Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037973 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 1.8e-143 512.7 287 100.0
CSS0008181 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 1.6e-67 260.4 280 55.0
CSS0000366 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 6.9e-66 255.0 280 54.3
Dinv37236 Davidia involucrata HOM05D004973 ORTHO05D006119 8.5e-64 248.1 294 55.4
Dinv35683 Davidia involucrata HOM05D004973 ORTHO05D006119 1.0e-61 241.1 292 58.9
Hma1.2p1_0111F.1_g053560 Hydrangea macrophylla HOM05D004973 ORTHO05D006119 1.0e-56 224.6 292 54.1
Actinidia19731 Actinidia chinensis HOM05D004973 ORTHO05D006119 1.1e-52 211.1 289 52.9
Nitab4.5_0000202g0430 Nicotiana tabacum HOM05D004973 ORTHO05D006119 2.1e-46 190.3 305 43.9
vmacro20083 Vaccinium macrocarpon HOM05D004973 ORTHO05D006119 5.2e-45 185.7 259 57.9
Nitab4.5_0016310g0010 Nicotiana tabacum HOM05D004973 ORTHO05D006119 2.0e-44 183.7 298 44.0
GSVIVG01025573001 Vitis vinifera HOM05D004973 ORTHO05D009107 2.8e-43 179.9 292 45.9
Lj3A975T70 Lonicera japonica HOM05D004973 ORTHO05D006119 3.7e-43 179.5 279 48.7
CiPaw.09G185000 Carya illinoinensis HOM05D004973 ORTHO05D006119 1.8e-42 177.2 277 46.6
QL07p045858 Quercus lobata HOM05D004973 ORTHO05D006119 2.4e-42 176.8 287 44.9
Thecc.05G050500 Theobroma cacao HOM05D004973 ORTHO05D006119 2.0e-41 173.7 282 45.4
Haze_20682 Corylus avellana HOM05D004973 ORTHO05D006119 8.5e-40 168.3 279 46.6
Peaxi162Scf00472g00079 Petunia axillaris HOM05D004973 ORTHO05D006119 1.2e-38 164.5 270 43.0
CiPaw.10G138900 Carya illinoinensis HOM05D004973 ORTHO05D006119 1.8e-37 160.6 333 39.0
PGSC0003DMG400011051 Solanum tuberosum HOM05D004973 ORTHO05D006119 2.3e-37 160.2 269 43.1
Sabra06G0166700 Salix brachista HOM05D004973 ORTHO05D006119 6.8e-37 158.7 297 41.8
Potri.006G216300 Populus trichocarpa HOM05D004973 ORTHO05D006119 3.4e-36 156.4 299 43.8
MSTRG.10290 Avicennia marina HOM05D004973 ORTHO05D006119 7.5e-36 155.2 334 40.1
Cc06_g03330 Coffea canephora HOM05D004973 ORTHO05D006119 9.7e-36 154.8 302 42.7
Sopen10g033860 Solanum pennellii HOM05D004973 ORTHO05D006119 3.7e-35 152.9 272 42.3
Solyc10g084420.2 Solanum lycopersicum HOM05D004973 ORTHO05D006119 6.3e-35 152.1 261 42.5
Ciclev10012401m.g Citrus clementina HOM05D004973 ORTHO05D006119 8.3e-35 151.8 276 44.2
Oeu060067.1 Olea europaea HOM05D004973 ORTHO05D006119 1.4e-34 151.0 314 39.2
Manes.08G000800 Manihot esculenta HOM05D004973 ORTHO05D006119 4.1e-34 149.4 280 42.5
