Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037950 Camellia sinensis var. sinensis HOM05D007227 ORTHO05D002252 2.6e-59 231.9 118 100.0
Dinv42073 Davidia involucrata HOM05D007227 ORTHO05D002252 1.7e-26 122.9 121 52.1
Dinv23539 Davidia involucrata HOM05D007227 ORTHO05D002252 1.9e-25 119.4 107 59.8
CSS0026369 Camellia sinensis var. sinensis HOM05D007227 ORTHO05D002252 7.3e-22 107.5 121 55.4
Rhsim11G0174800 Rhododendron simsii HOM05D007227 ORTHO05D002252 8.7e-15 84.0 96 46.9
CSS0038929 Camellia sinensis var. sinensis HOM05D007227 ORTHO05D002252 7.4e-14 80.9 94 53.2
Actinidia00511 Actinidia chinensis HOM05D007227 ORTHO05D002252 4.8e-13 78.2 95 51.6
CiPaw.05G063200 Carya illinoinensis HOM05D007227 ORTHO05D002252 6.2e-13 77.8 96 43.8
CiPaw.06G136700 Carya illinoinensis HOM05D007227 ORTHO05D002252 3.1e-12 75.5 87 44.8
Oeu014341.1 Olea europaea HOM05D007227 ORTHO05D002252 3.1e-12 75.5 95 43.2
GSVIVG01031940001 Vitis vinifera HOM05D007227 ORTHO05D002252 3.1e-12 75.5 96 41.7
Cfa005018 Carpinus fangiana HOM05D007227 ORTHO05D002252 5.3e-12 74.7 116 37.9
Lj9C368G9 Lonicera japonica HOM05D007227 ORTHO05D002252 5.3e-12 74.7 72 50.0
Phvul.011G046400 Phaseolus vulgaris HOM05D007227 ORTHO05D002252 6.9e-12 74.3 107 39.3
MSTRG.20093 Avicennia marina HOM05D007227 ORTHO05D002252 9.0e-12 73.9 87 46.0
Manes.17G100100 Manihot esculenta HOM05D007227 ORTHO05D002252 9.0e-12 73.9 92 43.5
Psat7g141720 Pisum sativum HOM05D007227 ORTHO05D002252 9.0e-12 73.9 99 44.4
vmacro17500 Vaccinium macrocarpon HOM05D017364 ORTHO05D002252 1.5e-11 73.2 91 51.6
QL11p043287 Quercus lobata HOM05D007227 ORTHO05D002252 4.5e-11 71.6 103 42.7
Sabra04G0101600 Salix brachista HOM05D007227 ORTHO05D002252 9.9e-11 70.5 95 44.2
EL10Ac9g21739 Beta vulgaris HOM05D007227 ORTHO05D002252 2.2e-10 69.3 96 38.5
Gohir.D01G169400 Gossypium hirsutum HOM05D007227 ORTHO05D002252 2.2e-10 69.3 121 38.8
Thecc.02G037700 Theobroma cacao HOM05D007227 ORTHO05D002252 2.2e-10 69.3 104 40.4
TPR.G38124 Trifolium pratense HOM05D007227 ORTHO05D002252 2.2e-10 69.3 87 43.7
Gohir.A01G178500 Gossypium hirsutum HOM05D007227 ORTHO05D002252 3.8e-10 68.6 121 38.8
Medtr4g069770 Medicago truncatula HOM05D007227 ORTHO05D002252 3.8e-10 68.6 94 40.4
Peaxi162Scf00016g00938 Petunia axillaris HOM05D007227 ORTHO05D002252 4.9e-10 68.2 107 39.3
TPR.G9008 Trifolium pratense HOM05D007227 ORTHO05D002252 4.9e-10 68.2 94 40.4
Lalb_Chr23g0265441 Lupinus albus HOM05D007227 ORTHO05D002252 6.4e-10 67.8 103 38.8
