Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038026 Camellia sinensis var. sinensis HOM05D003907 ORTHO05D004819 4.1e-279 964.1 510 100.0
CSS0040367 Camellia sinensis var. sinensis HOM05D003907 ORTHO05D004819 2.3e-261 905.2 511 93.0
Actinidia05367 Actinidia chinensis HOM05D003907 ORTHO05D004819 5.8e-257 890.6 512 91.2
Dinv23105 Davidia involucrata HOM05D003907 ORTHO05D004819 1.4e-255 885.9 510 90.0
CiPaw.09G209200 Carya illinoinensis HOM05D003907 ORTHO05D004819 9.2e-255 883.2 510 89.6
TAR636G2600 Trochodendron aralioides HOM05D003907 ORTHO05D004819 4.6e-254 880.9 510 89.4
Cc06_g01360 Coffea canephora HOM05D003907 ORTHO05D004819 1.0e-253 879.8 510 89.0
TWI53G0466 Tripterygium wilfordii HOM05D003907 ORTHO05D004819 3.9e-253 877.9 510 89.2
Manes.09G104800 Manihot esculenta HOM05D003907 ORTHO05D004819 5.1e-253 877.5 510 88.8
GSVIVG01033959001 Vitis vinifera HOM05D003907 ORTHO05D004819 5.1e-253 877.5 510 89.0
Lj2A75G35 Lonicera japonica HOM05D003907 ORTHO05D004819 1.5e-252 875.9 510 88.8
Cfa017208 Carpinus fangiana HOM05D003907 ORTHO05D004819 3.3e-252 874.8 510 89.2
Sopen09g001280 Solanum pennellii HOM05D003907 ORTHO05D004819 4.3e-252 874.4 510 88.2
CAN.G5.12 Capsicum annuum HOM05D003907 ORTHO05D004819 5.6e-252 874.0 510 87.8
Solyc09g005310.3 Solanum lycopersicum HOM05D003907 ORTHO05D004819 5.6e-252 874.0 510 88.2
Nn2g11497 Nelumbo nucifera HOM05D003907 ORTHO05D004819 1.2e-251 872.8 510 87.8
PGSC0003DMG400023084 Solanum tuberosum HOM05D003907 ORTHO05D004819 1.6e-251 872.5 510 87.6
QL07p019755 Quercus lobata HOM05D003907 ORTHO05D004819 2.8e-251 871.7 509 88.0
Glyma.18G200800 Glycine max HOM05D003907 ORTHO05D004819 4.7e-251 870.9 510 88.4
vmacro11169 Vaccinium macrocarpon HOM05D003907 ORTHO05D004819 4.7e-251 870.9 549 84.0
MSTRG.26811 Avicennia marina HOM05D003907 ORTHO05D004819 6.2e-251 870.5 510 88.2
TWI74G1106 Tripterygium wilfordii HOM05D003907 ORTHO05D004819 6.2e-251 870.5 510 88.4
Gorai.006G182500 Gossypium raimondii HOM05D003907 ORTHO05D004819 8.1e-251 870.2 511 88.6
Prupe.6G277300 Prunus persica HOM05D003907 ORTHO05D004819 8.1e-251 870.2 510 88.8
TAR633G0126 Trochodendron aralioides HOM05D003907 ORTHO05D004819 8.1e-251 870.2 510 88.0
Gohir.D09G160800 Gossypium hirsutum HOM05D003907 ORTHO05D004819 1.8e-250 869.0 511 88.5
Oeu041306.1 Olea europaea HOM05D003907 ORTHO05D004819 1.8e-250 869.0 510 88.8
MSTRG.10218 Avicennia marina HOM05D003907 ORTHO05D004819 2.3e-250 868.6 510 87.6
Manes.09G105700 Manihot esculenta HOM05D003907 ORTHO05D004819 2.3e-250 868.6 510 87.5
