Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038005 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 1.1e-107 393.3 194 100.0
CSS0001944 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 1.4e-107 392.9 194 99.5
Rhsim02G0013600 Rhododendron simsii HOM05D003864 ORTHO05D004658 1.5e-75 286.6 183 78.7
vmacro22597 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 3.0e-73 278.9 189 74.6
vmacro15256 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 8.8e-73 277.3 188 74.5
Cc03_g02350 Coffea canephora HOM05D003864 ORTHO05D004658 2.0e-69 266.2 188 70.7
Haze_01063 Corylus avellana HOM05D003864 ORTHO05D004658 5.9e-69 264.6 190 68.4
Lj6A670T81 Lonicera japonica HOM05D003864 ORTHO05D004658 7.7e-69 264.2 189 69.8
CiPaw.02G086600 Carya illinoinensis HOM05D003864 ORTHO05D004658 2.9e-68 262.3 187 71.7
Peaxi162Scf00386g00316 Petunia axillaris HOM05D003864 ORTHO05D004658 8.5e-68 260.8 183 71.6
TAR633G1069 Trochodendron aralioides HOM05D003864 ORTHO05D004658 1.5e-67 260.0 187 70.6
Aqoxy2G03115 Aquilegia oxysepala HOM05D003864 ORTHO05D004658 9.4e-67 257.3 187 70.1
Hma1.2p1_0150F.1_g066600 Hydrangea macrophylla HOM05D003864 ORTHO05D004658 9.4e-67 257.3 187 70.6
Gohir.A10G101440 Gossypium hirsutum HOM05D003864 ORTHO05D004658 1.2e-66 256.9 187 69.5
Gorai.011G185900 Gossypium raimondii HOM05D003864 ORTHO05D004658 1.2e-66 256.9 187 69.5
Gohir.D10G166700 Gossypium hirsutum HOM05D003864 ORTHO05D004658 2.1e-66 256.1 187 69.0
GSVIVG01017804001 Vitis vinifera HOM05D003864 ORTHO05D004658 2.1e-66 256.1 184 70.1
Cfa015492 Carpinus fangiana HOM05D003864 ORTHO05D004658 2.7e-66 255.8 187 68.4
vmacro08202 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 2.7e-66 255.8 196 67.9
Actinidia23428 Actinidia chinensis HOM05D003864 ORTHO05D004658 3.6e-66 255.4 187 69.5
Nitab4.5_0004537g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 3.6e-66 255.4 193 67.4
TAR362G0395 Trochodendron aralioides HOM05D003864 ORTHO05D004658 4.7e-66 255.0 187 70.1
CiPaw.01G152900 Carya illinoinensis HOM05D003864 ORTHO05D004658 1.0e-65 253.8 187 69.0
Actinidia00050 Actinidia chinensis HOM05D003864 ORTHO05D004658 1.4e-65 253.4 194 67.5
CAN.G256.9 Capsicum annuum HOM05D003864 ORTHO05D004658 1.8e-65 253.1 188 68.1
Manes.15G016900 Manihot esculenta HOM05D003864 ORTHO05D004658 3.0e-65 252.3 190 68.4
Nitab4.5_0001459g0140 Nicotiana tabacum HOM05D003864 ORTHO05D004658 3.0e-65 252.3 198 66.2
Ciclev10005325m.g Citrus clementina HOM05D003864 ORTHO05D004658 8.8e-65 250.8 196 66.3
Thecc.04G277700 Theobroma cacao HOM05D003864 ORTHO05D004658 8.8e-65 250.8 196 66.8
Nn4g25986 Nelumbo nucifera HOM05D003864 ORTHO05D004658 1.2e-64 250.4 187 67.4
Sabra08G0157300 Salix brachista HOM05D003864 ORTHO05D004658 1.2e-64 250.4 197 65.0
Solyc01g067630.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 1.5e-64 250.0 187 67.4
ClCG06G005360 Citrullus lanatus HOM05D003864 ORTHO05D004658 2.0e-64 249.6 182 67.6