VMungo1127G0518 Vigna mungo HOM05D007227 ORTHO05D002252 6.4e-10 67.8 94 38.3
Eucgr.I01259 Eucalyptus grandis HOM05D007227 ORTHO05D002252 1.1e-09 67.0 94 38.3
Gorai.002G211000 Gossypium raimondii HOM05D007227 ORTHO05D002252 1.1e-09 67.0 103 41.7
Manes.15G164600 Manihot esculenta HOM05D007227 ORTHO05D002252 1.1e-09 67.0 88 43.2
TWI31G0501 Tripterygium wilfordii HOM05D007227 ORTHO05D002252 1.1e-09 67.0 105 37.1
Dinv23538 Davidia involucrata HOM05D007556 ORTHO05D002252 1.4e-09 66.6 96 38.5
Lj3g0002713 Lotus japonicus HOM05D007227 ORTHO05D002252 1.4e-09 66.6 94 41.5
Gorai.005G261600 Gossypium raimondii HOM05D007227 ORTHO05D002252 1.9e-09 66.2 92 37.0
Sc08g0000440 Simmondsia chinensis HOM05D007227 ORTHO05D002252 1.9e-09 66.2 89 41.6
Cc07_g14570 Coffea canephora HOM05D007227 ORTHO05D002252 2.4e-09 65.9 94 36.2
Glyma.11G119200 Glycine max HOM05D007227 ORTHO05D002252 2.4e-09 65.9 98 38.8
Gohir.A03G212200 Gossypium hirsutum HOM05D007227 ORTHO05D002252 3.2e-09 65.5 86 41.9
Gohir.D02G233600 Gossypium hirsutum HOM05D007227 ORTHO05D002252 3.2e-09 65.5 86 41.9
Potri.009G114701 Populus trichocarpa HOM05D007556 ORTHO05D002252 3.2e-09 65.5 103 35.9
Ah.01g019500 Amaranthus hybridus HOM05D007227 ORTHO05D002252 4.2e-09 65.1 104 33.7
MSTRG.27703 Avicennia marina HOM05D007227 ORTHO05D002252 5.5e-09 64.7 89 42.7
Glyma.06G013300 Glycine max HOM05D007227 ORTHO05D002252 5.5e-09 64.7 94 38.3
Glyma.04G013400 Glycine max HOM05D007227 ORTHO05D002252 9.3e-09 63.9 94 39.4
Medtr5g095980 Medicago truncatula HOM05D007227 ORTHO05D002252 9.3e-09 63.9 106 38.7
Actinidia00509 Actinidia chinensis HOM05D007556 ORTHO05D002252 1.2e-08 63.5 89 42.7
Glyma.12G044400 Glycine max HOM05D007227 ORTHO05D002252 1.2e-08 63.5 89 40.4
SalBow6G0041 Salvia bowleyana HOM05D007227 ORTHO05D002252 1.6e-08 63.2 88 37.5
SalBow6G1279 Salvia bowleyana HOM05D007227 ORTHO05D002252 1.6e-08 63.2 88 37.5
COL.COLO4_17856 Corchorus olitorius HOM05D007227 ORTHO05D002252 2.1e-08 62.8 98 43.9
Glyma.02G300900 Glycine max HOM05D007227 ORTHO05D002252 2.1e-08 62.8 76 42.1
HanXRQChr01g0007701 Helianthus annuus HOM05D017364 ORTHO05D002252 2.7e-08 62.4 90 36.7
Lalb_Chr19g0138601 Lupinus albus HOM05D007227 ORTHO05D002252 2.7e-08 62.4 95 40.0
LjContig00081g0025580 Lotus japonicus HOM05D007227 ORTHO05D002252 3.5e-08 62.0 89 37.1
TWI75G0964 Tripterygium wilfordii HOM05D007227 ORTHO05D002252 3.5e-08 62.0 94 39.4
LjContig00272g0019714 Lotus japonicus HOM05D007227 ORTHO05D002252 4.6e-08 61.6 104 33.7
