Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038055 Camellia sinensis var. sinensis HOM05D004659 ORTHO05D005547 3.3e-122 441.8 235 100.0
Lj1P926T21 Lonicera japonica HOM05D004659 ORTHO05D005547 4.4e-95 351.7 235 77.0
Nitab4.5_0004104g0080 Nicotiana tabacum HOM05D004659 ORTHO05D005547 4.2e-93 345.1 235 76.2
Nitab4.5_0000691g0220 Nicotiana tabacum HOM05D004659 ORTHO05D005547 1.2e-92 343.6 235 76.6
CAN.G186.30 Capsicum annuum HOM05D004659 ORTHO05D005547 9.6e-90 334.0 236 74.6
Peaxi162Scf00195g00083 Petunia axillaris HOM05D004659 ORTHO05D005547 2.8e-89 332.4 232 75.9
Rhsim03G0135900 Rhododendron simsii HOM05D004659 ORTHO05D005547 2.8e-89 332.4 236 73.7
PGSC0003DMG400032570 Solanum tuberosum HOM05D004659 ORTHO05D005547 1.4e-88 330.1 236 73.7
Hma1.2p1_2685F.1_g326920 Hydrangea macrophylla HOM05D004659 ORTHO05D005547 2.4e-88 329.3 237 73.4
Solyc04g009540.1 Solanum lycopersicum HOM05D004659 ORTHO05D005547 4.0e-88 328.6 236 73.3
Sopen04g004700 Solanum pennellii HOM05D004659 ORTHO05D005547 4.0e-88 328.6 236 73.3
vmacro04881 Vaccinium macrocarpon HOM05D004659 ORTHO05D005547 4.0e-88 328.6 237 73.4
CiPaw.02G177400 Carya illinoinensis HOM05D004659 ORTHO05D005547 9.9e-87 323.9 239 71.5
arahy.Tifrunner.gnm1.ann1.23T474 Arachis hypogaea HOM05D004659 ORTHO05D005547 4.9e-86 321.6 236 69.9
MSTRG.9197 Avicennia marina HOM05D004659 ORTHO05D005547 1.1e-85 320.5 235 72.8
ClCG02G013790 Citrullus lanatus HOM05D004659 ORTHO05D005547 1.4e-85 320.1 232 71.1
Oeu017240.1 Olea europaea HOM05D004659 ORTHO05D005547 5.5e-85 318.2 233 69.5
SalBow4G3080 Salvia bowleyana HOM05D004659 ORTHO05D005547 9.3e-85 317.4 235 69.4
Sed0009994 Sechium edule HOM05D004659 ORTHO05D005547 4.6e-84 315.1 233 70.4
CsaV3_5G006380 Cucumis sativus L. HOM05D004659 ORTHO05D005547 1.8e-83 313.2 232 69.0
Gorai.009G315800 Gossypium raimondii HOM05D004659 ORTHO05D005547 1.8e-83 313.2 232 69.8
Gohir.A05G298900 Gossypium hirsutum HOM05D004659 ORTHO05D005547 3.0e-83 312.4 232 69.4
Medtr4g131540 Medicago truncatula HOM05D004659 ORTHO05D005547 5.1e-83 311.6 227 69.2
Gohir.D05G298600 Gossypium hirsutum HOM05D004659 ORTHO05D005547 6.7e-83 311.2 232 69.4
MELO3C011720.2 Cucumis melo HOM05D004659 ORTHO05D005547 1.1e-82 310.5 232 69.0
Ca_21106_v3 Cicer arietinum L. HOM05D004659 ORTHO05D005547 2.5e-82 309.3 228 69.7
Atru.chr12.612 Acer truncatum HOM05D004659 ORTHO05D005547 3.3e-82 308.9 233 68.2
PGR031G1734 Punica granatum HOM05D004659 ORTHO05D005547 1.3e-81 307.0 238 68.1
SGA_v2.0_scaffold62G21448 Striga asiatica HOM05D004659 ORTHO05D005547 2.8e-81 305.8 236 68.2
unitig_46.g18586 Utricularia gibba HOM05D004659 ORTHO05D005547 6.2e-81 304.7 236 68.2
