Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038001 Camellia sinensis var. sinensis HOM05D004978 ORTHO05D005621 5.5e-171 604.4 337 100.0
CSS0043108 Camellia sinensis var. sinensis HOM05D035337 ORTHO05D012209 2.3e-12 77.4 113 44.2
CSS0015805 Camellia sinensis var. sinensis HOM05D035337 ORTHO05D012209 1.2e-11 75.1 47 72.3
Haze_04642 Corylus avellana HOM05D004978 ORTHO05D005621 9.8e-11 72.0 77 53.2
Ciclev10019332m.g Citrus clementina HOM05D004978 ORTHO05D005621 4.8e-10 69.7 52 71.2
QL12p042266 Quercus lobata HOM05D004978 ORTHO05D005621 4.8e-10 69.7 52 69.2
vmacro14887 Vaccinium macrocarpon HOM05D004978 ORTHO05D005621 1.1e-09 68.6 52 69.2
CANSAT25G0263 Cannabis sativa HOM05D004978 ORTHO05D005621 1.4e-09 68.2 50 68.0
Cfa006202 Carpinus fangiana HOM05D004978 ORTHO05D005621 1.4e-09 68.2 52 67.3
Rhsim01G0272000 Rhododendron simsii HOM05D004978 ORTHO05D005621 1.4e-09 68.2 52 67.3
Cpa.g.sc52.118 Carica papaya HOM05D004978 ORTHO05D005621 1.8e-09 67.8 53 66.0
TWI75G1276 Tripterygium wilfordii HOM05D004978 ORTHO05D005621 2.4e-09 67.4 55 61.8
CiPaw.07G086800 Carya illinoinensis HOM05D004978 ORTHO05D005621 4.1e-09 66.6 52 65.4
MD03G1258100 Malus domestica HOM05D004978 ORTHO05D005621 4.1e-09 66.6 52 65.4
QL01p000805 Quercus lobata HOM05D004978 ORTHO05D005621 4.1e-09 66.6 52 67.3
TWI12G0244 Tripterygium wilfordii HOM05D004978 ORTHO05D005621 4.1e-09 66.6 53 62.3
Dinv32884 Davidia involucrata HOM05D004978 ORTHO05D005621 5.4e-09 66.2 52 67.3
Manes.05G081900 Manihot esculenta HOM05D004978 ORTHO05D005621 5.4e-09 66.2 52 65.4
Potri.005G215200 Populus trichocarpa HOM05D004978 ORTHO05D005621 5.4e-09 66.2 121 41.3
Prupe.8G234700 Prunus persica HOM05D004978 ORTHO05D005621 7.0e-09 65.9 52 67.3
Atru.chr5.1521 Acer truncatum HOM05D004978 ORTHO05D005621 1.6e-08 64.7 52 65.4
PGR044G1133 Punica granatum HOM05D004978 ORTHO05D005621 2.0e-08 64.3 50 64.0
Thecc.01G271500 Theobroma cacao HOM05D004978 ORTHO05D005621 2.7e-08 63.9 52 63.5
COL.COLO4_09187 Corchorus olitorius HOM05D004978 ORTHO05D005621 4.5e-08 63.2 76 46.1
FvH4_2g22940 Fragaria vesca HOM05D004978 ORTHO05D005621 4.5e-08 63.2 52 61.5
FAN20G1006 Fragaria x ananassa HOM05D004978 ORTHO05D005621 4.5e-08 63.2 52 61.5
FAN24G2655 Fragaria x ananassa HOM05D004978 ORTHO05D005621 4.5e-08 63.2 52 61.5
FAN27G2645 Fragaria x ananassa HOM05D004978 ORTHO05D005621 4.5e-08 63.2 52 61.5
Actinidia24924 Actinidia chinensis HOM05D004978 ORTHO05D005621 5.9e-08 62.8 91 46.2
RcHm_v2.0_Chr6g0289911 Rosa chinensis HOM05D004978 ORTHO05D005621 7.7e-08 62.4 52 61.5
DCAR_002701 Daucus carota HOM05D004978 ORTHO05D005621 1.0e-07 62.0 52 59.6
Gohir.D08G072400 Gossypium hirsutum HOM05D004978 ORTHO05D005621 1.0e-07 62.0 52 59.6
Eucgr.K03324 Eucalyptus grandis HOM05D004978 ORTHO05D005621 1.3e-07 61.6 52 55.8
FAN15G0608 Fragaria x ananassa HOM05D004978 ORTHO05D005621 1.3e-07 61.6 52 59.6
Gohir.A08G063900 Gossypium hirsutum HOM05D004978 ORTHO05D005621 1.3e-07 61.6 52 59.6
