Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037971 Camellia sinensis var. sinensis HOM05D001259 ORTHO05D001103 6.8e-42 173.7 96 100.0
CSS0038801 Camellia sinensis var. sinensis HOM05D001259 ORTHO05D001103 4.4e-33 144.4 95 87.4
CSS0037025 Camellia sinensis var. sinensis HOM05D001259 ORTHO05D001103 4.0e-26 121.3 96 79.2
CSS0007335 Camellia sinensis var. sinensis HOM05D001259 ORTHO05D001103 1.5e-25 119.4 96 76.0
Dinv41665 Davidia involucrata HOM05D001259 ORTHO05D001103 1.0e-21 106.7 99 66.7
CSS0008651 Camellia sinensis var. sinensis HOM05D001259 ORTHO05D001103 1.3e-21 106.3 97 64.9
Dinv36689 Davidia involucrata HOM05D001259 ORTHO05D001103 6.6e-21 104.0 100 61.0
Rhsim03G0236800 Rhododendron simsii HOM05D001259 ORTHO05D001103 8.6e-21 103.6 96 64.6
QL02p041645 Quercus lobata HOM05D001259 ORTHO05D001103 1.9e-20 102.4 98 61.2
QL02p041676 Quercus lobata HOM05D001259 ORTHO05D001103 1.9e-20 102.4 98 61.2
GSVIVG01015304001 Vitis vinifera HOM05D001259 ORTHO05D001103 1.9e-20 102.4 97 62.9
Hma1.2p1_0012F.1_g007350 Hydrangea macrophylla HOM05D001259 ORTHO05D001103 2.5e-20 102.1 96 65.6
Potri.018G087500 Populus trichocarpa HOM05D001259 ORTHO05D001103 3.3e-20 101.7 99 59.6
Manes.16G108400 Manihot esculenta HOM05D001259 ORTHO05D001103 1.2e-19 99.8 100 59.0
Sabra18G0075700 Salix brachista HOM05D001259 ORTHO05D001103 1.6e-19 99.4 100 58.0
Cfa003183 Carpinus fangiana HOM05D001259 ORTHO05D001103 4.7e-19 97.8 100 61.0
Nitab4.5_0000566g0080 Nicotiana tabacum HOM05D001259 ORTHO05D001103 6.2e-19 97.4 96 60.4
CSS0005097 Camellia sinensis var. sinensis HOM05D001259 ORTHO05D001103 1.1e-18 96.7 94 64.9
Actinidia32653 Actinidia chinensis HOM05D001259 ORTHO05D001103 1.4e-18 96.3 102 56.9
Ciclev10008680m.g Citrus clementina HOM05D001259 ORTHO05D001103 1.4e-18 96.3 100 56.0
Cc06_g10450 Coffea canephora HOM05D001259 ORTHO05D001103 1.4e-18 96.3 83 65.1
COL.COLO4_34746 Corchorus olitorius HOM05D001259 ORTHO05D001103 1.4e-18 96.3 95 62.1
HanXRQChr03g0061201 Helianthus annuus HOM05D001259 ORTHO05D001103 1.8e-18 95.9 99 59.6
Prupe.7G220100 Prunus persica HOM05D001259 ORTHO05D001103 1.8e-18 95.9 97 59.8
Ca_17363_v3 Cicer arietinum L. HOM05D002451 ORTHO05D007901 2.3e-18 95.5 99 56.6
Medtr8g102510 Medicago truncatula HOM05D001259 ORTHO05D001103 4.0e-18 94.7 99 57.6
MSTRG.26384 Avicennia marina HOM05D001259 ORTHO05D001103 5.2e-18 94.4 99 57.6
Atru.chr7.1461 Acer truncatum HOM05D001259 ORTHO05D001103 8.9e-18 93.6 101 54.5
ECA240G0832 Erigeron canadensis HOM05D001259 ORTHO05D001103 8.9e-18 93.6 99 58.6
vmacro06251 Vaccinium macrocarpon HOM05D001259 ORTHO05D001103 8.9e-18 93.6 99 59.6
Thecc.09G100900 Theobroma cacao HOM05D001259 ORTHO05D001103 1.2e-17 93.2 97 59.8
CiPaw.04G158200 Carya illinoinensis HOM05D001259 ORTHO05D001103 1.5e-17 92.8 98 59.2
Phvul.002G308900 Phaseolus vulgaris HOM05D001259 ORTHO05D001103 2.0e-17 92.4 98 56.1
