Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037967 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 2.2e-73 278.9 140 100.0
Atru.chr12.1818 Acer truncatum HOM05D005356 ORTHO05D006596 9.0e-35 150.6 75 92.0
Nn1g09227 Nelumbo nucifera HOM05D005356 ORTHO05D006596 1.2e-34 150.2 75 93.3
FvH4_7g34281 Fragaria vesca HOM05D005356 ORTHO05D006596 4.5e-34 148.3 75 93.3
FAN03G1362 Fragaria x ananassa HOM05D005356 ORTHO05D006596 4.5e-34 148.3 75 93.3
Thecc.05G227000 Theobroma cacao HOM05D005356 ORTHO05D006596 4.5e-34 148.3 84 84.5
Sabra13G0065300 Salix brachista HOM05D005356 ORTHO05D006596 1.3e-33 146.7 75 90.7
Hma1.2p1_0419F.1_g149580 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 3.8e-33 145.2 75 89.3
Hund11857 Selenicereus undatus HOM05D005356 ORTHO05D006596 3.8e-33 145.2 75 89.3
Migut.N03237 Erythranthe guttata HOM05D005356 ORTHO05D006596 6.4e-33 144.4 76 89.5
Prupe.2G329800 Prunus persica HOM05D005356 ORTHO05D006596 6.4e-33 144.4 84 82.1
TAR629G3426 Trochodendron aralioides HOM05D005356 ORTHO05D006596 6.4e-33 144.4 75 89.3
Sabra19G0053800 Salix brachista HOM05D005356 ORTHO05D006596 8.4e-33 144.1 75 88.0
Gohir.A08G221634 Gossypium hirsutum HOM05D005356 ORTHO05D006596 1.1e-32 143.7 75 88.0
Gohir.D08G239900 Gossypium hirsutum HOM05D005356 ORTHO05D006596 1.1e-32 143.7 75 88.0
Gorai.004G255200 Gossypium raimondii HOM05D005356 ORTHO05D006596 1.1e-32 143.7 75 88.0
TAR375G1012 Trochodendron aralioides HOM05D005356 ORTHO05D006596 1.1e-32 143.7 75 90.7
Hma1.2p1_0564F.1_g179310 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 1.4e-32 143.3 75 88.0
Lj3A883T53 Lonicera japonica HOM05D005356 ORTHO05D006596 1.4e-32 143.3 105 67.6
MD07G1311300 Malus domestica HOM05D005356 ORTHO05D006596 1.4e-32 143.3 75 90.7
RcHm_v2.0_Chr1g0384641 Rosa chinensis HOM05D005356 ORTHO05D006596 1.4e-32 143.3 75 90.7
vmacro22188 Vaccinium macrocarpon HOM05D005356 ORTHO05D006596 1.4e-32 143.3 76 88.2
Actinidia04557 Actinidia chinensis HOM05D005356 ORTHO05D006596 1.9e-32 142.9 78 85.9
CiPaw.06G037000 Carya illinoinensis HOM05D005356 ORTHO05D006596 1.9e-32 142.9 130 61.5
CsaV3_2G035860 Cucumis sativus L. HOM05D005356 ORTHO05D006596 1.9e-32 142.9 85 76.5
Dinv17238 Davidia involucrata HOM05D005356 ORTHO05D006596 1.9e-32 142.9 75 89.3
Eucgr.A02993 Eucalyptus grandis HOM05D005356 ORTHO05D006596 1.9e-32 142.9 75 88.0
Nn3g19190 Nelumbo nucifera HOM05D005356 ORTHO05D006596 1.9e-32 142.9 75 88.0
CANSAT21G1370 Cannabis sativa HOM05D005356 ORTHO05D006596 2.4e-32 142.5 76 88.2
CANSAT21G1742 Cannabis sativa HOM05D005356 ORTHO05D006596 2.4e-32 142.5 76 88.2
CiPaw.05G210900 Carya illinoinensis HOM05D005356 ORTHO05D006596 2.4e-32 142.5 130 61.5
Nitab4.5_0002990g0020 Nicotiana tabacum HOM05D005356 ORTHO05D006596 2.4e-32 142.5 131 58.8