Gohir.A09G165200 Gossypium hirsutum HOM05D003907 ORTHO05D004819 3.1e-250 868.2 511 88.3
Lsat_1_v5_gn_9_34621 Lactuca sativa HOM05D003907 ORTHO05D004819 3.1e-250 868.2 510 87.1
SGA_v2.0_scaffold110G31215 Striga asiatica HOM05D003907 ORTHO05D004819 4.0e-250 867.8 510 87.8
ClCG04G006990 Citrullus lanatus HOM05D003907 ORTHO05D004819 6.8e-250 867.1 510 87.8
HanXRQChr10g0299881 Helianthus annuus HOM05D003907 ORTHO05D004819 1.2e-249 866.3 510 87.6
Nitab4.5_0000511g0010 Nicotiana tabacum HOM05D003907 ORTHO05D004819 1.5e-249 865.9 510 88.2
Glyma.07G149900 Glycine max HOM05D003907 ORTHO05D004819 2.6e-249 865.1 510 87.6
Duzib106G0096 Durio zibethinus HOM05D003907 ORTHO05D004819 4.4e-249 864.4 511 87.5
Potri.006G100200 Populus trichocarpa HOM05D003907 ORTHO05D004819 4.4e-249 864.4 510 86.9
Ciclev10011517m.g Citrus clementina HOM05D003907 ORTHO05D004819 5.8e-249 864.0 511 87.3
Nitab4.5_0000335g0010 Nicotiana tabacum HOM05D003907 ORTHO05D004819 5.8e-249 864.0 510 88.0
CsaV3_4G026280 Cucumis sativus L. HOM05D003907 ORTHO05D004819 1.3e-248 862.8 510 87.6
Migut.L02013 Erythranthe guttata HOM05D003907 ORTHO05D004819 1.3e-248 862.8 510 87.8
Psat3g128200 Pisum sativum HOM05D003907 ORTHO05D004819 1.3e-248 862.8 510 86.7
Potri.016G116200 Populus trichocarpa HOM05D003907 ORTHO05D004819 2.9e-248 861.7 510 86.9
arahy.Tifrunner.gnm1.ann1.NAY5W3 Arachis hypogaea HOM05D003907 ORTHO05D004819 4.1e-247 857.8 510 86.5
arahy.Tifrunner.gnm1.ann1.S2G015 Arachis hypogaea HOM05D003907 ORTHO05D004819 4.1e-247 857.8 510 86.5
Sabra16G0111700 Salix brachista HOM05D003907 ORTHO05D004819 5.4e-247 857.4 510 86.1
Atru.chr8.2242 Acer truncatum HOM05D003907 ORTHO05D004819 9.2e-247 856.7 511 86.5
THA.LOC104823300 Tarenaya hassleriana HOM05D003907 ORTHO05D004819 9.2e-247 856.7 510 87.3
CANSAT35G0110 Cannabis sativa HOM05D003907 ORTHO05D004819 1.2e-246 856.3 510 87.6
CiPaw.10G156600 Carya illinoinensis HOM05D003907 ORTHO05D004819 1.6e-246 855.9 510 87.1
Carub.0006s0037 Capsella rubella HOM05D003907 ORTHO05D004819 3.5e-246 854.7 510 85.5
MD04G1152700 Malus domestica HOM05D003907 ORTHO05D004819 6.0e-246 854.0 510 86.9
Thecc.05G016000 Theobroma cacao HOM05D003907 ORTHO05D004819 6.0e-246 854.0 511 86.5
Rhsim03G0144200 Rhododendron simsii HOM05D003907 ORTHO05D004819 1.0e-245 853.2 505 89.3
MD12G1166000 Malus domestica HOM05D003907 ORTHO05D004819 1.7e-245 852.4 510 87.1
Thhalv10013023m.g Eutrema salsugineum HOM05D003907 ORTHO05D004819 2.3e-245 852.0 510 85.1
Aqoxy4G02574 Aquilegia oxysepala HOM05D003907 ORTHO05D004819 3.0e-245 851.7 511 84.9
