Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038011 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 3.5e-118 428.3 220 100.0
CSS0040553 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.9e-116 422.5 220 98.6
Dinv29939 Davidia involucrata HOM05D002209 ORTHO05D004761 1.7e-88 329.7 204 82.4
Actinidia35110 Actinidia chinensis HOM05D002209 ORTHO05D004761 6.4e-88 327.8 214 79.4
CSS0032919 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 8.4e-88 327.4 204 80.9
Rhsim07G0079200 Rhododendron simsii HOM05D002209 ORTHO05D004761 1.2e-86 323.6 204 79.9
RhsimUnG0064800 Rhododendron simsii HOM05D002209 ORTHO05D004761 1.6e-86 323.2 204 79.9
CSS0009925 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 2.1e-86 322.8 204 79.9
Dinv24643 Davidia involucrata HOM05D002209 ORTHO05D004761 5.6e-84 314.7 203 79.3
vmacro16528 Vaccinium macrocarpon HOM05D002209 ORTHO05D004761 2.7e-78 295.8 204 75.0
Lj9A421T102 Lonicera japonica HOM05D002209 ORTHO05D004761 1.6e-75 286.6 216 69.0
GSVIVG01008394001 Vitis vinifera HOM05D002209 ORTHO05D004761 2.9e-72 275.8 205 70.2
QL10p027517 Quercus lobata HOM05D002209 ORTHO05D004761 3.8e-72 275.4 203 69.5
TAR629G1642 Trochodendron aralioides HOM05D002209 ORTHO05D004761 3.8e-72 275.4 207 67.6
Gohir.A09G051300 Gossypium hirsutum HOM05D002209 ORTHO05D004761 7.2e-71 271.2 219 65.3
Gohir.D09G052400 Gossypium hirsutum HOM05D002209 ORTHO05D004761 1.2e-70 270.4 219 64.8
Gorai.006G057200 Gossypium raimondii HOM05D002209 ORTHO05D004761 1.6e-70 270.0 219 64.8
Nitab4.5_0000150g0110 Nicotiana tabacum HOM05D002209 ORTHO05D004761 2.1e-70 269.6 204 65.2
Ciclev10008707m.g Citrus clementina HOM05D002209 ORTHO05D004761 4.6e-70 268.5 204 67.2
Hma1.2p1_0669F.1_g200340 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 6.1e-70 268.1 221 64.7
COL.COLO4_05870 Corchorus olitorius HOM05D002209 ORTHO05D004761 3.0e-69 265.8 206 67.0
Duzib205G0470 Durio zibethinus HOM05D002209 ORTHO05D004761 6.7e-69 264.6 206 65.0
Peaxi162Scf01127g00030 Petunia axillaris HOM05D002209 ORTHO05D004761 1.1e-68 263.8 204 62.7
Manes.06G008500 Manihot esculenta HOM05D002209 ORTHO05D004761 1.5e-68 263.5 207 61.8
CAN.G1129.31 Capsicum annuum HOM05D002209 ORTHO05D004761 9.7e-68 260.8 218 60.1
Thecc.03G048800 Theobroma cacao HOM05D002209 ORTHO05D004761 1.3e-67 260.4 218 62.4
Eucgr.B00855 Eucalyptus grandis HOM05D002209 ORTHO05D004761 2.2e-67 259.6 206 65.0
TAR622G1360 Trochodendron aralioides HOM05D002209 ORTHO05D004761 2.8e-67 259.2 209 66.0
Peaxi162Scf00683g00231 Petunia axillaris HOM05D002209 ORTHO05D004761 4.8e-67 258.5 202 63.4
Nitab4.5_0001158g0020 Nicotiana tabacum HOM05D002209 ORTHO05D004761 6.3e-67 258.1 204 60.8
PGSC0003DMG402005658 Solanum tuberosum HOM05D002209 ORTHO05D004761 1.8e-66 256.5 218 58.7
