Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036898 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 6.1e-43 177.2 95 100.0
CSS0038022 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 6.1e-43 177.2 95 100.0
CSS0030953 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 2.2e-21 105.5 93 63.4
Manes.05G101400 Manihot esculenta HOM05D007096 ORTHO05D008288 2.7e-19 98.6 93 61.3
Ciclev10033178m.g Citrus clementina HOM05D007096 ORTHO05D008288 5.2e-18 94.4 93 61.3
TAR629G1384 Trochodendron aralioides HOM05D000618 ORTHO05D000454 5.2e-18 94.4 89 64.0
Nn4g23168 Nelumbo nucifera HOM05D007096 ORTHO05D008288 1.5e-17 92.8 90 60.0
TAR622G0633 Trochodendron aralioides HOM05D000618 ORTHO05D000454 2.0e-17 92.4 89 62.9
DCAR_031024 Daucus carota HOM05D007096 ORTHO05D008288 3.4e-17 91.7 93 55.9
Rhsim12G0063900 Rhododendron simsii HOM05D007096 ORTHO05D008288 3.4e-17 91.7 101 55.4
Nn3g17242 Nelumbo nucifera HOM05D007096 ORTHO05D008288 4.4e-17 91.3 90 56.7
Thecc.02G346100 Theobroma cacao HOM05D007096 ORTHO05D008288 4.4e-17 91.3 95 57.9
TAR374G0516 Trochodendron aralioides HOM05D007096 ORTHO05D008288 4.4e-17 91.3 89 57.3
CiPaw.06G085100 Carya illinoinensis HOM05D007096 ORTHO05D008288 5.7e-17 90.9 88 60.2
Haze_12011 Corylus avellana HOM05D007096 ORTHO05D008288 1.3e-16 89.7 93 55.9
Duzib268G0913 Durio zibethinus HOM05D007096 ORTHO05D008288 1.7e-16 89.4 94 56.4
Potri.010G169300 Populus trichocarpa HOM05D007096 ORTHO05D008288 1.7e-16 89.4 92 54.3
Cfa008979 Carpinus fangiana HOM05D007096 ORTHO05D008288 3.7e-16 88.2 93 54.8
CiPaw.05G135100 Carya illinoinensis HOM05D007096 ORTHO05D008288 2.4e-15 85.5 92 56.5
Manes.01G185500 Manihot esculenta HOM05D007096 ORTHO05D008288 3.1e-15 85.1 93 53.8
Sabra08G0063800 Salix brachista HOM05D007096 ORTHO05D008288 1.6e-14 82.8 90 55.6
Prupe.1G274800 Prunus persica HOM05D007096 ORTHO05D008288 2.0e-14 82.4 96 53.1
Gohir.D12G168200 Gossypium hirsutum HOM05D007096 ORTHO05D008288 2.7e-14 82.0 93 52.7
Gorai.008G181100 Gossypium raimondii HOM05D007096 ORTHO05D008288 2.7e-14 82.0 93 52.7
TAR371G0768 Trochodendron aralioides HOM05D007096 ORTHO05D008288 2.7e-14 82.0 91 58.2
Gohir.A05G183700 Gossypium hirsutum HOM05D007096 ORTHO05D008288 5.9e-14 80.9 94 50.0
Gohir.A12G165100 Gossypium hirsutum HOM05D007096 ORTHO05D008288 7.7e-14 80.5 93 51.6
Gorai.009G324600 Gossypium raimondii HOM05D007096 ORTHO05D008288 5.0e-13 77.8 94 47.9
Potri.008G086100 Populus trichocarpa HOM05D007096 ORTHO05D008288 5.0e-13 77.8 92 52.2
Gohir.D05G304900 Gossypium hirsutum HOM05D007096 ORTHO05D008288 6.5e-13 77.4 94 47.9
RcHm_v2.0_Chr4g0439851 Rosa chinensis HOM05D007096 ORTHO05D008288 8.6e-13 77.0 94 51.1
CSS0038065 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 1.9e-12 75.9 87 51.7
PGSC0003DMG400023201 Solanum tuberosum HOM05D007096 ORTHO05D008288 1.9e-12 75.9 87 50.6
Prupe.5G193600 Prunus persica HOM05D007096 ORTHO05D008288 4.2e-12 74.7 86 53.5