HanXRQChr07g0195961 Helianthus annuus HOM05D004973 ORTHO05D006119 7.0e-34 148.7 301 37.9
Nitab4.5_0000643g0210 Nicotiana tabacum HOM05D004973 ORTHO05D006119 4.5e-33 146.0 266 45.1
Migut.L01647 Erythranthe guttata HOM05D004973 ORTHO05D006119 5.9e-33 145.6 284 38.0
SGA_v2.0_scaffold35G14182 Striga asiatica HOM05D004973 ORTHO05D006119 1.3e-32 144.4 287 38.3
Peaxi162Scf00597g00824 Petunia axillaris HOM05D004973 ORTHO05D006119 1.7e-32 144.1 278 40.6
DCAR_017742 Daucus carota HOM05D004973 ORTHO05D006119 2.2e-32 143.7 285 42.1
MSTRG.26739 Avicennia marina HOM05D004973 ORTHO05D006119 2.9e-32 143.3 326 35.6
Prupe.6G245100 Prunus persica HOM05D004973 ORTHO05D009107 3.2e-31 139.8 290 38.6
Lsat_1_v5_gn_2_110141 Lactuca sativa HOM05D004973 ORTHO05D006119 7.2e-31 138.7 290 41.7
FAN09G0990 Fragaria x ananassa HOM05D004973 ORTHO05D006119 9.4e-31 138.3 283 40.6
FAN14G1622 Fragaria x ananassa HOM05D004973 ORTHO05D006119 1.2e-30 137.9 277 40.4
FAN05G3543 Fragaria x ananassa HOM05D004973 ORTHO05D006119 3.6e-30 136.3 277 41.2
Gohir.A09G160200 Gossypium hirsutum HOM05D004973 ORTHO05D006119 8.8e-29 131.7 266 40.6
RhsimUnG0120800 Rhododendron simsii HOM05D004973 ORTHO05D006119 1.2e-28 131.3 238 45.0
Nn2g12943 Nelumbo nucifera HOM05D004973 ORTHO05D006119 3.4e-28 129.8 263 41.1
Cpa.g.sc114.29 Carica papaya HOM05D004973 ORTHO05D006119 4.4e-28 129.4 265 39.2
Lj2A104T80 Lonicera japonica HOM05D004973 ORTHO05D006119 1.3e-27 127.9 175 51.4
Gohir.A04G077600 Gossypium hirsutum HOM05D004973 ORTHO05D006119 1.7e-27 127.5 274 39.1
Gorai.006G177300 Gossypium raimondii HOM05D004973 ORTHO05D006119 4.8e-27 125.9 274 39.8
COL.COLO4_10304 Corchorus olitorius HOM05D004973 ORTHO05D006119 6.3e-27 125.6 272 39.7
Eucgr.A01206 Eucalyptus grandis HOM05D004973 ORTHO05D006119 6.3e-27 125.6 277 39.7
Potri.016G082700 Populus trichocarpa HOM05D004973 ORTHO05D006119 8.3e-27 125.2 252 43.3
HanXRQChr14g0453421 Helianthus annuus HOM05D004973 ORTHO05D006119 1.1e-26 124.8 275 41.1
Manes.09G071500 Manihot esculenta HOM05D004973 ORTHO05D006119 2.4e-26 123.6 270 38.1
Glyma.10G047400 Glycine max HOM05D004973 ORTHO05D006119 3.1e-26 123.2 288 37.2
DCAR_014954 Daucus carota HOM05D000267 ORTHO05D000298 4.1e-26 122.9 305 37.7
VMungo0720G0246 Vigna mungo HOM05D004973 ORTHO05D006119 5.4e-26 122.5 310 36.5
Gohir.D04G116800 Gossypium hirsutum HOM05D004973 ORTHO05D006119 9.1e-26 121.7 277 38.6
Oeu029113.1 Olea europaea HOM05D004973 ORTHO05D006119 9.1e-26 121.7 264 36.4