ECA240G1616 Erigeron canadensis HOM05D001259 ORTHO05D001103 2.6e-17 92.0 99 57.6
Lj4g0011285 Lotus japonicus HOM05D001259 ORTHO05D001103 2.6e-17 92.0 98 56.1
Oeu064181.1 Olea europaea HOM05D001259 ORTHO05D001103 2.6e-17 92.0 97 57.7
Psat7g016960 Pisum sativum HOM05D001259 ORTHO05D001103 3.4e-17 91.7 98 56.1
Glyma.05G226900 Glycine max HOM05D001259 ORTHO05D001103 4.4e-17 91.3 98 57.1
Sc18g0001480 Simmondsia chinensis HOM05D001259 ORTHO05D001103 4.4e-17 91.3 97 53.6
DCAR_010690 Daucus carota HOM05D001259 ORTHO05D001103 5.8e-17 90.9 99 54.5
Glyma.08G033700 Glycine max HOM05D001259 ORTHO05D001103 5.8e-17 90.9 98 57.1
TAR624G0650 Trochodendron aralioides HOM05D001259 ORTHO05D001103 9.9e-17 90.1 98 55.1
CAN.G1241.32 Capsicum annuum HOM05D001259 ORTHO05D001103 1.3e-16 89.7 94 55.3
Eucgr.C00998 Eucalyptus grandis HOM05D001259 ORTHO05D001103 1.3e-16 89.7 98 57.1
Nn6g35325 Nelumbo nucifera HOM05D001259 ORTHO05D001103 1.7e-16 89.4 101 52.5
Potri.006G164748 Populus trichocarpa HOM05D001259 ORTHO05D001103 2.2e-16 89.0 99 55.6
Lalb_Chr24g0397321 Lupinus albus HOM05D001259 ORTHO05D001103 2.9e-16 88.6 94 54.3
PGR142G4262 Punica granatum HOM05D001259 ORTHO05D001103 2.9e-16 88.6 99 56.6
TWI63G0321 Tripterygium wilfordii HOM05D001259 ORTHO05D001103 2.9e-16 88.6 101 54.5
TPR.G23469 Trifolium pratense HOM05D001259 ORTHO05D001103 4.9e-16 87.8 98 56.1
CiPaw.04G158100 Carya illinoinensis HOM05D001259 ORTHO05D001103 6.4e-16 87.4 99 55.6
MD15G1196300 Malus domestica HOM05D001259 ORTHO05D001103 6.4e-16 87.4 86 58.1
PSO210G1731 Papaver somniferum HOM05D001259 ORTHO05D001103 8.3e-16 87.0 103 53.4
TPR.G21374 Trifolium pratense HOM05D001259 ORTHO05D001103 8.3e-16 87.0 98 52.0
Lj2g0015337 Lotus japonicus HOM05D001259 ORTHO05D001103 1.1e-15 86.7 85 60.0
Solyc12g008460.2 Solanum lycopersicum HOM05D001259 ORTHO05D001103 1.4e-15 86.3 94 52.1
PGSC0003DMG400000297 Solanum tuberosum HOM05D001259 ORTHO05D001103 1.4e-15 86.3 94 52.1
FAN28G1996 Fragaria x ananassa HOM05D001259 ORTHO05D001103 1.9e-15 85.9 95 53.7
Hund09111 Selenicereus undatus HOM05D001259 ORTHO05D001103 1.9e-15 85.9 103 51.5
VMungo0251G0814 Vigna mungo HOM05D001259 ORTHO05D001103 1.9e-15 85.9 99 51.5
MD02G1065400 Malus domestica HOM05D001259 ORTHO05D001103 2.4e-15 85.5 96 54.2
Sed0008394 Sechium edule HOM05D001259 ORTHO05D001103 2.4e-15 85.5 85 57.6
Sopen12g003410 Solanum pennellii HOM05D001259 ORTHO05D001103 2.4e-15 85.5 94 52.1
AUR62021411 Chenopodium quinoa HOM05D001259 ORTHO05D001103 3.2e-15 85.1 100 56.0
Migut.K00537 Erythranthe guttata HOM05D001259 ORTHO05D001103 3.2e-15 85.1 101 55.4
RcHm_v2.0_Chr2g0091841 Rosa chinensis HOM05D001259 ORTHO05D001103 3.2e-15 85.1 95 53.7
CsaV3_1G039770 Cucumis sativus L. HOM05D001259 ORTHO05D001103 4.1e-15 84.7 83 59.0
Lalb_Chr05g0223221 Lupinus albus HOM05D001259 ORTHO05D001103 4.1e-15 84.7 99 50.5