Psat4g007600 Pisum sativum HOM05D004659 ORTHO05D005547 1.1e-80 303.9 230 68.7
Lsat_1_v5_gn_9_66541 Lactuca sativa HOM05D004659 ORTHO05D005547 2.4e-80 302.8 234 66.7
Potri.010G215900 Populus trichocarpa HOM05D004659 ORTHO05D005547 3.1e-80 302.4 240 69.6
Potri.008G045800 Populus trichocarpa HOM05D004659 ORTHO05D005547 7.6e-79 297.7 240 67.9
Sabra08G0032100 Salix brachista HOM05D004659 ORTHO05D005547 1.3e-78 297.0 241 66.8
Actinidia03015 Actinidia chinensis HOM05D004659 ORTHO05D005547 1.7e-78 296.6 222 72.1
Sabra10G0166900 Salix brachista HOM05D004659 ORTHO05D005547 1.7e-78 296.6 235 68.9
VMungo0464G0639 Vigna mungo HOM05D004659 ORTHO05D005547 2.2e-78 296.2 229 64.6
THA.LOC104827313 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 6.5e-78 294.7 232 65.1
Cpa.g.sc1.279 Carica papaya HOM05D004659 ORTHO05D005547 1.1e-77 293.9 236 66.9
THA.LOC104799364 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 1.4e-77 293.5 230 65.2
Cfa013817 Carpinus fangiana HOM05D004659 ORTHO05D005547 2.5e-77 292.7 238 68.1
Aqoxy4G03156 Aquilegia oxysepala HOM05D004659 ORTHO05D005547 3.2e-77 292.4 235 65.5
Phvul.004G002100 Phaseolus vulgaris HOM05D004659 ORTHO05D005547 3.2e-77 292.4 205 68.8
Nn2g10610 Nelumbo nucifera HOM05D004659 ORTHO05D005547 4.2e-77 292.0 235 66.4
Manes.07G069200 Manihot esculenta HOM05D004659 ORTHO05D005547 7.1e-77 291.2 235 64.7
TWI38G0010 Tripterygium wilfordii HOM05D004659 ORTHO05D005547 1.2e-76 290.4 234 64.5
TAR369G1054 Trochodendron aralioides HOM05D004659 ORTHO05D005547 1.6e-76 290.0 233 68.7
Cc09_g02380 Coffea canephora HOM05D004659 ORTHO05D005547 2.7e-76 289.3 236 64.8
CANSAT35G1484 Cannabis sativa HOM05D004659 ORTHO05D005547 6.0e-76 288.1 234 67.1
QL08p057255 Quercus lobata HOM05D004659 ORTHO05D005547 6.0e-76 288.1 232 67.2
Prupe.8G222500 Prunus persica HOM05D004659 ORTHO05D005547 1.0e-75 287.3 238 64.3
HanXRQChr09g0247171 Helianthus annuus HOM05D004659 ORTHO05D005547 1.3e-75 287.0 231 66.2
Aa31sc127G30 Aethionema arabicum HOM05D004659 ORTHO05D005547 3.0e-75 285.8 235 63.0
Nn8g38769 Nelumbo nucifera HOM05D004659 ORTHO05D005547 5.1e-75 285.0 237 64.6
MD10G1183400 Malus domestica HOM05D004659 ORTHO05D005547 6.7e-75 284.6 235 63.4
COL.COLO4_23776 Corchorus olitorius HOM05D004659 ORTHO05D005547 8.7e-75 284.3 235 65.5
Haze_22491 Corylus avellana HOM05D004659 ORTHO05D005547 8.7e-75 284.3 236 65.7
PSO384G3929 Papaver somniferum HOM05D004659 ORTHO05D005547 8.7e-75 284.3 232 65.5
Thecc.10G065300 Theobroma cacao HOM05D004659 ORTHO05D005547 8.7e-75 284.3 241 64.7