AT5G01460 Arabidopsis thaliana HOM05D003907 ORTHO05D004819 5.1e-245 850.9 510 85.3
Haze_21003 Corylus avellana HOM05D003907 ORTHO05D004819 5.1e-245 850.9 527 85.6
AL6G10610 Arabidopsis lyrata HOM05D003907 ORTHO05D004819 8.6e-245 850.1 510 85.1
TPR.G13353 Trifolium pratense HOM05D003907 ORTHO05D004819 8.6e-245 850.1 511 85.5
Lj3g0019592 Lotus japonicus HOM05D003907 ORTHO05D004819 1.1e-244 849.7 510 86.3
Medtr7g068440 Medicago truncatula HOM05D003907 ORTHO05D004819 1.5e-244 849.4 510 85.7
PGR004G0735 Punica granatum HOM05D003907 ORTHO05D004819 2.5e-244 848.6 510 86.5
AL3G19930 Arabidopsis lyrata HOM05D003907 ORTHO05D004819 3.3e-244 848.2 510 84.7
Migut.J00170 Erythranthe guttata HOM05D003907 ORTHO05D004819 3.3e-244 848.2 510 86.7
Carub.0003s0804 Capsella rubella HOM05D003907 ORTHO05D004819 4.3e-244 847.8 510 84.7
AT3G08930 Arabidopsis thaliana HOM05D003907 ORTHO05D004819 7.3e-244 847.0 510 84.5
CARHR211830 Cardamine hirsuta HOM05D003907 ORTHO05D004819 9.6e-244 846.7 510 84.3
Sed0027660 Sechium edule HOM05D003907 ORTHO05D004819 1.6e-243 845.9 510 85.5
Glyma.01G122100 Glycine max HOM05D003907 ORTHO05D004819 2.1e-243 845.5 510 86.1
Sp6g40750 Schrenkiella parvula HOM05D003907 ORTHO05D004819 2.8e-243 845.1 510 84.7
Glyma.03G058100 Glycine max HOM05D003907 ORTHO05D004819 6.2e-243 844.0 510 85.9
Sed0026155 Sechium edule HOM05D003907 ORTHO05D004819 6.2e-243 844.0 510 84.9
DCAR_018702 Daucus carota HOM05D003907 ORTHO05D004819 8.1e-243 843.6 511 85.1
Ca_20232_v3 Cicer arietinum L. HOM05D003907 ORTHO05D004819 2.4e-242 842.0 510 84.7
PSO801G0155 Papaver somniferum HOM05D003907 ORTHO05D004819 2.4e-242 842.0 511 85.7
SGA_v2.0_scaffold240G44095 Striga asiatica HOM05D003907 ORTHO05D004819 2.4e-242 842.0 502 87.6
Aqoxy2G00900 Aquilegia oxysepala HOM05D003907 ORTHO05D004819 3.1e-242 841.6 511 85.7
PSO339G6136 Papaver somniferum HOM05D003907 ORTHO05D004819 3.1e-242 841.6 511 85.7
Hund14296 Selenicereus undatus HOM05D003907 ORTHO05D004819 3.1e-242 841.6 511 85.3
Ah.12g058610 Amaranthus hybridus HOM05D003907 ORTHO05D004819 5.2e-242 840.9 510 85.1
Lj3A953T53 Lonicera japonica HOM05D003907 ORTHO05D004819 8.9e-242 840.1 522 84.1
BcaB04g18559 Brassica carinata HOM05D003907 ORTHO05D004819 2.6e-241 838.6 510 84.1
Thhalv10020541m.g Eutrema salsugineum HOM05D003907 ORTHO05D004819 4.4e-241 837.8 510 83.7
Sp3g07320 Schrenkiella parvula HOM05D003907 ORTHO05D004819 5.8e-241 837.4 510 83.5
BolC5t34549H Brassica oleracea HOM05D003907 ORTHO05D004819 7.6e-241 837.0 510 83.7
C05p58960 Brassica napus HOM05D003907 ORTHO05D004819 9.9e-241 836.6 510 83.7