ECA238G2925 Erigeron canadensis HOM05D004973 ORTHO05D006119 1.2e-25 121.3 298 36.9
Migut.J00395 Erythranthe guttata HOM05D004973 ORTHO05D006119 1.2e-25 121.3 274 33.6
Gorai.009G421700 Gossypium raimondii HOM05D004973 ORTHO05D006119 1.2e-25 121.3 274 38.3
Phvul.007G161600 Phaseolus vulgaris HOM05D004973 ORTHO05D006119 7.7e-25 118.6 294 40.1
TAR623G0749 Trochodendron aralioides HOM05D004973 ORTHO05D006119 1.3e-24 117.9 184 46.7
Aqoxy4G03126 Aquilegia oxysepala HOM05D004973 ORTHO05D006119 2.9e-24 116.7 268 36.2
MSTRG.19121 Avicennia marina HOM05D004973 ORTHO05D006119 2.5e-23 113.6 99 60.6
arahy.Tifrunner.gnm1.ann1.C8BSPY Arachis hypogaea HOM05D004973 ORTHO05D006119 5.5e-23 112.5 276 37.7
FAN02G2240 Fragaria x ananassa HOM05D004973 ORTHO05D006119 1.6e-22 110.9 211 41.2
MD12G1129800 Malus domestica HOM05D004973 ORTHO05D006119 1.8e-21 107.5 275 37.5
RcHm_v2.0_Chr3g0468111 Rosa chinensis HOM05D004973 ORTHO05D006119 2.3e-21 107.1 196 45.9
CAN.G867.2 Capsicum annuum HOM05D004973 ORTHO05D006119 3.0e-21 106.7 234 37.2
Lj5g0023317 Lotus japonicus HOM05D004973 ORTHO05D006119 4.0e-21 106.3 276 36.6
Nitab4.5_0007045g0010 Nicotiana tabacum HOM05D004973 ORTHO05D006119 5.2e-21 105.9 232 38.4
Nn2g10587 Nelumbo nucifera HOM05D004973 ORTHO05D006119 8.9e-21 105.1 242 36.8
MELO3C003079.2 Cucumis melo HOM05D004973 ORTHO05D006119 1.2e-20 104.8 276 33.7
arahy.Tifrunner.gnm1.ann1.P2DQEA Arachis hypogaea HOM05D004973 ORTHO05D006119 4.4e-20 102.8 290 34.8
Atru.chr8.2512 Acer truncatum HOM05D004973 ORTHO05D006119 5.7e-20 102.4 145 54.5
Gohir.D09G155800 Gossypium hirsutum HOM05D004973 ORTHO05D006119 5.7e-20 102.4 88 64.8
CANSAT80G1895 Cannabis sativa HOM05D004973 ORTHO05D006119 1.3e-19 101.3 279 36.2
CAN.G867.6 Capsicum annuum HOM05D004973 ORTHO05D006119 2.8e-19 100.1 268 36.9
CDE04G2944 Ceratophyllum demersum HOM05D005673 ORTHO05D007081 4.9e-19 99.4 283 35.0
Hund12070 Selenicereus undatus HOM05D004973 ORTHO05D006119 6.3e-19 99.0 272 34.9
Sc01g0003720 Simmondsia chinensis HOM05D004973 ORTHO05D006119 6.3e-19 99.0 274 36.5
ClCG04G008700 Citrullus lanatus HOM05D004973 ORTHO05D006119 1.1e-18 98.2 273 34.1
SalBow4G1465 Salvia bowleyana HOM05D004973 ORTHO05D006119 1.1e-18 98.2 333 30.3
PSO384G3176 Papaver somniferum HOM05D004973 ORTHO05D006119 1.4e-18 97.8 167 40.1
MD04G1111000 Malus domestica HOM05D004973 ORTHO05D006119 1.8e-18 97.4 89 64.0
Lalb_Chr06g0171201 Lupinus albus HOM05D004973 ORTHO05D006119 9.2e-18 95.1 99 54.5