MSTRG.24194 Avicennia marina HOM05D005356 ORTHO05D006596 3.2e-32 142.1 76 85.5
Duzib177G1190 Durio zibethinus HOM05D005356 ORTHO05D006596 3.2e-32 142.1 74 89.2
Ciclev10031697m.g Citrus clementina HOM05D005356 ORTHO05D006596 4.2e-32 141.7 84 81.0
DCAR_009031 Daucus carota HOM05D005356 ORTHO05D006596 4.2e-32 141.7 75 90.7
Medtr0172s0020 Medicago truncatula HOM05D005356 ORTHO05D006596 4.2e-32 141.7 84 78.6
Sed0019262 Sechium edule HOM05D005356 ORTHO05D006596 4.2e-32 141.7 76 81.6
TPR.G9827 Trifolium pratense HOM05D005356 ORTHO05D006596 4.2e-32 141.7 84 78.6
COL.COLO4_32921 Corchorus olitorius HOM05D005356 ORTHO05D006596 7.1e-32 141.0 84 82.1
MELO3C024754.2 Cucumis melo HOM05D005356 ORTHO05D006596 7.1e-32 141.0 76 81.6
Peaxi162Scf00263g00323 Petunia axillaris HOM05D005356 ORTHO05D006596 7.1e-32 141.0 131 57.3
ATR0369G003 Amborella trichopoda HOM05D005356 ORTHO05D006596 1.2e-31 140.2 75 86.7
Manes.08G159200 Manihot esculenta HOM05D005356 ORTHO05D006596 1.2e-31 140.2 127 61.4
Psat0s2502g0200 Pisum sativum HOM05D005356 ORTHO05D006596 1.2e-31 140.2 84 77.4
PGSC0003DMG400024812 Solanum tuberosum HOM05D005356 ORTHO05D006596 1.2e-31 140.2 127 59.1
MD01G1240200 Malus domestica HOM05D005356 ORTHO05D006596 1.6e-31 139.8 75 89.3
CAN.G2009.1 Capsicum annuum HOM05D005356 ORTHO05D006596 2.1e-31 139.4 131 58.0
ClCG02G007870 Citrullus lanatus HOM05D005356 ORTHO05D006596 2.1e-31 139.4 107 65.4
Manes.09G130400 Manihot esculenta HOM05D005356 ORTHO05D006596 2.1e-31 139.4 84 78.6
Nitab4.5_0000299g0040 Nicotiana tabacum HOM05D005356 ORTHO05D006596 2.1e-31 139.4 131 58.0
GSVIVG01024263001 Vitis vinifera HOM05D005356 ORTHO05D006596 2.7e-31 139.0 76 86.8
EL10Ac3g05893 Beta vulgaris HOM05D005356 ORTHO05D006596 3.5e-31 138.7 76 84.2
Glyma.12G013400 Glycine max HOM05D005356 ORTHO05D006596 3.5e-31 138.7 84 77.4
Lsat_1_v5_gn_9_47941 Lactuca sativa HOM05D005356 ORTHO05D006596 3.5e-31 138.7 75 82.7
PGR008G0003 Punica granatum HOM05D005356 ORTHO05D006596 3.5e-31 138.7 74 86.5
PGR119G0933 Punica granatum HOM05D005356 ORTHO05D006596 3.5e-31 138.7 74 86.5
PGR131G0008 Punica granatum HOM05D005356 ORTHO05D006596 3.5e-31 138.7 74 86.5
Solyc04g064720.3 Solanum lycopersicum HOM05D005356 ORTHO05D006596 3.5e-31 138.7 127 58.3
Sopen04g026680 Solanum pennellii HOM05D005356 ORTHO05D006596 3.5e-31 138.7 127 58.3
THA.LOC104820830 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 3.5e-31 138.7 84 75.0
C02p09120 Brassica napus HOM05D005356 ORTHO05D006596 4.6e-31 138.3 84 76.2
Ca_19620_v3 Cicer arietinum L. HOM05D005356 ORTHO05D006596 4.6e-31 138.3 84 75.0
Sed0017544 Sechium edule HOM05D005356 ORTHO05D006596 4.6e-31 138.3 76 80.3
Aqoxy1G01762 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 6.0e-31 137.9 75 84.0
AL6G28610 Arabidopsis lyrata HOM05D005356 ORTHO05D006596 6.0e-31 137.9 84 76.2