AUR62011338 Chenopodium quinoa HOM05D007227 ORTHO05D002252 6.0e-08 61.2 78 42.3
Peaxi162Scf00684g00413 Petunia axillaris HOM05D007556 ORTHO05D002252 6.0e-08 61.2 98 35.7
Potri.004G153200 Populus trichocarpa HOM05D007227 ORTHO05D002252 6.0e-08 61.2 95 38.9
PGR142G1531 Punica granatum HOM05D007227 ORTHO05D002252 6.0e-08 61.2 106 39.6
Ciclev10029608m.g Citrus clementina HOM05D007227 ORTHO05D002252 7.9e-08 60.8 96 34.4
LjContig00081g0009252 Lotus japonicus HOM05D007227 ORTHO05D002252 7.9e-08 60.8 104 34.6
arahy.Tifrunner.gnm1.ann1.16ZZBQ Arachis hypogaea HOM05D007227 ORTHO05D002252 1.0e-07 60.5 96 40.6
Potri.009G114400 Populus trichocarpa HOM05D007227 ORTHO05D002252 1.0e-07 60.5 92 38.0
Potri.009G114800 Populus trichocarpa HOM05D007556 ORTHO05D002252 1.0e-07 60.5 86 37.2
GSVIVG01031948001 Vitis vinifera HOM05D007556 ORTHO05D002252 1.3e-07 60.1 100 36.0
arahy.Tifrunner.gnm1.ann1.ZTQ30L Arachis hypogaea HOM05D007227 ORTHO05D002252 1.8e-07 59.7 93 38.7
TPR.G8589 Trifolium pratense HOM05D007227 ORTHO05D002252 1.8e-07 59.7 90 35.6
arahy.Tifrunner.gnm1.ann1.9WD8WJ Arachis hypogaea HOM05D007227 ORTHO05D002252 2.3e-07 59.3 88 37.5
Lsat_1_v5_gn_9_109540 Lactuca sativa HOM05D007227 ORTHO05D002252 2.3e-07 59.3 70 41.4
EL10Ac4g09227 Beta vulgaris HOM05D037403 ORTHO05D002252 3.0e-07 58.9 112 36.6
Nitab4.5_0001794g0120 Nicotiana tabacum HOM05D007227 ORTHO05D002252 3.0e-07 58.9 95 34.7
BcaC08g43126 Brassica carinata HOM05D009461 ORTHO05D002252 3.9e-07 58.5 81 40.7
C06p04010 Brassica napus HOM05D009461 ORTHO05D002252 3.9e-07 58.5 81 40.7
Lj1g0025376 Lotus japonicus HOM05D007227 ORTHO05D002252 3.9e-07 58.5 87 39.1
Duzib132G0468 Durio zibethinus HOM05D007227 ORTHO05D002252 5.1e-07 58.2 101 37.6
HanXRQChr16g0524731 Helianthus annuus HOM05D017364 ORTHO05D002252 5.1e-07 58.2 90 35.6
MD10G1078100 Malus domestica HOM05D007227 ORTHO05D002252 5.1e-07 58.2 85 44.7
Psat2g007160 Pisum sativum HOM05D007227 ORTHO05D002252 5.1e-07 58.2 95 37.9
Sed0019925 Sechium edule HOM05D007227 ORTHO05D002252 5.1e-07 58.2 93 34.4
Hund00277 Selenicereus undatus HOM05D013587 ORTHO05D002252 5.1e-07 58.2 87 37.9
Nitab4.5_0002168g0020 Nicotiana tabacum HOM05D007556 ORTHO05D002252 6.7e-07 57.8 92 38.0
arahy.Tifrunner.gnm1.ann1.BHH580 Arachis hypogaea HOM05D007227 ORTHO05D002252 8.7e-07 57.4 83 38.6
BcaB07g33682 Brassica carinata HOM05D009461 ORTHO05D002252 1.1e-06 57.0 81 39.5
BolC6t35534H Brassica oleracea HOM05D009461 ORTHO05D002252 1.1e-06 57.0 81 39.5