Sed0023997 Sechium edule HOM05D004973 ORTHO05D006119 1.6e-17 94.4 87 63.2
CsaV3_4G024460 Cucumis sativus L. HOM05D004973 ORTHO05D006119 2.0e-17 94.0 271 32.8
FvH4_6g14910 Fragaria vesca HOM05D004973 ORTHO05D006119 4.5e-17 92.8 186 39.8
CAN.G608.34 Capsicum annuum HOM05D004973 ORTHO05D006119 7.8e-17 92.0 235 34.5
PGR004G0295 Punica granatum HOM05D004973 ORTHO05D006119 7.8e-17 92.0 270 38.9
Glyma.19G176500 Glycine max HOM05D004973 ORTHO05D006119 2.3e-16 90.5 211 37.9
TWI53G0396 Tripterygium wilfordii HOM05D004973 ORTHO05D006119 3.9e-16 89.7 142 43.0
PGR004G2597 Punica granatum HOM05D004973 ORTHO05D006119 5.0e-16 89.4 85 58.8
THA.LOC104823441 Tarenaya hassleriana HOM05D004973 ORTHO05D006119 1.1e-15 88.2 163 46.6
Thhalv10017275m.g Eutrema salsugineum HOM05D004973 ORTHO05D006119 1.5e-15 87.8 157 44.6
Medtr1g067220 Medicago truncatula HOM05D004973 ORTHO05D006119 2.5e-15 87.0 277 33.6
MBI05_g16176_MAGBIO Magnolia biondii HOM05D004973 ORTHO05D006119 5.6e-15 85.9 73 64.4
TPR.G35656 Trifolium pratense HOM05D004973 ORTHO05D006119 5.6e-15 85.9 188 38.8
Glyma.03G176000 Glycine max HOM05D004973 ORTHO05D006119 1.2e-14 84.7 113 49.6
AL4G33680 Arabidopsis lyrata HOM05D004973 ORTHO05D006119 1.6e-14 84.3 90 56.7
RhsimUnG0120900 Rhododendron simsii HOM05D004973 ORTHO05D006119 2.8e-14 83.6 54 81.5
Lalb_Chr02g0153461 Lupinus albus HOM05D004973 ORTHO05D006119 3.6e-14 83.2 109 54.1
C04p65800 Brassica napus HOM05D004973 ORTHO05D006119 6.1e-14 82.4 163 41.1
BolC4t28082H Brassica oleracea HOM05D004973 ORTHO05D006119 6.1e-14 82.4 163 41.1
Psat6g069760 Pisum sativum HOM05D004973 ORTHO05D006119 8.0e-14 82.0 86 55.8
EL10Ac7g17266 Beta vulgaris HOM05D004973 ORTHO05D006119 1.4e-13 81.3 278 33.5
A04p28480 Brassica napus HOM05D004973 ORTHO05D006119 1.4e-13 81.3 162 40.7
BcaNung06611 Brassica carinata HOM05D004973 ORTHO05D006119 2.3e-13 80.5 156 41.0
BcaNung06612 Brassica carinata HOM05D004973 ORTHO05D006119 3.1e-13 80.1 90 54.4
Carub.0004s1921 Capsella rubella HOM05D004973 ORTHO05D006119 4.0e-13 79.7 100 52.0
A03p20600 Brassica napus HOM05D000861 ORTHO05D001799 6.8e-13 79.0 172 37.8
BraA03t11302Z Brassica rapa HOM05D000861 ORTHO05D001799 6.8e-13 79.0 75 58.7
C03p24200 Brassica napus HOM05D000861 ORTHO05D001799 1.5e-12 77.8 72 59.7
BolC3t14814H Brassica oleracea HOM05D004973 ORTHO05D006119 1.5e-12 77.8 72 59.7
Eucgr.K03187 Eucalyptus grandis HOM05D004973 ORTHO05D006119 1.5e-12 77.8 268 32.1
Os03g0283400 Oryza sativa ssp. japonica HOM05D004973 ORTHO05D006119 1.5e-12 77.8 290 29.3