MD05G1196100 Malus domestica HOM05D004659 ORTHO05D005547 1.1e-74 283.9 237 64.1
Duzib106G0066 Durio zibethinus HOM05D004659 ORTHO05D005547 1.9e-74 283.1 232 65.9
Sc09g0006840 Simmondsia chinensis HOM05D004659 ORTHO05D005547 1.9e-74 283.1 237 63.3
AUR62027894 Chenopodium quinoa HOM05D004659 ORTHO05D005547 2.5e-74 282.7 237 62.0
AUR62036014 Chenopodium quinoa HOM05D004659 ORTHO05D005547 2.5e-74 282.7 237 62.0
AL6G24130 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 3.3e-74 282.3 230 63.5
PSO339G6228 Papaver somniferum HOM05D004659 ORTHO05D005547 3.3e-74 282.3 232 65.1
CARHR199930 Cardamine hirsuta HOM05D004659 ORTHO05D005547 5.7e-74 281.6 229 63.3
AT5G13510 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 9.6e-74 280.8 230 63.0
DCAR_019149 Daucus carota HOM05D004659 ORTHO05D005547 1.6e-73 280.0 235 64.7
Ah.10g033100 Amaranthus hybridus HOM05D004659 ORTHO05D005547 2.8e-73 279.3 238 63.9
Ciclev10032705m.g Citrus clementina HOM05D004659 ORTHO05D005547 1.4e-72 276.9 233 62.7
BcaC04g19111 Brassica carinata HOM05D004659 ORTHO05D005547 6.9e-72 274.6 229 62.4
BolC9t59202H Brassica oleracea HOM05D004659 ORTHO05D005547 6.9e-72 274.6 229 62.4
BolC2t06562H Brassica oleracea HOM05D004659 ORTHO05D005547 1.2e-71 273.9 229 61.6
BraA02t05172Z Brassica rapa HOM05D004659 ORTHO05D005547 1.2e-71 273.9 230 62.6
Lj4g0017760 Lotus japonicus HOM05D004659 ORTHO05D005547 1.2e-71 273.9 234 62.8
Glyma.17G075900 Glycine max HOM05D004659 ORTHO05D005547 1.5e-71 273.5 234 62.4
Lalb_Chr07g0179691 Lupinus albus HOM05D004659 ORTHO05D005547 1.5e-71 273.5 215 64.7
C02p06210 Brassica napus HOM05D004659 ORTHO05D005547 5.9e-71 271.6 229 61.1
C09p63590 Brassica napus HOM05D004659 ORTHO05D005547 5.9e-71 271.6 229 62.4
A10p24760 Brassica napus HOM05D004659 ORTHO05D005547 1.3e-70 270.4 229 62.4
BraA10t44539Z Brassica rapa HOM05D004659 ORTHO05D005547 1.3e-70 270.4 229 62.4
RcHm_v2.0_Chr6g0287931 Rosa chinensis HOM05D004659 ORTHO05D005547 1.3e-70 270.4 232 62.1
Thhalv10014625m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 1.7e-70 270.0 229 62.4
BcaNung01889 Brassica carinata HOM05D004659 ORTHO05D005547 2.2e-70 269.6 229 61.1
ECA232G1287 Erigeron canadensis HOM05D004659 ORTHO05D005547 2.2e-70 269.6 216 63.4
Sp6g30510 Schrenkiella parvula HOM05D004659 ORTHO05D005547 2.2e-70 269.6 229 61.1
BcaNung01147 Brassica carinata HOM05D004659 ORTHO05D005547 3.8e-70 268.9 229 61.1
FvH4_2g21340 Fragaria vesca HOM05D004659 ORTHO05D005547 7.2e-69 264.6 233 61.8
Carub.0006s1167 Capsella rubella HOM05D004659 ORTHO05D005547 1.2e-68 263.8 230 60.0
ATR0594G228 Amborella trichopoda HOM05D004659 ORTHO05D005547 6.1e-68 261.5 180 69.4