Nitab4.5_0012369g0030 Nicotiana tabacum HOM05D002209 ORTHO05D004761 2.4e-66 256.1 205 60.0
TWI81G0085 Tripterygium wilfordii HOM05D002209 ORTHO05D004761 3.1e-66 255.8 202 64.4
Duzib084G0729 Durio zibethinus HOM05D002209 ORTHO05D004761 4.1e-66 255.4 206 65.0
Lj4g0012439 Lotus japonicus HOM05D002209 ORTHO05D004761 9.0e-66 254.2 205 61.5
Sopen03g037920 Solanum pennellii HOM05D002209 ORTHO05D004761 9.0e-66 254.2 218 58.3
Atru.chr9.949 Acer truncatum HOM05D002209 ORTHO05D004761 1.2e-65 253.8 206 64.1
Solyc03g119030.4 Solanum lycopersicum HOM05D002209 ORTHO05D004761 1.2e-65 253.8 218 58.3
CiPaw.16G090800 Carya illinoinensis HOM05D002209 ORTHO05D004761 2.0e-65 253.1 200 64.5
AUR62040790 Chenopodium quinoa HOM05D002209 ORTHO05D004761 1.3e-64 250.4 203 63.1
SGA_v2.0_scaffold171G38932 Striga asiatica HOM05D002209 ORTHO05D004761 2.2e-64 249.6 205 62.0
Cpa.g.sc3.426 Carica papaya HOM05D002209 ORTHO05D004761 2.9e-64 249.2 205 60.5
PGR083G2774 Punica granatum HOM05D002209 ORTHO05D004761 2.9e-64 249.2 209 63.2
DCAR_011382 Daucus carota HOM05D002209 ORTHO05D004761 3.8e-64 248.8 203 63.1
HanXRQChr05g0144521 Helianthus annuus HOM05D002209 ORTHO05D004761 3.8e-64 248.8 204 63.7
Cc04_g06630 Coffea canephora HOM05D002209 ORTHO05D004761 1.4e-63 246.9 204 62.3
CANSAT80G1163 Cannabis sativa HOM05D002209 ORTHO05D004761 7.2e-63 244.6 200 60.0
CANSAT80G2224 Cannabis sativa HOM05D002209 ORTHO05D004761 7.2e-63 244.6 200 60.0
AUR62002654 Chenopodium quinoa HOM05D002209 ORTHO05D004761 7.2e-63 244.6 205 61.5
MD00G1160600 Malus domestica HOM05D002209 ORTHO05D004761 9.4e-63 244.2 214 58.9
Nn4g24077 Nelumbo nucifera HOM05D002209 ORTHO05D004761 1.6e-62 243.4 204 61.3
Glyma.05G243700 Glycine max HOM05D002209 ORTHO05D004761 2.1e-62 243.0 202 59.9
RcHm_v2.0_Chr7g0178801 Rosa chinensis HOM05D002209 ORTHO05D004761 4.6e-62 241.9 218 57.3
Potri.015G041700 Populus trichocarpa HOM05D002209 ORTHO05D004761 6.1e-62 241.5 215 59.1
Sc12g0007380 Simmondsia chinensis HOM05D002209 ORTHO05D004761 1.0e-61 240.7 216 55.6
EL10Ac8g19603 Beta vulgaris HOM05D002209 ORTHO05D004761 2.3e-61 239.6 203 61.1
Nn3g18057 Nelumbo nucifera HOM05D002209 ORTHO05D004761 2.3e-61 239.6 202 62.4
Sed0007305 Sechium edule HOM05D002209 ORTHO05D004761 3.9e-61 238.8 207 58.5
Lalb_Chr16g0387141 Lupinus albus HOM05D002209 ORTHO05D004761 5.1e-61 238.4 205 60.0
MBI10_g07297_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 5.1e-61 238.4 204 61.8
Glyma.08G051500 Glycine max HOM05D002209 ORTHO05D004761 6.7e-61 238.0 202 58.9
Prupe.5G229900 Prunus persica HOM05D002209 ORTHO05D004761 1.1e-60 237.3 218 56.9
Phvul.002G327400 Phaseolus vulgaris HOM05D002209 ORTHO05D004761 1.5e-60 236.9 207 57.0
VMungo0251G1482 Vigna mungo HOM05D002209 ORTHO05D004761 3.3e-60 235.7 203 56.2
Potri.012G049700 Populus trichocarpa HOM05D002209 ORTHO05D004761 4.4e-60 235.3 215 57.7