Sabra10G0129100 Salix brachista HOM05D007096 ORTHO05D008288 4.2e-12 74.7 89 49.4
Ah.02g129680 Amaranthus hybridus HOM05D007096 ORTHO05D008288 5.5e-12 74.3 88 50.0
Nitab4.5_0000145g0050 Nicotiana tabacum HOM05D007096 ORTHO05D008288 5.5e-12 74.3 86 52.3
Lalb_Chr04g0256051 Lupinus albus HOM05D015099 ORTHO05D008288 7.2e-12 73.9 89 44.9
Atru.chr9.225 Acer truncatum HOM05D007096 ORTHO05D008288 9.5e-12 73.6 86 53.5
Gohir.A04G147500 Gossypium hirsutum HOM05D007096 ORTHO05D008288 9.5e-12 73.6 93 47.3
Gohir.D02G125800 Gossypium hirsutum HOM05D007096 ORTHO05D008288 9.5e-12 73.6 93 48.4
Gohir.D04G191800 Gossypium hirsutum HOM05D007096 ORTHO05D008288 9.5e-12 73.6 93 46.2
Manes.14G078100 Manihot esculenta HOM05D007096 ORTHO05D008288 9.5e-12 73.6 91 50.5
Gorai.012G187200 Gossypium raimondii HOM05D007096 ORTHO05D008288 1.2e-11 73.2 93 46.2
Gorai.005G141500 Gossypium raimondii HOM05D007096 ORTHO05D008288 1.6e-11 72.8 93 47.3
RcHm_v2.0_Chr7g0181441 Rosa chinensis HOM05D007096 ORTHO05D008288 1.6e-11 72.8 91 48.4
Lalb_Chr10g0098271 Lupinus albus HOM05D015099 ORTHO05D008288 2.1e-11 72.4 94 39.4
Ciclev10023845m.g Citrus clementina HOM05D007096 ORTHO05D008288 4.7e-11 71.2 86 51.2
FAN08G2460 Fragaria x ananassa HOM05D007096 ORTHO05D008288 3.0e-10 68.6 85 48.2
Glyma.17G100200 Glycine max HOM05D007096 ORTHO05D008288 4.0e-10 68.2 89 52.8
FAN13G0716 Fragaria x ananassa HOM05D007096 ORTHO05D008288 5.2e-10 67.8 85 47.1
Peaxi162Scf00222g00814 Petunia axillaris HOM05D007096 ORTHO05D008288 6.8e-10 67.4 79 51.9
Carub.0002s1626 Capsella rubella HOM05D009494 ORTHO05D011604 8.8e-10 67.0 117 39.3
COL.COLO4_09292 Corchorus olitorius HOM05D007096 ORTHO05D008288 8.8e-10 67.0 92 47.8
QL10p017020 Quercus lobata HOM05D007096 ORTHO05D008288 8.8e-10 67.0 86 48.8
CiPaw.11G044600 Carya illinoinensis HOM05D007096 ORTHO05D008288 2.6e-09 65.5 87 48.3
Cc00_g23090 Coffea canephora HOM05D007096 ORTHO05D008288 3.4e-09 65.1 92 47.8
Eucgr.B03446 Eucalyptus grandis HOM05D007096 ORTHO05D008288 3.4e-09 65.1 88 50.0
Manes.06G092300 Manihot esculenta HOM05D007096 ORTHO05D008288 5.7e-09 64.3 88 45.5
Lsat_1_v5_gn_5_19601 Lactuca sativa HOM05D007096 ORTHO05D008288 7.5e-09 63.9 95 40.0
Sed0025401 Sechium edule HOM05D007096 ORTHO05D008288 7.5e-09 63.9 84 44.0
Oeu054876.1 Olea europaea HOM05D007096 ORTHO05D008288 9.8e-09 63.5 90 45.6
Thecc.03G087500 Theobroma cacao HOM05D007096 ORTHO05D008288 9.8e-09 63.5 95 45.3
CARHR062540 Cardamine hirsuta HOM05D009494 ORTHO05D011604 1.3e-08 63.2 111 39.6
CiPaw.12G013300 Carya illinoinensis HOM05D007096 ORTHO05D008288 1.3e-08 63.2 87 47.1
ClCG11G009950 Citrullus lanatus HOM05D007096 ORTHO05D008288 1.3e-08 63.2 94 44.7
Oeu047297.1 Olea europaea HOM05D007096 ORTHO05D008288 1.3e-08 63.2 92 44.6
Lsat_1_v5_gn_9_15420 Lactuca sativa HOM05D007096 ORTHO05D008288 2.8e-08 62.0 96 39.6
A07p31500 Brassica napus HOM05D009494 ORTHO05D011604 3.7e-08 61.6 113 36.3