FAN24G1009 Fragaria x ananassa HOM05D004659 ORTHO05D005547 7.9e-68 261.2 182 70.9
MBI05_g34749_MAGBIO Magnolia biondii HOM05D004659 ORTHO05D005547 1.3e-67 260.4 232 60.3
CDE02G4355 Ceratophyllum demersum HOM05D002697 ORTHO05D005547 1.5e-66 256.9 178 70.2
CDE09G1094 Ceratophyllum demersum HOM05D004659 ORTHO05D005547 4.3e-66 255.4 229 60.3
Lalb_Chr13g0301081 Lupinus albus HOM05D004659 ORTHO05D005547 1.8e-64 250.0 229 61.1
Zm00001eb397230 Zea mays HOM05D004659 ORTHO05D005547 6.9e-64 248.1 182 65.9
Zm00001eb013020 Zea mays HOM05D004659 ORTHO05D005547 1.2e-63 247.3 182 65.9
SMO239G0117 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 1.5e-63 246.9 175 69.1
Mapoly0115s0051 Marchantia polymorpha HOM05D004659 ORTHO05D005547 2.6e-63 246.1 182 66.5
Pp3c2_35950 Physcomitrium patens HOM05D004659 ORTHO05D005547 1.0e-62 244.2 178 66.3
Dinv31375 Davidia involucrata HOM05D004659 ORTHO05D005547 1.3e-62 243.8 175 76.6
Os03g0284400 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 3.8e-62 242.3 182 64.8
AagrBONN_evm.TU.Sc2ySwM_228.2422 Anthoceros agrestis HOM05D004659 ORTHO05D005547 2.1e-60 236.5 178 64.6
Pp3c1_1330 Physcomitrium patens HOM05D004659 ORTHO05D005547 3.6e-60 235.7 178 65.2
TPR.G37110 Trifolium pratense HOM05D004659 ORTHO05D005547 6.3e-57 224.9 130 80.0
SMO001G0016 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 2.0e-55 219.9 145 71.0
Haze_16952 Corylus avellana HOM05D004659 ORTHO05D005547 9.1e-48 194.5 238 52.1
AL3G24020 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 5.5e-45 185.3 146 58.9
AT3G12370 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 2.1e-44 183.3 146 58.2
C01p52890 Brassica napus HOM05D004659 ORTHO05D005547 4.7e-44 182.2 147 57.1
Sp3g10560 Schrenkiella parvula HOM05D004659 ORTHO05D005547 6.1e-44 181.8 146 56.8
Thhalv10022434m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 8.0e-44 181.4 147 56.5
BolC1t05226H Brassica oleracea HOM05D004659 ORTHO05D005547 1.4e-43 180.6 147 56.5
BcaC05g29267 Brassica carinata HOM05D004659 ORTHO05D005547 4.0e-43 179.1 147 55.8
BcaC09g48234 Brassica carinata HOM05D004659 ORTHO05D005547 4.0e-43 179.1 147 56.5
C05p55460 Brassica napus HOM05D004659 ORTHO05D005547 4.0e-43 179.1 147 55.8
BolC5t34212H Brassica oleracea HOM05D004659 ORTHO05D005547 4.0e-43 179.1 147 55.8
A05p37030 Brassica napus HOM05D004659 ORTHO05D005547 5.2e-43 178.7 147 55.8
BraA05t22500Z Brassica rapa HOM05D004659 ORTHO05D005547 5.2e-43 178.7 147 55.8
Carub.0003s1173 Capsella rubella HOM05D004659 ORTHO05D005547 5.2e-43 178.7 143 57.3
Zm00001eb355270 Zea mays HOM05D004659 ORTHO05D005547 1.5e-42 177.2 146 56.2