Sabra15G0063000 Salix brachista HOM05D002209 ORTHO05D004761 4.4e-60 235.3 201 62.7
Nitab4.5_0012395g0010 Nicotiana tabacum HOM05D002209 ORTHO05D004761 9.7e-60 234.2 183 62.8
FAN18G1515 Fragaria x ananassa HOM05D002209 ORTHO05D004761 1.3e-59 233.8 218 56.9
CsaV3_1G004130 Cucumis sativus L. HOM05D002209 ORTHO05D004761 4.8e-59 231.9 207 58.0
ECA246G4025 Erigeron canadensis HOM05D002209 ORTHO05D004761 8.2e-59 231.1 167 66.5
FvH4_5g17050 Fragaria vesca HOM05D002209 ORTHO05D004761 8.2e-59 231.1 218 56.4
FAN08G3349 Fragaria x ananassa HOM05D002209 ORTHO05D004761 8.2e-59 231.1 218 56.9
MD14G1233700 Malus domestica HOM05D002209 ORTHO05D004761 8.2e-59 231.1 218 55.0
Sabra15G0055400 Salix brachista HOM05D002209 ORTHO05D004761 1.1e-58 230.7 201 61.2
unitig_0.g802 Utricularia gibba HOM05D002209 ORTHO05D004761 1.8e-58 229.9 204 55.9
Lalb_Chr09g0330521 Lupinus albus HOM05D002209 ORTHO05D004761 3.1e-58 229.2 205 59.0
TPR.G12929 Trifolium pratense HOM05D002209 ORTHO05D004761 5.3e-58 228.4 213 55.9
Lsat_1_v5_gn_3_1001 Lactuca sativa HOM05D002209 ORTHO05D004761 6.9e-58 228.0 206 58.7
Haze_18790 Corylus avellana HOM05D002209 ORTHO05D004761 1.2e-57 227.3 192 63.5
Aqoxy3G03975 Aquilegia oxysepala HOM05D002209 ORTHO05D004761 5.9e-57 224.9 219 53.9
MSTRG.9285 Avicennia marina HOM05D002209 ORTHO05D004761 5.9e-57 224.9 204 57.4
SalBow1G1036 Salvia bowleyana HOM05D002209 ORTHO05D004761 5.9e-57 224.9 228 52.2
MSTRG.4560 Avicennia marina HOM05D002209 ORTHO05D004761 7.7e-57 224.6 202 56.9
FAN13G0599 Fragaria x ananassa HOM05D002209 ORTHO05D004761 1.7e-56 223.4 213 55.9
THA.LOC104821836 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 2.2e-56 223.0 209 56.9
arahy.Tifrunner.gnm1.ann1.6WJC3X Arachis hypogaea HOM05D002209 ORTHO05D004761 2.9e-56 222.6 203 54.2
Carub.0001s3778 Capsella rubella HOM05D002209 ORTHO05D004761 1.1e-55 220.7 206 57.3
Medtr8g106780 Medicago truncatula HOM05D002209 ORTHO05D004761 1.4e-55 220.3 207 55.6
Psat7g003880 Pisum sativum HOM05D002209 ORTHO05D004761 1.4e-55 220.3 219 54.3
A06p04280 Brassica napus HOM05D002209 ORTHO05D004761 2.5e-55 219.5 204 55.4
Sp1g35610 Schrenkiella parvula HOM05D002209 ORTHO05D004761 2.5e-55 219.5 204 55.4
AT1G48635 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 4.2e-55 218.8 204 55.9
BcaB07g33725 Brassica carinata HOM05D002209 ORTHO05D004761 4.2e-55 218.8 204 54.9
Migut.D01447 Erythranthe guttata HOM05D002209 ORTHO05D004761 9.4e-55 217.6 203 54.7
Aa31LG10G5170 Aethionema arabicum HOM05D003754 ORTHO05D004530 1.2e-54 217.2 204 54.9
BraA06t23631Z Brassica rapa HOM05D002209 ORTHO05D004761 1.2e-54 217.2 202 55.9
MBI16_g47222_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 2.1e-54 216.5 207 56.0
CARHR038280 Cardamine hirsuta HOM05D002209 ORTHO05D004761 3.6e-54 215.7 204 54.9