Peaxi162Scf00033g01410 Petunia axillaris HOM05D003864 ORTHO05D004658 2.0e-64 249.6 193 66.8
MELO3C021355.2 Cucumis melo HOM05D003864 ORTHO05D004658 5.7e-64 248.1 182 67.0
Eucgr.B01266 Eucalyptus grandis HOM05D003864 ORTHO05D004658 5.7e-64 248.1 187 66.8
AL4G36380 Arabidopsis lyrata HOM05D003864 ORTHO05D004658 9.8e-64 247.3 185 67.0
Potri.008G204700 Populus trichocarpa HOM05D003864 ORTHO05D004658 9.8e-64 247.3 187 67.4
PGSC0003DMG400030786 Solanum tuberosum HOM05D003864 ORTHO05D004658 9.8e-64 247.3 187 67.4
Duzib151G0071 Durio zibethinus HOM05D003864 ORTHO05D004658 1.3e-63 246.9 196 64.8
COL.COLO4_13927 Corchorus olitorius HOM05D003864 ORTHO05D004658 2.2e-63 246.1 183 66.7
Carub.0004s2113 Capsella rubella HOM05D003864 ORTHO05D004658 2.8e-63 245.7 187 65.2
Nitab4.5_0001054g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 2.8e-63 245.7 198 64.1
Rhsim04G0216400 Rhododendron simsii HOM05D003864 ORTHO05D004658 3.7e-63 245.4 230 58.7
Manes.03G191300 Manihot esculenta HOM05D003864 ORTHO05D004658 4.8e-63 245.0 187 69.5
CsaV3_6G017400 Cucumis sativus L. HOM05D003864 ORTHO05D004658 6.3e-63 244.6 182 65.9
PGR031G0559 Punica granatum HOM05D003864 ORTHO05D004658 6.3e-63 244.6 189 63.5
TWI53G0015 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 8.3e-63 244.2 190 65.8
TWI53G1008 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 8.3e-63 244.2 190 65.8
A03p21870 Brassica napus HOM05D003864 ORTHO05D004658 1.1e-62 243.8 199 62.3
BraA03t11423Z Brassica rapa HOM05D003864 ORTHO05D004658 1.1e-62 243.8 199 62.3
PSO210G7573 Papaver somniferum HOM05D003864 ORTHO05D004658 1.8e-62 243.0 187 66.3
Atru.chr4.2755 Acer truncatum HOM05D003864 ORTHO05D004658 2.4e-62 242.7 181 66.9
Nitab4.5_0000784g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 3.1e-62 242.3 188 67.0
THA.LOC104820237 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 4.1e-62 241.9 187 66.3
MSTRG.10054 Avicennia marina HOM05D003864 ORTHO05D004658 5.4e-62 241.5 182 67.0
PSO170G3769 Papaver somniferum HOM05D003864 ORTHO05D004658 5.4e-62 241.5 187 65.8
BraA05t19685Z Brassica rapa HOM05D003864 ORTHO05D004658 1.2e-61 240.4 187 64.2
Prupe.1G142000 Prunus persica HOM05D003864 ORTHO05D004658 1.2e-61 240.4 182 67.0
Lj4g0016445 Lotus japonicus HOM05D003864 ORTHO05D004658 1.6e-61 240.0 189 65.1
C03p25940 Brassica napus HOM05D003864 ORTHO05D004658 3.5e-61 238.8 186 63.4
Sc19g0004950 Simmondsia chinensis HOM05D003864 ORTHO05D004658 3.5e-61 238.8 184 65.2
Sed0008062 Sechium edule HOM05D003864 ORTHO05D004658 5.9e-61 238.0 182 65.4
CARHR133840 Cardamine hirsuta HOM05D003864 ORTHO05D004658 7.7e-61 237.7 200 61.0
Migut.G00209 Erythranthe guttata HOM05D003864 ORTHO05D004658 1.0e-60 237.3 182 65.9
Psat1g187240 Pisum sativum HOM05D003864 ORTHO05D004658 1.0e-60 237.3 175 68.6
THA.LOC104821766 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 1.0e-60 237.3 187 64.2
TPR.G1486 Trifolium pratense HOM05D003864 ORTHO05D004658 1.7e-60 236.5 182 65.9