Sabra18G0075800 Salix brachista HOM05D001259 ORTHO05D001103 5.4e-15 84.3 99 50.5
MELO3C015411.2 Cucumis melo HOM05D003954 ORTHO05D004627 9.2e-15 83.6 81 59.3
PSO210G2822 Papaver somniferum HOM05D001259 ORTHO05D001103 9.2e-15 83.6 103 51.5
Sabra06G0126600 Salix brachista HOM05D001259 ORTHO05D001103 9.2e-15 83.6 99 53.5
Glyma.01G008100 Glycine max HOM05D001259 ORTHO05D001103 1.2e-14 83.2 97 51.5
CANSAT56G3717 Cannabis sativa HOM05D001259 ORTHO05D001103 1.6e-14 82.8 95 50.5
Aa31LG9G1990 Aethionema arabicum HOM05D001259 ORTHO05D001103 2.1e-14 82.4 94 53.2
arahy.Tifrunner.gnm1.ann1.VH3KGW Arachis hypogaea HOM05D001259 ORTHO05D001103 2.1e-14 82.4 96 54.2
ClCG03G016160 Citrullus lanatus HOM05D001259 ORTHO05D001103 2.1e-14 82.4 95 52.6
arahy.Tifrunner.gnm1.ann1.436L1R Arachis hypogaea HOM05D001259 ORTHO05D001103 2.7e-14 82.0 96 53.1
BcaC09g50235 Brassica carinata HOM05D001259 ORTHO05D001103 3.5e-14 81.6 94 52.1
BolC1t02691H Brassica oleracea HOM05D001259 ORTHO05D001103 3.5e-14 81.6 94 52.1
Gohir.A06G067100 Gossypium hirsutum HOM05D001259 ORTHO05D001103 3.5e-14 81.6 98 56.1
Gohir.A08G243000 Gossypium hirsutum HOM05D001259 ORTHO05D001103 3.5e-14 81.6 79 60.8
Psat1g047160 Pisum sativum HOM05D001259 ORTHO05D001103 3.5e-14 81.6 98 49.0
AL7G40100 Arabidopsis lyrata HOM05D001259 ORTHO05D001103 4.6e-14 81.3 95 50.5
BcaNung00274 Brassica carinata HOM05D001259 ORTHO05D001103 6.0e-14 80.9 94 51.1
AUR62010915 Chenopodium quinoa HOM05D001259 ORTHO05D001103 6.0e-14 80.9 82 58.5
Gorai.004G281800 Gossypium raimondii HOM05D001259 ORTHO05D001103 6.0e-14 80.9 83 61.4
A05p27130 Brassica napus HOM05D001259 ORTHO05D001103 7.8e-14 80.5 101 48.5
Medtr6g088680 Medicago truncatula HOM05D001259 ORTHO05D001103 1.0e-13 80.1 100 48.0
Ca_25570_v3 Cicer arietinum L. HOM05D001259 ORTHO05D001103 1.3e-13 79.7 84 52.4
Gohir.D08G263900 Gossypium hirsutum HOM05D001259 ORTHO05D001103 1.3e-13 79.7 83 60.2
C01p27630 Brassica napus HOM05D001259 ORTHO05D001103 1.7e-13 79.3 94 50.0
BraA05t21599Z Brassica rapa HOM05D001259 ORTHO05D001103 1.7e-13 79.3 101 47.5
THA.LOC104802547 Tarenaya hassleriana HOM05D001259 ORTHO05D001103 2.3e-13 79.0 98 48.0
arahy.Tifrunner.gnm1.ann1.E41BXM Arachis hypogaea HOM05D001259 ORTHO05D001103 3.0e-13 78.6 94 47.9
Carub.0007s2646 Capsella rubella HOM05D001259 ORTHO05D001103 3.0e-13 78.6 95 48.4
Lsat_1_v5_gn_7_39781 Lactuca sativa HOM05D001259 ORTHO05D001103 3.0e-13 78.6 99 48.5
Phvul.004G170500 Phaseolus vulgaris HOM05D001259 ORTHO05D001103 3.9e-13 78.2 97 47.4
VMungo0464G1422 Vigna mungo HOM05D001259 ORTHO05D001103 3.9e-13 78.2 97 47.4
BcaB06g26265 Brassica carinata HOM05D001259 ORTHO05D001103 5.1e-13 77.8 101 46.5
BcaC05g28153 Brassica carinata HOM05D001259 ORTHO05D001103 5.1e-13 77.8 101 46.5
C05p41870 Brassica napus HOM05D001259 ORTHO05D001103 5.1e-13 77.8 101 46.5
BolC5t32920H Brassica oleracea HOM05D001259 ORTHO05D001103 5.1e-13 77.8 101 46.5