Lalb_Chr05g0221871 Lupinus albus HOM05D002209 ORTHO05D004761 4.7e-54 215.3 206 54.4
BolC6t35461H Brassica oleracea HOM05D002209 ORTHO05D004761 1.0e-53 214.2 202 55.0
AL1G55300 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 1.8e-53 213.4 204 54.9
BcaC08g43072 Brassica carinata HOM05D002209 ORTHO05D004761 6.7e-53 211.5 204 53.9
C06p03290 Brassica napus HOM05D002209 ORTHO05D004761 6.7e-53 211.5 204 53.9
Thhalv10011573m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 6.7e-53 211.5 205 55.1
AL3G31330 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 1.1e-52 210.7 207 55.6
THA.LOC104820369 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 1.5e-52 210.3 211 53.6
GSVIVG01008387001 Vitis vinifera HOM05D002209 ORTHO05D004761 7.4e-52 208.0 164 67.1
PSO063G7528 Papaver somniferum HOM05D002209 ORTHO05D004761 1.3e-51 207.2 215 52.1
PSO782G2563 Papaver somniferum HOM05D002209 ORTHO05D004761 1.7e-51 206.8 215 52.1
AT3G18160 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 2.4e-50 203.0 207 53.1
Carub.0003s1787 Capsella rubella HOM05D002209 ORTHO05D004761 3.1e-50 202.6 203 53.7
Solyc12g040480.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 3.1e-50 202.6 161 60.9
CARHR093480 Cardamine hirsuta HOM05D002209 ORTHO05D004761 5.3e-50 201.8 203 53.2
Sopen12g020080 Solanum pennellii HOM05D002209 ORTHO05D004761 4.5e-49 198.7 161 59.6
Sp3g16270 Schrenkiella parvula HOM05D002209 ORTHO05D004761 3.8e-48 195.7 207 51.2
ClCG06G014470 Citrullus lanatus HOM05D002209 ORTHO05D004761 5.0e-48 195.3 205 52.2
MBI16_g47372_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 5.0e-48 195.3 207 51.7
BcaB04g18980 Brassica carinata HOM05D002209 ORTHO05D004761 4.2e-47 192.2 206 51.5
BraA03t13213Z Brassica rapa HOM05D002209 ORTHO05D004761 4.2e-47 192.2 205 50.7
BolC3t17231H Brassica oleracea HOM05D002209 ORTHO05D004761 5.5e-47 191.8 205 50.2
BcaC01g03707 Brassica carinata HOM05D002209 ORTHO05D004761 7.2e-47 191.4 205 50.2
BcaB04g20791 Brassica carinata HOM05D002209 ORTHO05D004761 8.0e-46 188.0 206 49.5
A03p40560 Brassica napus HOM05D002209 ORTHO05D004761 8.0e-46 188.0 205 50.2
Aa31LG8G4990 Aethionema arabicum HOM05D002209 ORTHO05D004761 1.4e-45 187.2 202 50.0
C03p49370 Brassica napus HOM05D002209 ORTHO05D004761 1.5e-44 183.7 215 47.9
HPP92_008203 Vanilla planifolia HOM05D002209 ORTHO05D004761 2.0e-44 183.3 204 48.5
Ca_17220_v3 Cicer arietinum L. HOM05D002209 ORTHO05D004761 7.5e-44 181.4 186 50.5
Thhalv10020989m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 2.8e-43 179.5 203 48.3
BcaC09g48771 Brassica carinata HOM05D002209 ORTHO05D004761 1.8e-42 176.8 203 48.3
Hund22655 Selenicereus undatus HOM05D002209 ORTHO05D004761 2.4e-42 176.4 208 47.6
PGSC0003DMG400015822 Solanum tuberosum HOM05D002209 ORTHO05D004761 4.5e-41 172.2 138 60.9