CARHR083260 Cardamine hirsuta HOM05D003907 ORTHO05D004819 1.3e-240 836.3 510 83.1
BraSC256t45932Z Brassica rapa HOM05D003907 ORTHO05D004819 2.2e-240 835.5 510 83.5
Phvul.008G104400 Phaseolus vulgaris HOM05D003907 ORTHO05D004819 2.2e-240 835.5 510 84.9
RcHm_v2.0_Chr3g0463141 Rosa chinensis HOM05D003907 ORTHO05D004819 2.2e-240 835.5 510 84.9
EL10Ac5g12561 Beta vulgaris HOM05D003907 ORTHO05D004819 3.8e-240 834.7 510 83.7
SalBow5G2920 Salvia bowleyana HOM05D003907 ORTHO05D004819 3.8e-240 834.7 510 84.1
FAN09G4250 Fragaria x ananassa HOM05D003907 ORTHO05D004819 7.1e-239 830.5 510 84.9
Lalb_Chr01g0023081 Lupinus albus HOM05D003907 ORTHO05D004819 2.1e-238 828.9 512 84.4
unitig_8.g3229 Utricularia gibba HOM05D003907 ORTHO05D004819 2.7e-238 828.6 510 83.7
AUR62010458 Chenopodium quinoa HOM05D003907 ORTHO05D004819 1.3e-237 826.2 511 83.4
FvH4_6g11450 Fragaria vesca HOM05D003907 ORTHO05D004819 3.0e-237 825.1 510 84.1
FAN02G2014 Fragaria x ananassa HOM05D003907 ORTHO05D004819 3.0e-237 825.1 510 84.1
FAN14G1433 Fragaria x ananassa HOM05D003907 ORTHO05D004819 3.0e-237 825.1 510 84.1
FAN14G5854 Fragaria x ananassa HOM05D003907 ORTHO05D004819 3.0e-237 825.1 510 84.1
ATR0618G011 Amborella trichopoda HOM05D003907 ORTHO05D004819 3.3e-236 821.6 511 83.2
Lalb_Chr03g0043281 Lupinus albus HOM05D003907 ORTHO05D004819 3.6e-235 818.1 512 82.8
Eucgr.B02811 Eucalyptus grandis HOM05D003907 ORTHO05D004819 2.6e-233 812.0 494 86.0
A03p36270 Brassica napus HOM05D003907 ORTHO05D004819 4.5e-233 811.2 510 81.8
C03p43910 Brassica napus HOM05D003907 ORTHO05D004819 4.5e-233 811.2 510 81.8
ECA247G1720 Erigeron canadensis HOM05D003907 ORTHO05D004819 4.5e-233 811.2 475 86.9
BolC3t16659H Brassica oleracea HOM05D003907 ORTHO05D004819 5.8e-233 810.8 510 81.6
BraA03t12798Z Brassica rapa HOM05D003907 ORTHO05D004819 1.3e-232 809.7 510 81.6
A05p39920 Brassica napus HOM05D003907 ORTHO05D004819 2.4e-231 805.4 494 83.4
Aa31LG1G23090 Aethionema arabicum HOM05D003907 ORTHO05D004819 2.1e-230 802.4 494 83.2
VMungo0331G1185 Vigna mungo HOM05D003907 ORTHO05D004819 6.0e-230 800.8 494 84.6
FAN05G4390 Fragaria x ananassa HOM05D003907 ORTHO05D004819 2.3e-229 798.9 494 84.6
Sabra06G0077000 Salix brachista HOM05D003907 ORTHO05D004819 2.5e-228 795.4 556 76.8
COL.COLO4_14536 Corchorus olitorius HOM05D003907 ORTHO05D004819 9.6e-228 793.5 472 87.3
CDE05G1648 Ceratophyllum demersum HOM05D003907 ORTHO05D004819 1.3e-227 793.1 511 79.6
Oeu064499.2 Olea europaea HOM05D003907 ORTHO05D004819 1.6e-227 792.7 547 77.5
Zm00001eb269470 Zea mays HOM05D003907 ORTHO05D004819 5.3e-226 787.7 511 80.0