AT5G17520 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 6.0e-31 137.9 84 76.2
Sp6g26700 Schrenkiella parvula HOM05D005356 ORTHO05D006596 6.0e-31 137.9 84 72.6
arahy.Tifrunner.gnm1.ann1.RW14FX Arachis hypogaea HOM05D005356 ORTHO05D006596 7.9e-31 137.5 84 76.2
BcaC03g13524 Brassica carinata HOM05D005356 ORTHO05D006596 7.9e-31 137.5 84 75.0
A02p04240 Brassica napus HOM05D005356 ORTHO05D006596 7.9e-31 137.5 84 75.0
BolC2t06824H Brassica oleracea HOM05D005356 ORTHO05D006596 7.9e-31 137.5 84 75.0
BraA02t05387Z Brassica rapa HOM05D005356 ORTHO05D006596 7.9e-31 137.5 84 75.0
Gohir.A11G226000 Gossypium hirsutum HOM05D005356 ORTHO05D006596 7.9e-31 137.5 81 80.2
Gohir.D11G234600 Gossypium hirsutum HOM05D005356 ORTHO05D006596 7.9e-31 137.5 81 80.2
Gorai.007G246900 Gossypium raimondii HOM05D005356 ORTHO05D006596 7.9e-31 137.5 81 80.2
VMungo0647G2360 Vigna mungo HOM05D005356 ORTHO05D006596 7.9e-31 137.5 128 57.8
Cpa.g.sc43.152 Carica papaya HOM05D005356 ORTHO05D006596 1.0e-30 137.1 73 89.0
AUR62002252 Chenopodium quinoa HOM05D005356 ORTHO05D006596 1.0e-30 137.1 75 82.7
Cc10_g12920 Coffea canephora HOM05D005356 ORTHO05D006596 1.0e-30 137.1 75 84.0
CARHR195670 Cardamine hirsuta HOM05D005356 ORTHO05D006596 1.3e-30 136.7 84 75.0
Phvul.011G016500 Phaseolus vulgaris HOM05D005356 ORTHO05D006596 1.3e-30 136.7 84 76.2
SalBow6G3313 Salvia bowleyana HOM05D005356 ORTHO05D006596 1.3e-30 136.7 75 85.3
Potri.013G076100 Populus trichocarpa HOM05D005356 ORTHO05D006596 1.8e-30 136.3 84 77.4
Aa31LG11G12150 Aethionema arabicum HOM05D005356 ORTHO05D006596 2.3e-30 136.0 84 73.8
arahy.Tifrunner.gnm1.ann1.509DQ1 Arachis hypogaea HOM05D005356 ORTHO05D006596 2.3e-30 136.0 84 75.0
Os04g0602400 Oryza sativa ssp. japonica HOM05D005356 ORTHO05D006596 2.3e-30 136.0 75 84.0
BcaC04g18781 Brassica carinata HOM05D005356 ORTHO05D006596 3.0e-30 135.6 84 73.8
A10p21870 Brassica napus HOM05D005356 ORTHO05D006596 3.0e-30 135.6 84 73.8
BraA10t44246Z Brassica rapa HOM05D005356 ORTHO05D006596 3.0e-30 135.6 84 73.8
CANSAT21G0168 Cannabis sativa HOM05D005356 ORTHO05D006596 3.0e-30 135.6 76 84.2
SGA_v2.0_scaffold19G08642 Striga asiatica HOM05D005356 ORTHO05D006596 3.0e-30 135.6 76 81.6
THA.LOC104802905 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 3.0e-30 135.6 75 82.7
Migut.C01041 Erythranthe guttata HOM05D005356 ORTHO05D006596 3.9e-30 135.2 75 82.7
Aqoxy3G04210 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 5.1e-30 134.8 75 81.3
AUR62015463 Chenopodium quinoa HOM05D005356 ORTHO05D006596 5.1e-30 134.8 75 81.3
Haze_00348 Corylus avellana HOM05D005356 ORTHO05D006596 8.7e-30 134.0 70 90.0
Lj3g0010653 Lotus japonicus HOM05D005356 ORTHO05D006596 8.7e-30 134.0 84 73.8
SalBow7G2700 Salvia bowleyana HOM05D005356 ORTHO05D006596 1.5e-29 133.3 84 73.8
Carub.0006s1575 Capsella rubella HOM05D005356 ORTHO05D006596 1.9e-29 132.9 84 72.6