Zm00001eb098030 Zea mays HOM05D002209 ORTHO05D004761 5.0e-40 168.7 210 44.8
A01p36240 Brassica napus HOM05D002209 ORTHO05D007926 8.0e-38 161.4 193 46.6
BolC1t04568H Brassica oleracea HOM05D002209 ORTHO05D007926 8.0e-38 161.4 193 46.6
BraA01t03699Z Brassica rapa HOM05D002209 ORTHO05D007926 8.0e-38 161.4 193 46.6
C01p46070 Brassica napus HOM05D002209 ORTHO05D007926 1.0e-37 161.0 193 46.6
SHI19025 Sapria himalayana HOM05D002209 ORTHO05D000001 3.0e-37 159.5 210 43.3
ATR0326G049 Amborella trichopoda HOM05D002209 ORTHO05D004761 5.2e-37 158.7 172 50.0
Oeu017505.1 Olea europaea HOM05D002209 ORTHO05D004761 6.8e-37 158.3 139 60.4
CSS0016222 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 8.8e-37 157.9 105 78.1
Oeu053224.1 Olea europaea HOM05D002209 ORTHO05D004761 3.4e-36 156.0 136 59.6
CDE02G4061 Ceratophyllum demersum HOM05D002209 ORTHO05D004761 1.7e-35 153.7 193 45.6
SEGI_04696 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 7.7e-33 144.8 201 40.3
Duzib068G1457 Durio zibethinus HOM05D002209 ORTHO05D004761 1.0e-32 144.4 206 44.2
Sed0027899 Sechium edule HOM05D002209 ORTHO05D004761 1.0e-32 144.4 119 59.7
MELO3C017339.2 Cucumis melo HOM05D002209 ORTHO05D004761 3.2e-31 139.4 128 55.5
Psat0s3278g0200 Pisum sativum HOM05D002209 ORTHO05D004761 1.7e-27 127.1 133 53.4
Mapoly0003s0191 Marchantia polymorpha HOM05D002209 ORTHO05D004761 7.8e-25 118.2 199 35.2
Pp3c8_16550 Physcomitrium patens HOM05D002209 ORTHO05D004761 1.3e-24 117.5 197 38.1
CBR_g38112 Chara braunii HOM05D002209 ORTHO05D004761 3.8e-24 115.9 195 36.4
Pp3c20_5170 Physcomitrium patens HOM05D002209 ORTHO05D004761 7.3e-23 111.7 196 36.7
Pp3c24_12050 Physcomitrium patens HOM05D002209 ORTHO05D004761 1.8e-21 107.1 196 34.7
AagrBONN_evm.TU.Sc2ySwM_344.1865 Anthoceros agrestis HOM05D002209 ORTHO05D004761 7.5e-20 101.7 199 33.2
CSS0022680 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 5.6e-15 85.5 45 91.1
SMO367G0254 Selaginella moellendorffii HOM05D002209 ORTHO05D004761 8.0e-14 81.6 194 26.8
CSS0050298 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 3.4e-12 76.3 44 84.1
Oeu017507.1 Olea europaea HOM05D002209 ORTHO05D004761 1.9e-10 70.5 45 73.3
Solyc12g040500.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 2.4e-10 70.1 49 65.3
Sopen12g020100 Solanum pennellii HOM05D002209 ORTHO05D004761 3.2e-10 69.7 44 72.7
PGSC0003DMG400015821 Solanum tuberosum HOM05D002209 ORTHO05D004761 3.2e-10 69.7 44 72.7
FAN04G3108 Fragaria x ananassa HOM05D002209 ORTHO05D004761 9.2e-10 68.2 57 56.1
SEGI_01637 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 3.5e-09 66.2 119 37.0
arahy.Tifrunner.gnm1.ann1.C5B8HT Arachis hypogaea HOM05D002209 ORTHO05D004761 3.6e-06 56.2 43 55.8


User provided reference genes

Program Settings