Glyma.08G088600 Glycine max HOM05D003864 ORTHO05D004658 2.2e-60 236.1 185 65.4
Sed0015457 Sechium edule HOM05D003864 ORTHO05D004658 5.0e-60 235.0 182 64.8
Nn3g21324 Nelumbo nucifera HOM05D003864 ORTHO05D004658 6.5e-60 234.6 198 60.6
Ca_18234_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 8.5e-60 234.2 191 63.4
Lalb_Chr18g0055711 Lupinus albus HOM05D003864 ORTHO05D004658 8.5e-60 234.2 190 64.7
AT2G39080 Arabidopsis thaliana HOM05D003864 ORTHO05D004658 1.1e-59 233.8 184 63.6
Oeu044793.1 Olea europaea HOM05D003864 ORTHO05D004658 1.1e-59 233.8 195 63.6
Phvul.006G161500 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 1.1e-59 233.8 185 65.9
Thhalv10016876m.g Eutrema salsugineum HOM05D003864 ORTHO05D004658 2.5e-59 232.6 186 62.9
LjContig00389g0005087 Lotus japonicus HOM05D003864 ORTHO05D004658 2.5e-59 232.6 182 64.8
MD16G1174800 Malus domestica HOM05D003864 ORTHO05D004658 2.5e-59 232.6 218 57.3
arahy.Tifrunner.gnm1.ann1.CLS5KG Arachis hypogaea HOM05D003864 ORTHO05D004658 3.2e-59 232.3 185 63.2
FvH4_4g17200 Fragaria vesca HOM05D003864 ORTHO05D004658 3.2e-59 232.3 184 64.1
Glyma.05G133900 Glycine max HOM05D003864 ORTHO05D004658 3.2e-59 232.3 185 64.3
Ah.12g064180 Amaranthus hybridus HOM05D003864 ORTHO05D004658 5.5e-59 231.5 193 61.7
EL10Ac6g14524 Beta vulgaris HOM05D003864 ORTHO05D004658 5.5e-59 231.5 195 60.0
Medtr4g094742 Medicago truncatula HOM05D003864 ORTHO05D004658 7.2e-59 231.1 178 64.6
Lsat_1_v5_gn_5_56881 Lactuca sativa HOM05D003864 ORTHO05D004658 1.2e-58 230.3 186 65.1
Lalb_Chr20g0118111 Lupinus albus HOM05D003864 ORTHO05D004658 1.2e-58 230.3 202 59.9
Glyma.13G215300 Glycine max HOM05D003864 ORTHO05D004658 1.6e-58 229.9 182 65.9
Phvul.002G188400 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 1.6e-58 229.9 191 62.3
TPR.G23836 Trifolium pratense HOM05D003864 ORTHO05D004658 1.6e-58 229.9 191 63.9
PGR004G1016 Punica granatum HOM05D003864 ORTHO05D004658 2.1e-58 229.6 187 59.4
Ca_00573_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 2.7e-58 229.2 182 64.3
Os01g0367100 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 3.6e-58 228.8 190 62.6
Sp4g21430 Schrenkiella parvula HOM05D003864 ORTHO05D004658 8.0e-58 227.6 186 62.4
Glyma.15G097900 Glycine max HOM05D003864 ORTHO05D004658 1.0e-57 227.3 183 66.1
SGA_v2.0_scaffold57G20242 Striga asiatica HOM05D003864 ORTHO05D004658 1.4e-57 226.9 181 63.5
Medtr2g020190 Medicago truncatula HOM05D003864 ORTHO05D004658 3.0e-57 225.7 178 64.6
MD13G1173800 Malus domestica HOM05D003864 ORTHO05D004658 6.8e-57 224.6 178 62.9
CDE01G0506 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 9.8e-56 220.7 186 58.1
Zm00001eb131760 Zea mays HOM05D003864 ORTHO05D004658 9.8e-56 220.7 187 61.0
ECA240G1720 Erigeron canadensis HOM05D003864 ORTHO05D004658 4.9e-55 218.4 188 60.1
RcHm_v2.0_Chr4g0421021 Rosa chinensis HOM05D003864 ORTHO05D004658 4.9e-55 218.4 192 58.3
BcaB01g03648 Brassica carinata HOM05D003864 ORTHO05D004658 8.3e-55 217.6 189 58.2