AUR62011343 Chenopodium quinoa HOM05D013587 ORTHO05D002252 1.5e-06 56.6 85 36.5
AUR62011345 Chenopodium quinoa HOM05D013587 ORTHO05D002252 1.5e-06 56.6 85 36.5
Phvul.009G024600 Phaseolus vulgaris HOM05D007227 ORTHO05D002252 1.9e-06 56.2 100 34.0
COL.COLO4_37463 Corchorus olitorius HOM05D007556 ORTHO05D002252 2.5e-06 55.8 116 30.2
FAN15G1220 Fragaria x ananassa HOM05D007227 ORTHO05D002252 2.5e-06 55.8 85 37.6
FAN27G2103 Fragaria x ananassa HOM05D007227 ORTHO05D002252 2.5e-06 55.8 85 37.6
Nitab4.5_0000959g0110 Nicotiana tabacum HOM05D007556 ORTHO05D002252 2.5e-06 55.8 89 36.0
BcaC05g27512 Brassica carinata HOM05D009461 ORTHO05D002252 4.3e-06 55.1 81 38.3
C05p34820 Brassica napus HOM05D009461 ORTHO05D002252 4.3e-06 55.1 81 38.3
FvH4_2g08520 Fragaria vesca HOM05D007227 ORTHO05D002252 4.3e-06 55.1 85 38.8
FAN24G3084 Fragaria x ananassa HOM05D007227 ORTHO05D002252 4.3e-06 55.1 85 38.8
Manes.07G098400 Manihot esculenta HOM05D007556 ORTHO05D002252 4.3e-06 55.1 96 36.5
QL11p043321 Quercus lobata HOM05D007556 ORTHO05D002252 4.3e-06 55.1 91 36.3
GSVIVG01031943001 Vitis vinifera HOM05D007556 ORTHO05D002252 4.3e-06 55.1 93 37.6
A06p03910 Brassica napus HOM05D009461 ORTHO05D002252 5.6e-06 54.7 80 38.8
BraA06t23599Z Brassica rapa HOM05D009461 ORTHO05D002252 5.6e-06 54.7 80 38.8
Thhalv10011902m.g Eutrema salsugineum HOM05D009461 ORTHO05D002252 5.6e-06 54.7 81 40.7
Aqoxy5G01668 Aquilegia oxysepala HOM05D007556 ORTHO05D002252 7.4e-06 54.3 74 39.2
BcaC06g36704 Brassica carinata HOM05D009461 ORTHO05D002252 7.4e-06 54.3 81 37.0
A07p00480 Brassica napus HOM05D009461 ORTHO05D002252 7.4e-06 54.3 81 37.0
C07p00920 Brassica napus HOM05D009461 ORTHO05D002252 7.4e-06 54.3 81 37.0
BolC7t40528H Brassica oleracea HOM05D009461 ORTHO05D002252 7.4e-06 54.3 81 37.0
BraA07t27839Z Brassica rapa HOM05D009461 ORTHO05D002252 7.4e-06 54.3 81 37.0
Nitab4.5_0010789g0020 Nicotiana tabacum HOM05D007556 ORTHO05D002252 7.4e-06 54.3 95 33.7
Sc18g0004580 Simmondsia chinensis HOM05D007556 ORTHO05D002252 7.4e-06 54.3 92 33.7
CARHR039300 Cardamine hirsuta HOM05D009461 ORTHO05D002252 9.6e-06 53.9 85 36.5
MD00G1082000 Malus domestica HOM05D007227 ORTHO05D002252 9.6e-06 53.9 85 40.0
SalBow3G1687 Salvia bowleyana HOM05D007227 ORTHO05D002252 9.6e-06 53.9 93 38.7
vmacro17186 Vaccinium macrocarpon HOM05D007556 ORTHO05D002252 9.6e-06 53.9 99 36.4


User provided reference genes

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