BcaB08g36764 Brassica carinata HOM05D005356 ORTHO05D006596 2.5e-29 132.5 84 72.6
A10p21860 Brassica napus HOM05D005356 ORTHO05D006596 2.5e-29 132.5 84 72.6
C09p59620 Brassica napus HOM05D005356 ORTHO05D006596 2.5e-29 132.5 84 72.6
BolC9t58801H Brassica oleracea HOM05D005356 ORTHO05D006596 2.5e-29 132.5 84 72.6
Oeu015013.2 Olea europaea HOM05D005356 ORTHO05D006596 2.5e-29 132.5 78 79.5
PSO063G2098 Papaver somniferum HOM05D005356 ORTHO05D006596 2.5e-29 132.5 75 78.7
Rhsim09G0214300 Rhododendron simsii HOM05D005356 ORTHO05D006596 3.3e-29 132.1 73 86.3
Lalb_Chr01g0000721 Lupinus albus HOM05D005356 ORTHO05D006596 5.6e-29 131.3 84 70.2
Oeu030531.2 Olea europaea HOM05D005356 ORTHO05D006596 5.6e-29 131.3 75 81.3
PSO782G1515 Papaver somniferum HOM05D005356 ORTHO05D006596 7.4e-29 131.0 72 80.6
HPP92_022764 Vanilla planifolia HOM05D005356 ORTHO05D006596 2.1e-28 129.4 76 76.3
ECA232G1465 Erigeron canadensis HOM05D005356 ORTHO05D006596 2.8e-28 129.0 103 61.2
HanXRQChr05g0139001 Helianthus annuus HOM05D005356 ORTHO05D006596 1.1e-27 127.1 135 54.1
SEGI_37553 Sequoiadendron giganteum HOM05D005356 ORTHO05D006596 2.4e-27 125.9 75 74.7
Pp3c24_890 Physcomitrium patens HOM05D005356 ORTHO05D006596 2.6e-26 122.5 75 72.0
Pp3c24_840 Physcomitrium patens HOM05D005356 ORTHO05D006596 3.4e-26 122.1 75 70.7
Pp3c23_14070 Physcomitrium patens HOM05D005356 ORTHO05D006596 3.8e-25 118.6 75 73.3
MSTRG.22381 Avicennia marina HOM05D005356 ORTHO05D006596 5.5e-24 114.8 75 69.3
Pp3c6_18710 Physcomitrium patens HOM05D005356 ORTHO05D006596 4.6e-23 111.7 75 65.3
unitig_744.g24563 Utricularia gibba HOM05D005356 ORTHO05D006596 1.3e-22 110.2 98 58.2
AagrBONN_evm.TU.Sc2ySwM_228.477 Anthoceros agrestis HOM05D005356 ORTHO05D006596 6.7e-22 107.8 74 67.6
SMO012G0030 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 1.1e-21 107.1 74 63.5
SMO118G0252 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 1.1e-21 107.1 82 61.0
Mapoly0051s0014 Marchantia polymorpha HOM05D005356 ORTHO05D006596 6.2e-20 101.3 129 41.1
Thhalv10016106m.g Eutrema salsugineum HOM05D005356 ORTHO05D006596 2.6e-18 95.9 60 71.7
Glyma.09G223400 Glycine max HOM05D005356 ORTHO05D006596 1.3e-17 93.6 58 74.1
MCO10G093 Micromonas commoda HOM05D005356 ORTHO05D006596 6.5e-17 91.3 71 62.0
CBR_g17686 Chara braunii HOM05D005356 ORTHO05D006596 5.5e-16 88.2 75 52.0
Actinidia33804 Actinidia chinensis HOM05D005356 ORTHO05D006596 1.3e-12 77.0 70 58.6
Cre12.g486600 Chlamydomonas reinhardtii HOM05D005356 ORTHO05D006596 5.3e-11 71.6 61 52.5
MBI04_g30781_MAGBIO Magnolia biondii HOM05D005356 ORTHO05D006596 5.9e-10 68.2 34 91.2
PRCOL_00004977 Prasinoderma coloniale HOM05D005356 ORTHO05D006596 5.5e-08 61.6 67 46.3


User provided reference genes

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