DCAR_002443 Daucus carota HOM05D003864 ORTHO05D004658 8.3e-55 217.6 183 60.1
Lalb_Chr07g0188241 Lupinus albus HOM05D003864 ORTHO05D004658 2.4e-54 216.1 188 59.6
A05p07200 Brassica napus HOM05D003864 ORTHO05D004658 3.1e-54 215.7 183 59.0
BcaC02g12038 Brassica carinata HOM05D003864 ORTHO05D004658 9.2e-54 214.2 183 59.0
Hund20596 Selenicereus undatus HOM05D003864 ORTHO05D004658 9.2e-54 214.2 178 62.9
BolC4t22455H Brassica oleracea HOM05D005803 ORTHO05D008090 1.6e-53 213.4 183 59.0
arahy.Tifrunner.gnm1.ann1.ZU35GG Arachis hypogaea HOM05D003864 ORTHO05D004658 2.7e-53 212.6 199 57.3
DCAR_027110 Daucus carota HOM05D003864 ORTHO05D004658 2.7e-53 212.6 183 61.2
Dinv38324 Davidia involucrata HOM05D003864 ORTHO05D004658 4.5e-53 211.8 159 67.9
Zm00001eb341670 Zea mays HOM05D003864 ORTHO05D004658 5.9e-53 211.5 188 56.9
BcaB02g09145 Brassica carinata HOM05D003864 ORTHO05D004658 1.3e-52 210.3 183 59.0
CDE05G0625 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 5.0e-52 208.4 181 56.4
ATR0706G015 Amborella trichopoda HOM05D003864 ORTHO05D004658 6.6e-52 208.0 197 57.9
C04p08610 Brassica napus HOM05D003864 ORTHO05D004658 6.6e-52 208.0 184 58.2
Cpa.g.sc1008.4 Carica papaya HOM05D003864 ORTHO05D004658 9.5e-51 204.1 188 57.4
SGA_v2.0_scaffold89G27550 Striga asiatica HOM05D003864 ORTHO05D004658 2.8e-50 202.6 182 58.2
arahy.Tifrunner.gnm1.ann1.858I9V Arachis hypogaea HOM05D003864 ORTHO05D004658 2.3e-49 199.5 178 57.3
VMungo0251G3051 Vigna mungo HOM05D003864 ORTHO05D004658 6.8e-49 198.0 178 56.7
arahy.Tifrunner.gnm1.ann1.WPBE4U Arachis hypogaea HOM05D003864 ORTHO05D004658 8.9e-49 197.6 178 57.3
Aa31LG5G20520 Aethionema arabicum HOM05D003864 ORTHO05D004658 1.2e-48 197.2 183 54.1
Mapoly0090s0075 Marchantia polymorpha HOM05D003864 ORTHO05D004658 1.8e-46 189.9 186 54.8
C04p08680 Brassica napus HOM05D003864 ORTHO05D004658 3.2e-46 189.1 190 53.2
HPP92_017180 Vanilla planifolia HOM05D003864 ORTHO05D004658 1.6e-42 176.8 180 50.6
VMungo0540G0878 Vigna mungo HOM05D006883 ORTHO05D008624 5.2e-41 171.8 147 62.6
AagrBONN_evm.TU.Sc2ySwM_344.1910 Anthoceros agrestis HOM05D003864 ORTHO05D004658 5.4e-38 161.8 189 48.7
Pp3c13_19760 Physcomitrium patens HOM05D003864 ORTHO05D004658 1.6e-37 160.2 182 46.2
Pp3c12_8620 Physcomitrium patens HOM05D003864 ORTHO05D004658 2.0e-37 159.8 189 45.5
FAN22G0711 Fragaria x ananassa HOM05D003864 ORTHO05D004658 3.5e-37 159.1 178 48.3
FAN07G1078 Fragaria x ananassa HOM05D003864 ORTHO05D004658 4.6e-37 158.7 178 48.3
FAN17G0790 Fragaria x ananassa HOM05D003864 ORTHO05D004658 1.3e-36 157.1 178 47.8
AUR62002937 Chenopodium quinoa HOM05D003864 ORTHO05D004658 3.0e-36 156.0 189 46.0
AUR62007746 Chenopodium quinoa HOM05D003864 ORTHO05D004658 5.0e-36 155.2 180 46.7
SMO356G0587 Selaginella moellendorffii HOM05D003864 ORTHO05D004658 2.5e-35 152.9 185 44.9
Os01g0367400 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 1.6e-34 150.2 183 42.6