CSS0041359 Camellia sinensis var. sinensis HOM05D001381 ORTHO05D001230 1.7e-07 61.2 47 66.0
Gorai.004G076600 Gossypium raimondii HOM05D004978 ORTHO05D005621 1.7e-07 61.2 52 59.6
MD11G1278700 Malus domestica HOM05D004978 ORTHO05D005621 1.7e-07 61.2 52 61.5
Lj2A1164T58 Lonicera japonica HOM05D004978 ORTHO05D005621 2.9e-07 60.5 52 57.7
Sed0016751 Sechium edule HOM05D004978 ORTHO05D005621 2.9e-07 60.5 72 48.6
GSVIVG01003120001 Vitis vinifera HOM05D004978 ORTHO05D005621 2.9e-07 60.5 52 59.6
CsaV3_7G027890 Cucumis sativus L. HOM05D004978 ORTHO05D005621 3.8e-07 60.1 53 56.6
Medtr1g071300 Medicago truncatula HOM05D004978 ORTHO05D005621 5.0e-07 59.7 58 53.4
Nn1g02459 Nelumbo nucifera HOM05D004978 ORTHO05D005621 5.0e-07 59.7 52 59.6
Duzib133G0140 Durio zibethinus HOM05D004978 ORTHO05D005621 6.5e-07 59.3 52 59.6
Thhalv10013262m.g Eutrema salsugineum HOM05D004978 ORTHO05D005621 6.5e-07 59.3 51 58.8
ECA236G1829 Erigeron canadensis HOM05D004978 ORTHO05D005621 8.5e-07 58.9 53 52.8
arahy.Tifrunner.gnm1.ann1.ZM38TH Arachis hypogaea HOM05D004978 ORTHO05D005621 1.1e-06 58.5 54 55.6
Lsat_1_v5_gn_8_93980 Lactuca sativa HOM05D004978 ORTHO05D005621 1.5e-06 58.2 52 53.8
Sc05g0001300 Simmondsia chinensis HOM05D004978 ORTHO05D005621 1.5e-06 58.2 52 57.7
unitig_0.g1132 Utricularia gibba HOM05D004978 ORTHO05D005621 1.5e-06 58.2 53 50.9
Ah.11g050220 Amaranthus hybridus HOM05D004978 ORTHO05D005621 1.9e-06 57.8 52 57.7
CAN.G433.6 Capsicum annuum HOM05D004978 ORTHO05D005621 1.9e-06 57.8 52 53.8
ClCG09G007410 Citrullus lanatus HOM05D004978 ORTHO05D005621 1.9e-06 57.8 53 54.7
arahy.Tifrunner.gnm1.ann1.54WUVN Arachis hypogaea HOM05D004978 ORTHO05D005621 2.5e-06 57.4 52 57.7
Cc01_g19000 Coffea canephora HOM05D004978 ORTHO05D005621 2.5e-06 57.4 52 53.8
Glyma.02G144333 Glycine max HOM05D004978 ORTHO05D005621 2.5e-06 57.4 52 57.7
Glyma.10G029800 Glycine max HOM05D004978 ORTHO05D005621 2.5e-06 57.4 52 57.7
MELO3C015807.2 Cucumis melo HOM05D004978 ORTHO05D005621 3.2e-06 57.0 57 52.6
Oeu014736.1 Olea europaea HOM05D004978 ORTHO05D005621 3.2e-06 57.0 52 53.8
Sed0003895 Sechium edule HOM05D004978 ORTHO05D005621 3.2e-06 57.0 52 55.8
Aa31LG9G14570 Aethionema arabicum HOM05D004978 ORTHO05D005621 4.2e-06 56.6 50 54.0
AL6G31360 Arabidopsis lyrata HOM05D004978 ORTHO05D005621 4.2e-06 56.6 65 50.8
Solyc09g065690.4 Solanum lycopersicum HOM05D004978 ORTHO05D005621 4.2e-06 56.6 67 46.3
Sopen09g027430 Solanum pennellii HOM05D004978 ORTHO05D005621 4.2e-06 56.6 67 46.3
Zm00001eb370120 Zea mays HOM05D004978 ORTHO05D005621 4.2e-06 56.6 53 49.1
Peaxi162Scf00259g00051 Petunia axillaris HOM05D004978 ORTHO05D005621 5.5e-06 56.2 53 50.9
BcaB01g04828 Brassica carinata HOM05D004978 ORTHO05D005621 7.2e-06 55.8 74 45.9
AUR62011971 Chenopodium quinoa HOM05D004978 ORTHO05D005621 7.2e-06 55.8 52 55.8
TAR636G2873 Trochodendron aralioides HOM05D004978 ORTHO05D005621 7.2e-06 55.8 52 59.6
TPR.G34891 Trifolium pratense HOM05D004978 ORTHO05D005621 9.5e-06 55.5 54 51.9


User provided reference genes

Program Settings