Lalb_Chr19g0124541 Lupinus albus HOM05D003907 ORTHO05D004819 1.4e-223 779.6 512 80.3
CDE05G1838 Ceratophyllum demersum HOM05D003907 ORTHO05D004819 1.2e-222 776.5 511 78.1
Peaxi162Scf00141g01026 Petunia axillaris HOM05D003907 ORTHO05D004819 2.7e-222 775.4 510 80.4
AUR62030453 Chenopodium quinoa HOM05D003907 ORTHO05D004819 7.9e-222 773.9 512 79.7
Zm00001eb378570 Zea mays HOM05D003907 ORTHO05D004819 3.9e-221 771.5 509 79.4
Phvul.010G001200 Phaseolus vulgaris HOM05D003907 ORTHO05D004819 4.0e-218 761.5 510 78.4
Ca_07641_v3 Cicer arietinum L. HOM05D003907 ORTHO05D004819 6.9e-218 760.8 524 77.1
Ca_30080_v3 Cicer arietinum L. HOM05D003907 ORTHO05D004819 6.9e-218 760.8 524 77.1
BcaC05g29627 Brassica carinata HOM05D003907 ORTHO05D004819 2.2e-208 729.2 440 84.1
Actinidia20733 Actinidia chinensis HOM05D003907 ORTHO05D004819 7.7e-201 704.1 510 75.9
MELO3C003291.2 Cucumis melo HOM05D003907 ORTHO05D004819 1.7e-200 703.0 472 80.7
Duzib128G0387 Durio zibethinus HOM05D003907 ORTHO05D004819 2.1e-198 696.0 511 74.4
Lj3g0026649 Lotus japonicus HOM05D003907 ORTHO05D004819 1.3e-195 686.8 413 86.2
Duzib093G1828 Durio zibethinus HOM05D003907 ORTHO05D004819 2.8e-195 685.6 503 73.6
Mapoly0058s0053 Marchantia polymorpha HOM05D003907 ORTHO05D004819 1.4e-191 673.3 514 66.3
SMO367G0485 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 5.0e-184 648.3 503 68.2
Cpa.g.sc11.141 Carica papaya HOM05D003907 ORTHO05D004819 4.1e-178 628.6 375 85.3
unitig_22.g6592 Utricularia gibba HOM05D003907 ORTHO05D004819 1.0e-176 624.0 468 70.7
Pp3c13_15020 Physcomitrium patens HOM05D003907 ORTHO05D004819 1.2e-172 610.5 514 60.3
Sc01g0006450 Simmondsia chinensis HOM05D003907 ORTHO05D004819 2.2e-171 606.3 365 86.0
TPR.G7076 Trifolium pratense HOM05D003907 ORTHO05D004819 9.1e-170 600.9 364 85.4
HPP92_003698 Vanilla planifolia HOM05D003907 ORTHO05D004819 1.1e-167 594.0 379 80.7
CBR_g40208 Chara braunii HOM05D003907 ORTHO05D004819 3.6e-166 589.0 520 61.0
SMO146G0061 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 4.9e-163 578.6 496 60.5
DCAR_015417 Daucus carota HOM05D003907 ORTHO05D004819 1.1e-162 577.4 504 65.7
CBR_g53729 Chara braunii HOM05D003907 ORTHO05D004819 1.4e-162 577.0 511 59.3
Ah.02g115900 Amaranthus hybridus HOM05D003907 ORTHO05D004819 3.0e-157 559.3 347 83.9
Hma1.2p1_0362F.1_g136250 Hydrangea macrophylla HOM05D003907 ORTHO05D004819 1.3e-155 553.9 325 88.6
Pp3c23_4110 Physcomitrium patens HOM05D003907 ORTHO05D004819 6.6e-152 541.6 501 54.3
Actinidia11586 Actinidia chinensis HOM05D003907 ORTHO05D004819 2.8e-150 536.2 457 67.2
