prunus persica HOM05D007096 ORTHO05D008288 5.7e-12 74.3 94 50.0
Migut.D01817 Erythranthe guttata HOM05D007096 ORTHO05D008288 9.7e-12 73.6 93 45.2
Gohir.D12G168200 Gossypium hirsutum HOM05D007096 ORTHO05D008288 1.6e-11 72.8 87 50.6
Gorai.008G181100 Gossypium raimondii HOM05D007096 ORTHO05D008288 1.6e-11 72.8 87 50.6
Ah.02g129680 Amaranthus hybridus HOM05D007096 ORTHO05D008288 2.2e-11 72.4 89 43.8
Glyma.05G026700 Glycine max HOM05D007096 ORTHO05D008288 2.2e-11 72.4 87 49.4
Duzib268G0913 Durio zibethinus HOM05D007096 ORTHO05D008288 4.8e-11 71.2 90 45.6
Gohir.A12G165100 Gossypium hirsutum HOM05D007096 ORTHO05D008288 6.3e-11 70.9 87 49.4
SalBow7G4253 Salvia bowleyana HOM05D007096 ORTHO05D008288 6.3e-11 70.9 85 48.2
Sed0011431 Sechium edule HOM05D007096 ORTHO05D008288 6.3e-11 70.9 98 45.9
Lsat_1_v5_gn_4_108521 Lactuca sativa HOM05D007096 ORTHO05D008288 1.1e-10 70.1 87 51.7
Gorai.009G324600 Gossypium raimondii HOM05D007096 ORTHO05D008288 1.4e-10 69.7 89 41.6
Gohir.D05G304900 Gossypium hirsutum HOM05D007096 ORTHO05D008288 1.8e-10 69.3 89 41.6
Sabra10G0129100 Salix brachista HOM05D007096 ORTHO05D008288 2.4e-10 68.9 94 42.6
Nitab4.5_0000145g0050 Nicotiana tabacum HOM05D007096 ORTHO05D008288 3.1e-10 68.6 84 48.8
DCAR_031024 Daucus carota HOM05D007096 ORTHO05D008288 4.1e-10 68.2 92 42.4
Sed0013252 Sechium edule HOM05D007096 ORTHO05D008288 4.1e-10 68.2 98 39.8
Lalb_Chr04g0256051 Lupinus albus HOM05D015099 ORTHO05D008288 5.3e-10 67.8 88 43.2
ClCG11G009950 Citrullus lanatus HOM05D007096 ORTHO05D008288 1.5e-09 66.2 92 43.5
Gohir.D02G125800 Gossypium hirsutum HOM05D007096 ORTHO05D008288 1.5e-09 66.2 88 43.2
CsaV3_2G010680 Cucumis sativus L. HOM05D007096 ORTHO05D008288 2.0e-09 65.9 95 40.0
Gorai.005G141500 Gossypium raimondii HOM05D007096 ORTHO05D008288 2.6e-09 65.5 88 42.0
Rhsim12G0063900 Rhododendron simsii HOM05D007096 ORTHO05D008288 3.4e-09 65.1 101 43.6
Lsat_1_v5_gn_9_15420 Lactuca sativa HOM05D007096 ORTHO05D008288 7.6e-09 63.9 90 43.3
Gohir.D04G191800 Gossypium hirsutum HOM05D007096 ORTHO05D008288 2.2e-08 62.4 88 47.7
Gorai.012G187200 Gossypium raimondii HOM05D007096 ORTHO05D008288 2.2e-08 62.4 88 47.7
Peaxi162Scf00911g00042 Petunia axillaris HOM05D007096 ORTHO05D008288 2.2e-08 62.4 86 43.0
Gohir.A04G147500 Gossypium hirsutum HOM05D007096 ORTHO05D008288 2.9e-08 62.0 88 47.7
Eucgr.G02504 Eucalyptus grandis HOM05D007096 ORTHO05D008288 3.8e-08 61.6 88 43.2
Peaxi162Scf00222g00814 Petunia axillaris HOM05D007096 ORTHO05D008288 6.5e-08 60.8 77 46.8
Lalb_Chr10g0098271 Lupinus albus HOM05D015099 ORTHO05D008288 8.5e-08 60.5 87 39.1
Medtr3g037730 Medicago truncatula HOM05D007096 ORTHO05D008288 1.1e-07 60.1 91 39.6
Gohir.A11G031151 Gossypium hirsutum HOM05D007096 ORTHO05D008288 1.4e-07 59.7 93 39.8
Thhalv10009347m.g Eutrema salsugineum HOM05D011140 ORTHO05D013248 2.5e-07 58.9 97 40.2
Eucgr.B03446 Eucalyptus grandis HOM05D007096 ORTHO05D008288 3.2e-07 58.5 92 43.5
Gohir.A03G101000 Gossypium hirsutum HOM05D007096 ORTHO05D008288 5.5e-07 57.8 87 40.2
Glyma.02G107400 Glycine max HOM05D015099 ORTHO05D008288 7.2e-07 57.4 106 42.5
Sed0002990 Sechium edule HOM05D007096 ORTHO05D008288 7.2e-07 57.4 86 41.9
Sed0016779 Sechium edule HOM05D007096 ORTHO05D008288 7.2e-07 57.4 86 40.7
CARHR019480 Cardamine hirsuta HOM05D011140 ORTHO05D013248 9.3e-07 57.0 92 39.1
MELO3C017172.2 Cucumis melo HOM05D007096 ORTHO05D008288 9.3e-07 57.0 86 39.5
Gohir.D11G034500 Gossypium hirsutum HOM05D007096 ORTHO05D008288 9.3e-07 57.0 96 38.5
COL.COLO4_23015 Corchorus olitorius HOM05D007096 ORTHO05D008288 1.2e-06 56.6 74 45.9
Oeu054876.1 Olea europaea HOM05D007096 ORTHO05D008288 2.7e-06 55.5 88 39.8
A08p30150 Brassica napus HOM05D011140 ORTHO05D013248 7.9e-06 53.9 94 39.4
BraA08t34949Z Brassica rapa HOM05D011140 ORTHO05D013248 7.9e-06 53.9 94 39.4


User provided reference genes

Program Settings