Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037989 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D018175 3.2e-44 181.4 94 100.0
CSS0021399 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D018175 1.0e-42 176.4 94 97.9
CSS0009313 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D018175 8.2e-24 113.6 91 69.2
Actinidia39994 Actinidia chinensis HOM05D005077 ORTHO05D006889 2.0e-14 82.4 69 63.8
Haze_04419 Corylus avellana HOM05D005077 ORTHO05D006889 1.7e-13 79.3 66 63.6
Oeu041238.1 Olea europaea HOM05D005077 ORTHO05D006889 1.7e-13 79.3 66 59.1
QL07p018541 Quercus lobata HOM05D005077 ORTHO05D006889 1.7e-13 79.3 67 61.2
Cfa006359 Carpinus fangiana HOM05D005077 ORTHO05D006889 6.5e-13 77.4 66 62.1
TAR362G0145 Trochodendron aralioides HOM05D005077 ORTHO05D006889 6.5e-13 77.4 66 59.1
Rhsim05G0172000 Rhododendron simsii HOM05D005077 ORTHO05D006889 1.4e-12 76.3 71 59.2
HanXRQChr14g0454211 Helianthus annuus HOM05D005077 ORTHO05D006889 1.9e-12 75.9 67 55.2
Lsat_1_v5_gn_2_108321 Lactuca sativa HOM05D005077 ORTHO05D006889 5.5e-12 74.3 67 56.7
CiPaw.07G073200 Carya illinoinensis HOM05D005077 ORTHO05D006889 7.2e-12 73.9 67 58.2
GSVIVG01023486001 Vitis vinifera HOM05D005077 ORTHO05D006889 2.7e-11 72.0 66 59.1
Oeu006006.2 Olea europaea HOM05D005077 ORTHO05D006889 4.6e-11 71.2 66 53.0
DCAR_003547 Daucus carota HOM05D005077 ORTHO05D006889 6.1e-11 70.9 66 54.5
Sabra19G0032000 Salix brachista HOM05D005077 ORTHO05D006889 6.1e-11 70.9 67 53.7
PSO832G3809 Papaver somniferum HOM05D005077 ORTHO05D006889 1.8e-10 69.3 67 53.7
Potri.019G019600 Populus trichocarpa HOM05D005077 ORTHO05D006889 1.8e-10 69.3 66 53.0
RcHm_v2.0_Chr3g0449521 Rosa chinensis HOM05D005077 ORTHO05D006889 1.8e-10 69.3 66 53.0
FvH4_6g01810 Fragaria vesca HOM05D005077 ORTHO05D006889 2.3e-10 68.9 66 53.0
FAN09G0372 Fragaria x ananassa HOM05D005077 ORTHO05D006889 2.3e-10 68.9 66 53.0
FAN14G2113 Fragaria x ananassa HOM05D005077 ORTHO05D006889 2.3e-10 68.9 66 53.0
FAN14G3018 Fragaria x ananassa HOM05D005077 ORTHO05D006889 2.3e-10 68.9 66 53.0
Prupe.6G350500 Prunus persica HOM05D005077 ORTHO05D006889 2.3e-10 68.9 67 55.2
FAN05G3606 Fragaria x ananassa HOM05D005077 ORTHO05D019498 3.0e-10 68.6 66 53.0
PSO210G4243 Papaver somniferum HOM05D005077 ORTHO05D006889 3.0e-10 68.6 67 53.7
Aqoxy5G00195 Aquilegia oxysepala HOM05D005077 ORTHO05D006889 3.9e-10 68.2 66 57.6
CANSAT54G1999 Cannabis sativa HOM05D005077 ORTHO05D006889 5.1e-10 67.8 66 53.0
MD04G1230700 Malus domestica HOM05D005077 ORTHO05D006889 5.1e-10 67.8 66 54.5
Lj2A44T74 Lonicera japonica HOM05D005077 ORTHO05D006889 6.7e-10 67.4 85 42.4
Lj1g0022218 Lotus japonicus HOM05D005077 ORTHO05D006889 6.7e-10 67.4 65 53.8
MSTRG.27374 Avicennia marina HOM05D005077 ORTHO05D006889 8.8e-10 67.0 67 49.3
PGR142G0621 Punica granatum HOM05D005077 ORTHO05D006889 1.1e-09 66.6 66 50.0
Atru.chr2.994 Acer truncatum HOM05D005077 ORTHO05D018175 1.5e-09 66.2 67 53.7
Potri.013G047400 Populus trichocarpa HOM05D005077 ORTHO05D006889 2.0e-09 65.9 67 50.7
Nitab4.5_0003780g0090 Nicotiana tabacum HOM05D005077 ORTHO05D006889 3.3e-09 65.1 66 47.0
Lalb_Chr22g0358841 Lupinus albus HOM05D005077 ORTHO05D006889 4.3e-09 64.7 66 50.0
SalBow3G3009 Salvia bowleyana HOM05D005077 ORTHO05D006889 4.3e-09 64.7 66 51.5
TWI36G1092 Tripterygium wilfordii HOM05D005077 ORTHO05D006889 4.3e-09 64.7 67 52.2
Ca_08303_v3 Cicer arietinum L. HOM05D005077 ORTHO05D006889 5.7e-09 64.3 66 51.5
Phvul.001G114900 Phaseolus vulgaris HOM05D005077 ORTHO05D006889 9.7e-09 63.5 66 50.0
AL3G14430 Arabidopsis lyrata HOM05D005077 ORTHO05D006889 1.3e-08 63.2 67 50.7
Nitab4.5_0006737g0070 Nicotiana tabacum HOM05D005077 ORTHO05D006889 1.7e-08 62.8 66 45.5