Glyma.16G099300 Glycine max HOM05D003907 ORTHO05D004819 6.0e-145 518.5 307 87.9
Actinidia27153 Actinidia chinensis HOM05D003907 ORTHO05D004819 1.3e-139 500.7 284 90.8
AagrBONN_evm.TU.Sc2ySwM_368.1024 Anthoceros agrestis HOM05D003907 ORTHO05D004819 5.4e-130 468.8 383 62.1
Actinidia29101 Actinidia chinensis HOM05D003907 ORTHO05D004819 2.9e-123 446.4 254 89.8
PRCOL_00002088 Prasinoderma coloniale HOM05D003907 ORTHO05D004819 4.2e-114 416.0 513 46.0
Actinidia29102 Actinidia chinensis HOM05D003907 ORTHO05D004819 1.3e-112 411.0 245 87.8
SMO015G0001 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 1.1e-106 391.3 386 55.4
MCO03G500 Micromonas commoda HOM05D003907 ORTHO05D004819 1.5e-103 380.9 487 45.2
SEGI_00285 Sequoiadendron giganteum HOM05D003907 ORTHO05D004819 9.0e-101 371.7 267 74.9
Cre01.g023400 Chlamydomonas reinhardtii HOM05D003907 ORTHO05D004819 1.4e-93 347.8 519 38.5
CSS0040994 Camellia sinensis var. sinensis HOM05D003907 ORTHO05D004819 2.8e-86 323.6 199 87.9
SMO173G0027 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 1.1e-71 275.0 345 48.1
TPR.G8133 Trifolium pratense HOM05D003907 ORTHO05D038338 3.0e-64 250.4 503 37.4
SEGI_07345 Sequoiadendron giganteum HOM05D003907 ORTHO05D004819 1.3e-59 235.0 144 84.0
SMO173G0021 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 2.2e-59 234.2 312 45.8
SMO023G0001 Selaginella moellendorffii HOM05D003907 ORTHO05D376622 1.6e-57 228.0 365 41.1
SMO146G0194 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 2.8e-46 190.7 211 51.7
ATR0759G042 Amborella trichopoda HOM05D003907 ORTHO05D038338 2.0e-44 184.5 117 77.8
SMO173G0002 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 2.0e-44 184.5 197 51.3
ATR0759G047 Amborella trichopoda HOM05D003907 ORTHO05D004819 7.8e-44 182.6 143 71.3
Ca_20230_v3 Cicer arietinum L. HOM05D003907 ORTHO05D148210 1.5e-31 141.7 106 71.7
SMO146G0334 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 2.0e-31 141.4 119 57.1
BcaC01g04205 Brassica carinata HOM05D003907 ORTHO05D004819 9.2e-29 132.5 82 85.4
VMungo1080G1595 Vigna mungo HOM05D003907 ORTHO05D004819 1.1e-21 109.0 121 57.9
SMO173G0093 Selaginella moellendorffii HOM05D003907 ORTHO05D378519 1.0e-11 75.9 64 59.4
arahy.Tifrunner.gnm1.ann1.W1QHU6 Arachis hypogaea HOM05D003907 ORTHO05D018508 3.3e-10 70.9 39 87.2
arahy.Tifrunner.gnm1.ann1.7H636Z Arachis hypogaea HOM05D005380 ORTHO05D006601 4.8e-09 67.0 37 86.5
PSO541G6111 Papaver somniferum HOM05D003907 ORTHO05D305003 6.4e-06 56.6 38 73.7


User provided reference genes

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