Aa31sc153G80 Aethionema arabicum HOM05D004659 ORTHO05D005547 3.3e-42 176.0 145 54.5
CARHR086910 Cardamine hirsuta HOM05D004659 ORTHO05D005547 4.4e-42 175.6 146 54.8
CBR_g32465 Chara braunii HOM05D004659 ORTHO05D005547 5.7e-42 175.3 184 48.9
Os05g0121500 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 4.8e-41 172.2 160 51.2
SMO306G0014 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 4.2e-37 159.1 102 75.5
HPP92_012064 Vanilla planifolia HOM05D004659 ORTHO05D005547 5.5e-37 158.7 146 51.4
Glyma.13G155300 Glycine max HOM05D004659 ORTHO05D005547 9.8e-34 147.9 105 67.6
A02p02000 Brassica napus HOM05D004659 ORTHO05D005547 7.0e-32 141.7 102 63.7
Cfa001576 Carpinus fangiana HOM05D004659 ORTHO05D005547 1.0e-30 137.9 237 44.3
Rhsim07G0202500 Rhododendron simsii HOM05D004659 ORTHO05D005547 2.2e-30 136.7 132 61.4
Hund23274 Selenicereus undatus HOM05D004659 ORTHO05D005547 1.2e-28 131.0 155 43.2
PRCOL_00005567 Prasinoderma coloniale HOM05D004659 ORTHO05D005547 1.4e-27 127.5 146 45.2
Sc01g0005590 Simmondsia chinensis HOM05D004659 ORTHO05D005547 1.8e-27 127.1 155 43.2
BcaB01g05353 Brassica carinata HOM05D004659 ORTHO05D005547 1.5e-26 124.0 129 51.2
MD17G1117700 Malus domestica HOM05D004659 ORTHO05D005547 9.8e-26 121.3 88 64.8
Sc26g0002120 Simmondsia chinensis HOM05D004659 ORTHO05D005547 3.7e-25 119.4 155 40.6
Sc01g0009170 Simmondsia chinensis HOM05D004659 ORTHO05D005547 5.0e-22 109.0 130 45.4
Ah.09g233850 Amaranthus hybridus HOM05D004659 ORTHO05D005547 1.1e-21 107.8 150 36.7
GSVIVG01032650001 Vitis vinifera HOM05D004659 ORTHO05D005547 7.3e-21 105.1 231 35.5
EL10Ac6g15306 Beta vulgaris HOM05D004659 ORTHO05D005547 1.6e-20 104.0 155 36.1
Actinidia38237 Actinidia chinensis HOM05D004659 ORTHO05D005547 3.6e-20 102.8 105 61.0
Cre06.g272850 Chlamydomonas reinhardtii HOM05D004659 ORTHO05D005547 4.0e-19 99.4 191 32.5
Zm00001eb342870 Zea mays HOM05D004659 ORTHO05D005547 5.2e-19 99.0 71 60.6
MBI05_g35481_MAGBIO Magnolia biondii HOM05D004659 ORTHO05D005547 2.0e-18 97.1 105 51.4
Pp3c11_2850 Physcomitrium patens HOM05D004659 ORTHO05D005547 2.9e-17 93.2 67 70.1
AUR62043493 Chenopodium quinoa HOM05D004659 ORTHO05D005547 8.6e-14 81.6 113 38.9
Medtr3g058560 Medicago truncatula HOM05D004659 ORTHO05D005547 3.4e-10 69.7 48 66.7
Hma1.2p1_1893F.1_g306730 Hydrangea macrophylla HOM05D004659 ORTHO05D005547 1.9e-08 63.9 59 50.8
AUR62017877 Chenopodium quinoa HOM05D004659 ORTHO05D005547 2.7e-07 60.1 108 35.2
AUR62003563 Chenopodium quinoa HOM05D004659 ORTHO05D005547 6.0e-07 58.9 84 36.9


User provided reference genes

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