Glyma.06G194000 Glycine max HOM05D007096 ORTHO05D008288 3.7e-08 61.6 84 46.4
Gohir.A03G101000 Gossypium hirsutum HOM05D007096 ORTHO05D008288 3.7e-08 61.6 93 43.0
Thhalv10019320m.g Eutrema salsugineum HOM05D009494 ORTHO05D011604 4.9e-08 61.2 117 40.2
BcaC03g15096 Brassica carinata HOM05D009494 ORTHO05D011604 8.3e-08 60.5 117 35.9
C02p26570 Brassica napus HOM05D009494 ORTHO05D011604 8.3e-08 60.5 117 35.9
C06p36810 Brassica napus HOM05D009494 ORTHO05D011604 8.3e-08 60.5 116 34.5
BolC2t08728H Brassica oleracea HOM05D009494 ORTHO05D011604 8.3e-08 60.5 117 35.9
BraA07t30782Z Brassica rapa HOM05D009494 ORTHO05D011604 8.3e-08 60.5 116 35.3
ClCG04G012240 Citrullus lanatus HOM05D007096 ORTHO05D008288 8.3e-08 60.5 87 44.8
DCAR_027414 Daucus carota HOM05D007096 ORTHO05D008288 8.3e-08 60.5 70 50.0
Lj4g0000471 Lotus japonicus HOM05D007096 ORTHO05D008288 8.3e-08 60.5 86 41.9
Glyma.04G169400 Glycine max HOM05D007096 ORTHO05D008288 1.1e-07 60.1 85 43.5
Lj1g0007220 Lotus japonicus HOM05D007096 ORTHO05D008288 1.1e-07 60.1 90 45.6
Peaxi162Scf00911g00042 Petunia axillaris HOM05D007096 ORTHO05D008288 1.1e-07 60.1 93 39.8
CsaV3_2G010680 Cucumis sativus L. HOM05D007096 ORTHO05D008288 1.4e-07 59.7 90 44.4
BcaC08g45881 Brassica carinata HOM05D009494 ORTHO05D011604 1.8e-07 59.3 116 34.5
BolC6t38790H Brassica oleracea HOM05D009494 ORTHO05D011604 1.8e-07 59.3 116 34.5
DCAR_016556 Daucus carota HOM05D007096 ORTHO05D008288 1.8e-07 59.3 93 40.9
Phvul.003G190100 Phaseolus vulgaris HOM05D007096 ORTHO05D008288 1.8e-07 59.3 89 43.8
BraA02t06659Z Brassica rapa HOM05D009494 ORTHO05D011604 2.4e-07 58.9 111 38.7
Phvul.009G187200 Phaseolus vulgaris HOM05D007096 ORTHO05D008288 3.1e-07 58.5 85 42.4
THA.LOC104822126 Tarenaya hassleriana HOM05D009494 ORTHO05D011604 3.1e-07 58.5 119 37.8
Glyma.02G107400 Glycine max HOM05D015099 ORTHO05D008288 5.4e-07 57.8 101 41.6
Lsat_1_v5_gn_8_52521 Lactuca sativa HOM05D007096 ORTHO05D008288 5.4e-07 57.8 72 43.1
Migut.L01293 Erythranthe guttata HOM05D007096 ORTHO05D008288 7.0e-07 57.4 93 43.0
A02p15990 Brassica napus HOM05D009494 ORTHO05D011604 9.2e-07 57.0 117 35.0
Lalb_Chr13g0303241 Lupinus albus HOM05D007096 ORTHO05D008288 9.2e-07 57.0 94 39.4
AT1G69588 Arabidopsis thaliana HOM05D009494 ORTHO05D011604 1.6e-06 56.2 117 35.9
MELO3C001984.2 Cucumis melo HOM05D007096 ORTHO05D008288 2.0e-06 55.8 85 41.2
Sp5g24710 Schrenkiella parvula HOM05D009494 ORTHO05D011604 2.0e-06 55.8 113 37.2
CsaV3_1G005510 Cucumis sativus L. HOM05D007096 ORTHO05D008288 2.7e-06 55.5 87 41.4
COL.COLO4_23015 Corchorus olitorius HOM05D007096 ORTHO05D008288 3.5e-06 55.1 80 48.8
Sed0002990 Sechium edule HOM05D007096 ORTHO05D008288 5.9e-06 54.3 89 44.9
BcaB03g15485 Brassica carinata HOM05D009494 ORTHO05D011604 7.8e-06 53.9 117 33.3
Sed0013252 Sechium edule HOM05D007096 ORTHO05D008288 7.8e-06 53.9 94 35.1


User provided reference genes

Program Settings