CsaV3_3G035290 Cucumis sativus L. HOM05D004973 ORTHO05D006119 2.0e-12 77.4 277 30.0
BraA04t18326Z Brassica rapa HOM05D004973 ORTHO05D006119 2.6e-12 77.0 164 39.0
AT2G37300 Arabidopsis thaliana HOM05D004973 ORTHO05D006119 3.4e-12 76.6 159 38.4
MELO3C009296.2 Cucumis melo HOM05D004973 ORTHO05D006119 3.4e-12 76.6 279 29.0
VMungo1383G2298 Vigna mungo HOM05D004973 ORTHO05D006119 7.5e-12 75.5 82 54.9
A05p08610 Brassica napus HOM05D004973 ORTHO05D006119 9.8e-12 75.1 70 61.4
Glyma.13G135200 Glycine max HOM05D004973 ORTHO05D006119 1.7e-11 74.3 244 33.2
THA.LOC104805339 Tarenaya hassleriana HOM05D004973 ORTHO05D006119 3.7e-11 73.2 95 53.7
unitig_60.g25816 Utricularia gibba HOM05D004973 ORTHO05D006119 3.7e-11 73.2 260 31.5
BcaC02g07519 Brassica carinata HOM05D004973 ORTHO05D006119 6.4e-11 72.4 73 58.9
C04p10700 Brassica napus HOM05D004973 ORTHO05D006119 8.3e-11 72.0 73 58.9
ClCG10G020720 Citrullus lanatus HOM05D004973 ORTHO05D006119 1.9e-10 70.9 276 27.5
Zm00001eb012960 Zea mays HOM05D004973 ORTHO05D006119 1.9e-10 70.9 256 30.5
arahy.Tifrunner.gnm1.ann1.X85SHR Arachis hypogaea HOM05D004973 ORTHO05D006119 2.4e-10 70.5 80 51.2
Sp4g19620 Schrenkiella parvula HOM05D004973 ORTHO05D006119 4.1e-10 69.7 255 32.5
arahy.Tifrunner.gnm1.ann1.4HMS3J Arachis hypogaea HOM05D004973 ORTHO05D006119 7.0e-10 68.9 72 52.8
HPP92_001696 Vanilla planifolia HOM05D004973 ORTHO05D006119 4.6e-09 66.2 257 30.4
PGSC0003DMG400002023 Solanum tuberosum HOM05D004973 ORTHO05D006119 6.0e-09 65.9 78 51.3
Sed0025194 Sechium edule HOM05D004973 ORTHO05D006119 7.8e-09 65.5 275 29.8
PGSC0003DMG400018718 Solanum tuberosum HOM05D004973 ORTHO05D006119 1.3e-08 64.7 66 54.5
CARHR132290 Cardamine hirsuta HOM05D004973 ORTHO05D006119 2.5e-07 60.5 177 33.3
SalBow6G1645 Salvia bowleyana HOM05D005926 ORTHO05D007001 1.2e-06 58.2 92 40.2
Ah.04g163700 Amaranthus hybridus HOM05D005926 ORTHO05D007001 2.8e-06 57.0 85 40.0
Atru.chr12.975 Acer truncatum HOM05D005926 ORTHO05D007001 4.7e-06 56.2 88 40.9
COL.COLO4_06813 Corchorus olitorius HOM05D005926 ORTHO05D007001 6.2e-06 55.8 79 40.5
Dinv30648 Davidia involucrata HOM05D005926 ORTHO05D007001 8.0e-06 55.5 88 42.0
Gohir.A05G398500 Gossypium hirsutum HOM05D005926 ORTHO05D007001 8.0e-06 55.5 94 38.3
QL04p042256 Quercus lobata HOM05D005926 ORTHO05D007001 8.0e-06 55.5 87 41.4
Sopen11g003350 Solanum pennellii HOM05D005926 ORTHO05D007001 8.0e-06 55.5 84 44.0


User provided reference genes

Program Settings