AT3G04480 Arabidopsis thaliana HOM05D005077 ORTHO05D006889 2.2e-08 62.4 68 48.5
Eucgr.B02151 Eucalyptus grandis HOM05D005077 ORTHO05D006889 2.8e-08 62.0 67 50.7
Eucgr.B02424 Eucalyptus grandis HOM05D005077 ORTHO05D006889 2.8e-08 62.0 67 50.7
Psat3g087440 Pisum sativum HOM05D005077 ORTHO05D006889 2.8e-08 62.0 66 50.0
CARHR078630 Cardamine hirsuta HOM05D005077 ORTHO05D006889 3.7e-08 61.6 68 50.0
Ciclev10019185m.g Citrus clementina HOM05D005077 ORTHO05D006889 4.8e-08 61.2 67 50.7
Glyma.19G115700 Glycine max HOM05D005077 ORTHO05D006889 4.8e-08 61.2 66 47.0
Thecc.05G270400 Theobroma cacao HOM05D005077 ORTHO05D006889 4.8e-08 61.2 67 50.7
Cc02_g08770 Coffea canephora HOM05D005077 ORTHO05D006889 8.2e-08 60.5 66 47.0
Duzib177G0384 Durio zibethinus HOM05D005077 ORTHO05D006889 8.2e-08 60.5 67 49.3
Thhalv10020155m.g Eutrema salsugineum HOM05D005077 ORTHO05D006889 8.2e-08 60.5 68 50.0
Peaxi162Scf00528g00225 Petunia axillaris HOM05D005077 ORTHO05D006889 1.1e-07 60.1 66 45.5
COL.COLO4_15493 Corchorus olitorius HOM05D005077 ORTHO05D006889 1.4e-07 59.7 66 47.0
MELO3C008703.2 Cucumis melo HOM05D005077 ORTHO05D006889 1.4e-07 59.7 66 43.9
TPR.G4698 Trifolium pratense HOM05D005077 ORTHO05D006889 1.4e-07 59.7 66 48.5
CsaV3_2G009810 Cucumis sativus L. HOM05D005077 ORTHO05D006889 1.8e-07 59.3 67 43.3
Carub.0003s0364 Capsella rubella HOM05D005077 ORTHO05D006889 2.4e-07 58.9 68 47.1
PGSC0003DMG400019116 Solanum tuberosum HOM05D005077 ORTHO05D018175 2.4e-07 58.9 66 45.5
VMungo1383G1518 Vigna mungo HOM05D005077 ORTHO05D006889 2.4e-07 58.9 65 47.7
Manes.08G139800 Manihot esculenta HOM05D005077 ORTHO05D006889 3.1e-07 58.5 66 50.0
THA.LOC104827285 Tarenaya hassleriana HOM05D005077 ORTHO05D006889 5.3e-07 57.8 67 43.3
ECA238G3062 Erigeron canadensis HOM05D005077 ORTHO05D006889 6.9e-07 57.4 59 49.2
Solyc04g010080.3 Solanum lycopersicum HOM05D005077 ORTHO05D006889 6.9e-07 57.4 66 43.9
PGSC0003DMG400011494 Solanum tuberosum HOM05D005077 ORTHO05D006889 6.9e-07 57.4 66 45.5
arahy.Tifrunner.gnm1.ann1.FVV1VG Arachis hypogaea HOM05D005077 ORTHO05D006889 9.1e-07 57.0 66 47.0
BcaB04g19332 Brassica carinata HOM05D005077 ORTHO05D006889 1.2e-06 56.6 65 52.3
Sp3g03330 Schrenkiella parvula HOM05D005077 ORTHO05D006889 1.2e-06 56.6 64 51.6
Sopen04g005220 Solanum pennellii HOM05D005077 ORTHO05D006889 1.2e-06 56.6 66 43.9
Aa31LG5G14920 Aethionema arabicum HOM05D005077 ORTHO05D006889 1.5e-06 56.2 68 41.2
arahy.Tifrunner.gnm1.ann1.2V8KIQ Arachis hypogaea HOM05D005077 ORTHO05D006889 1.5e-06 56.2 66 47.0
BcaC05g30222 Brassica carinata HOM05D005077 ORTHO05D006889 1.5e-06 56.2 63 49.2
Gohir.D11G257100 Gossypium hirsutum HOM05D005077 ORTHO05D006889 2.0e-06 55.8 67 47.8
Gorai.007G275500 Gossypium raimondii HOM05D005077 ORTHO05D006889 2.0e-06 55.8 67 47.8
Hund06905 Selenicereus undatus HOM05D005077 ORTHO05D006889 2.0e-06 55.8 68 47.1
EL10Ac9g21459 Beta vulgaris HOM05D005077 ORTHO05D006889 2.6e-06 55.5 68 45.6
BolC3t16351H Brassica oleracea HOM05D005077 ORTHO05D006889 2.6e-06 55.5 64 50.0
BraA03t12537Z Brassica rapa HOM05D005077 ORTHO05D006889 2.6e-06 55.5 64 50.0
BcaC05g30195 Brassica carinata HOM05D005077 ORTHO05D006889 4.5e-06 54.7 63 49.2
C05p62770 Brassica napus HOM05D005077 ORTHO05D006889 4.5e-06 54.7 63 49.2
arahy.Tifrunner.gnm1.ann1.2UET99 Arachis hypogaea HOM05D005077 ORTHO05D006889 5.9e-06 54.3 66 43.9
A03p33620 Brassica napus HOM05D005077 ORTHO05D006889 7.7e-06 53.9 64 51.6
BolC5t34930H Brassica oleracea HOM05D005077 ORTHO05D006889 7.7e-06 53.9 63 49.2
Medtr7g111650 Medicago truncatula HOM05D005077 ORTHO05D006889 7.7e-06 53.9 65 44.6


User provided reference genes

Program Settings