QL06p007393 Quercus lobata HOM05D003864 ORTHO05D004658 2.8e-34 149.4 86 79.1
MBI19_g26585_MAGBIO Magnolia biondii HOM05D003864 ORTHO05D004658 8.1e-34 147.9 183 47.0
CBR_g37156 Chara braunii HOM05D003864 ORTHO05D004658 2.3e-33 146.4 185 43.2
BcaC02g12030 Brassica carinata HOM05D003864 ORTHO05D004658 2.2e-31 139.8 88 72.7
unitig_748.g8370 Utricularia gibba HOM05D003864 ORTHO05D004658 1.9e-30 136.7 83 72.3
CDE12G0314 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 2.1e-29 133.3 84 72.6
Psat7g088240 Pisum sativum HOM05D003864 ORTHO05D004658 4.6e-29 132.1 74 81.1
MBI19_g44903_MAGBIO Magnolia biondii HOM05D003864 ORTHO05D004658 1.3e-28 130.6 160 48.8
HanXRQChr13g0411221 Helianthus annuus HOM05D003864 ORTHO05D004658 2.3e-28 129.8 88 70.5
BolC4t22460H Brassica oleracea HOM05D003864 ORTHO05D004658 3.0e-28 129.4 130 53.1
Dinv44425 Davidia involucrata HOM05D003864 ORTHO05D004658 3.0e-28 129.4 75 80.0
QL06p007391 Quercus lobata HOM05D003864 ORTHO05D004658 6.6e-28 128.3 73 82.2
MCO15G076 Micromonas commoda HOM05D003864 ORTHO05D004658 8.6e-28 127.9 185 41.6
Sc25g0004750 Simmondsia chinensis HOM05D003864 ORTHO05D004658 1.2e-26 124.0 69 84.1
PGSC0003DMG400010656 Solanum tuberosum HOM05D003864 ORTHO05D004658 2.1e-26 123.2 71 80.3
SalBow2G1899 Salvia bowleyana HOM05D003864 ORTHO05D004658 1.4e-25 120.6 75 74.7
unitig_748.g8369 Utricularia gibba HOM05D000472 ORTHO05D000344 1.8e-25 120.2 76 75.0
SHI00297 Sapria himalayana HOM05D003864 ORTHO05D004658 2.3e-25 119.8 280 32.9
Sopen01g029580 Solanum pennellii HOM05D003864 ORTHO05D004658 3.1e-25 119.4 71 78.9
Solyc06g054530.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 6.8e-25 118.2 72 76.4
BolC3t14979H Brassica oleracea HOM05D003864 ORTHO05D004658 8.9e-25 117.9 72 76.4
Sopen06g019600 Solanum pennellii HOM05D003864 ORTHO05D004658 4.4e-24 115.5 72 75.0
MSTRG.21813 Avicennia marina HOM05D003864 ORTHO05D004658 2.2e-23 113.2 73 72.6
PRCOL_00006073 Prasinoderma coloniale HOM05D003864 ORTHO05D004658 2.9e-23 112.8 186 36.0
Cre13.g608000 Chlamydomonas reinhardtii HOM05D003864 ORTHO05D004658 1.1e-19 100.9 194 36.6
SEGI_14152 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 5.6e-19 98.6 73 67.1
FAN12G3853 Fragaria x ananassa HOM05D003864 ORTHO05D004658 9.6e-19 97.8 147 40.8
CSS0015623 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 6.9e-17 91.7 51 80.4
RcHm_v2.0_Chr4g0421081 Rosa chinensis HOM05D003864 ORTHO05D004658 3.4e-16 89.4 56 69.6
Zm00001eb400060 Zea mays HOM05D003864 ORTHO05D004658 8.7e-12 74.7 54 66.7
Medtr8g027510 Medicago truncatula HOM05D003864 ORTHO05D004658 1.3e-10 70.9 41 78.0
Dinv02075 Davidia involucrata HOM05D003864 ORTHO05D035062 2.8e-10 69.7 45 68.9
RcHm_v2.0_Chr4g0421071 Rosa chinensis HOM05D003864 ORTHO05D004658 8.1e-10 68.2 123 38.2
Dinv08007 Davidia involucrata HOM05D003864 ORTHO05D035062 1.4e-09 67.4 43 69.8


User provided reference genes

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