Glyma.16G078200 Glycine max HOM05D001259 ORTHO05D001103 5.1e-13 77.8 97 48.5
SalBow1G3959 Salvia bowleyana HOM05D001259 ORTHO05D001103 5.1e-13 77.8 99 51.5
SalBow1G5873 Salvia bowleyana HOM05D001259 ORTHO05D001103 5.1e-13 77.8 99 51.5
FAN23G1183 Fragaria x ananassa HOM05D001259 ORTHO05D001103 6.6e-13 77.4 106 48.1
Thhalv10025458m.g Eutrema salsugineum HOM05D001259 ORTHO05D001103 8.6e-13 77.0 94 50.0
Sp7g13670 Schrenkiella parvula HOM05D001259 ORTHO05D001103 1.1e-12 76.6 94 48.9
Carub.0003s2164 Capsella rubella HOM05D001259 ORTHO05D001103 1.5e-12 76.3 96 47.9
AT3G21600 Arabidopsis thaliana HOM05D001259 ORTHO05D001103 2.5e-12 75.5 96 47.9
AL3G35720 Arabidopsis lyrata HOM05D001259 ORTHO05D001103 4.3e-12 74.7 96 47.9
CDE05G3309 Ceratophyllum demersum HOM05D001259 ORTHO05D001103 4.3e-12 74.7 91 50.5
A01p22130 Brassica napus HOM05D001259 ORTHO05D001103 7.3e-12 73.9 94 47.9
BraA01t02122Z Brassica rapa HOM05D001259 ORTHO05D001103 7.3e-12 73.9 94 47.9
EL10Ac8g18382 Beta vulgaris HOM05D001259 ORTHO05D001103 9.6e-12 73.6 82 51.2
CARHR097570 Cardamine hirsuta HOM05D001259 ORTHO05D001103 9.6e-12 73.6 97 47.4
Aa31LG8G8260 Aethionema arabicum HOM05D001259 ORTHO05D001103 1.6e-11 72.8 95 48.4
Thhalv10020930m.g Eutrema salsugineum HOM05D001259 ORTHO05D001103 1.6e-11 72.8 99 46.5
Zm00001eb361690 Zea mays HOM05D001259 ORTHO05D001103 2.1e-11 72.4 73 54.8
Os01g0723100 Oryza sativa ssp. japonica HOM05D001259 ORTHO05D001103 3.6e-11 71.6 103 45.6
Phvul.004G014300 Phaseolus vulgaris HOM05D001259 ORTHO05D001103 3.6e-11 71.6 93 47.3
Sp3g19620 Schrenkiella parvula HOM05D001259 ORTHO05D001103 3.6e-11 71.6 100 46.0
Peaxi162Scf00665g00339 Petunia axillaris HOM05D001259 ORTHO05D001103 8.1e-11 70.5 71 57.7
Actinidia07453 Actinidia chinensis HOM05D001259 ORTHO05D001103 1.1e-10 70.1 55 69.1
CANSAT56G3268 Cannabis sativa HOM05D001259 ORTHO05D001103 1.1e-10 70.1 95 49.5
CANSAT56G1287 Cannabis sativa HOM05D001259 ORTHO05D001103 3.1e-10 68.6 95 48.4
MBI04_g20309_MAGBIO Magnolia biondii HOM05D001259 ORTHO05D001103 4.0e-10 68.2 95 48.4
CAN.G3392.1 Capsicum annuum HOM05D001259 ORTHO05D001103 5.2e-10 67.8 55 67.3
Lj7A665T29 Lonicera japonica HOM05D001259 ORTHO05D001103 9.9e-09 63.5 55 61.8
MBI04_g20310_MAGBIO Magnolia biondii HOM05D001259 ORTHO05D001103 1.4e-07 59.7 100 40.0
MBI04_g37501_MAGBIO Magnolia biondii HOM05D001259 ORTHO05D001103 1.4e-07 59.7 100 40.0
Duzib168G0295 Durio zibethinus HOM05D001259 ORTHO05D001103 1.9e-07 59.3 49 65.3
CARHR097550 Cardamine hirsuta HOM05D001259 ORTHO05D001103 7.1e-07 57.4 96 40.6
Gorai.010G077000 Gossypium raimondii HOM05D001259 ORTHO05D001103 7.1e-07 57.4 39 74.4
Gohir.D06G065700 Gossypium hirsutum HOM05D001259 ORTHO05D001103 2.1e-06 55.8 39 71.8
SEGI_26193 Sequoiadendron giganteum HOM05D001259 ORTHO05D001103 6.0e-06 54.3 84 41.7


User provided reference genes

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