Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037942 Camellia sinensis var. sinensis HOM05D007964 ORTHO05D010090 5.2e-33 143.7 67 100.0
CSS0037867 Camellia sinensis var. sinensis HOM05D007964 ORTHO05D010090 2.7e-29 131.3 67 92.5
CSS0006430 Camellia sinensis var. sinensis HOM05D007964 ORTHO05D010090 3.5e-29 131.0 67 92.5
Rhsim06G0092800 Rhododendron simsii HOM05D007964 ORTHO05D010090 5.3e-17 90.5 67 70.1
Oeu046067.1 Olea europaea HOM05D007964 ORTHO05D010090 5.8e-16 87.0 48 81.2
Haze_17821 Corylus avellana HOM05D007964 ORTHO05D010090 9.9e-16 86.3 64 67.2
DCAR_001195 Daucus carota HOM05D007964 ORTHO05D010090 1.3e-15 85.9 67 67.2
CAN.G1183.20 Capsicum annuum HOM05D007964 ORTHO05D010090 2.9e-15 84.7 65 63.1
SGA_v2.0_scaffold54G19690 Striga asiatica HOM05D007964 ORTHO05D010090 2.9e-15 84.7 68 61.8
QL02p036563 Quercus lobata HOM05D007964 ORTHO05D010090 8.4e-15 83.2 62 69.4
QL02p037092 Quercus lobata HOM05D007964 ORTHO05D010090 8.4e-15 83.2 62 69.4
Cfa018267 Carpinus fangiana HOM05D007964 ORTHO05D010090 1.9e-14 82.0 64 67.2
CiPaw.15G011700 Carya illinoinensis HOM05D007964 ORTHO05D010090 4.2e-14 80.9 59 71.2
Hma1.2p1_0678F.1_g202130 Hydrangea macrophylla HOM05D007964 ORTHO05D010090 9.3e-14 79.7 58 72.4
Migut.N02947 Erythranthe guttata HOM05D007964 ORTHO05D010090 1.2e-13 79.3 60 68.3
Migut.O00757 Erythranthe guttata HOM05D007964 ORTHO05D010090 1.2e-13 79.3 60 68.3
Ah.05g167820 Amaranthus hybridus HOM05D007964 ORTHO05D010090 2.7e-13 78.2 44 81.8
Sopen04g028110 Solanum pennellii HOM05D007964 ORTHO05D010090 4.6e-13 77.4 57 63.2
PGSC0003DMG400025075 Solanum tuberosum HOM05D007964 ORTHO05D010090 4.6e-13 77.4 57 63.2
Peaxi162Scf00360g00092 Petunia axillaris HOM05D007964 ORTHO05D010090 6.0e-13 77.0 66 56.1
Lsat_1_v5_gn_6_100061 Lactuca sativa HOM05D007964 ORTHO05D010090 7.9e-13 76.6 44 77.3
Nitab4.5_0003443g0080 Nicotiana tabacum HOM05D007964 ORTHO05D010090 1.3e-12 75.9 49 73.5
Nn5g28859 Nelumbo nucifera HOM05D007964 ORTHO05D010090 1.8e-12 75.5 43 81.4
Nitab4.5_0003178g0050 Nicotiana tabacum HOM05D007964 ORTHO05D010090 1.8e-12 75.5 49 71.4
Phvul.004G087600 Phaseolus vulgaris HOM05D007964 ORTHO05D010090 1.8e-12 75.5 60 66.7
EL10Ac1g01623 Beta vulgaris HOM05D007964 ORTHO05D010090 3.0e-12 74.7 53 69.8
COL.COLO4_29112 Corchorus olitorius HOM05D007964 ORTHO05D010090 5.1e-12 73.9 48 66.7
CANSAT25G1394 Cannabis sativa HOM05D007964 ORTHO05D010090 1.5e-11 72.4 47 68.1
Ca_04662_v3 Cicer arietinum L. HOM05D007964 ORTHO05D010090 1.5e-11 72.4 47 74.5
Medtr6g039830 Medicago truncatula HOM05D007964 ORTHO05D010090 1.5e-11 72.4 47 72.3
Sabra05G0151100 Salix brachista HOM05D007964 ORTHO05D010090 1.9e-11 72.0 59 61.0
Atru.chr13.1988 Acer truncatum HOM05D007964 ORTHO05D010090 2.5e-11 71.6 46 71.7
AUR62026621 Chenopodium quinoa HOM05D007964 ORTHO05D010090 2.5e-11 71.6 44 75.0
AUR62034908 Chenopodium quinoa HOM05D007964 ORTHO05D010090 2.5e-11 71.6 44 75.0
SalBow6G4546 Salvia bowleyana HOM05D007964 ORTHO05D010090 3.3e-11 71.2 45 71.1
Ciclev10003908m.g Citrus clementina HOM05D007964 ORTHO05D010090 4.3e-11 70.9 57 56.1
Gorai.010G134000 Gossypium raimondii HOM05D007964 ORTHO05D010090 4.3e-11 70.9 48 66.7
Lalb_Chr19g0130001 Lupinus albus HOM05D007964 ORTHO05D010090 4.3e-11 70.9 46 71.7
Sed0027049 Sechium edule HOM05D007964 ORTHO05D010090 4.3e-11 70.9 59 55.9
BraA07t31354Z Brassica rapa HOM05D007964 ORTHO05D010090 5.6e-11 70.5 69 56.5
Psat0s1172g0240 Pisum sativum HOM05D007964 ORTHO05D010090 5.6e-11 70.5 47 68.1
Prupe.8G043200 Prunus persica HOM05D007964 ORTHO05D010090 5.6e-11 70.5 50 74.0
BcaC08g46600 Brassica carinata HOM05D007964 ORTHO05D010090 9.6e-11 69.7 69 55.1
A07p37890 Brassica napus HOM05D007964 ORTHO05D010090 9.6e-11 69.7 69 55.1
C06p45790 Brassica napus HOM05D007964 ORTHO05D010090 9.6e-11 69.7 69 55.1
BolC6t39631H Brassica oleracea HOM05D007964 ORTHO05D010090 9.6e-11 69.7 69 55.1
Glyma.02G078400 Glycine max HOM05D007964 ORTHO05D010090 9.6e-11 69.7 63 57.1
Carub.0002s1850 Capsella rubella HOM05D007964 ORTHO05D010090 1.3e-10 69.3 53 60.4
Gohir.A06G112000 Gossypium hirsutum HOM05D007964 ORTHO05D010090 1.3e-10 69.3 48 68.8
Potri.005G198200 Populus trichocarpa HOM05D007964 ORTHO05D010090 1.3e-10 69.3 59 59.3
Aa31LG4G8900 Aethionema arabicum HOM05D007964 ORTHO05D010090 1.6e-10 68.9 60 56.7
AL2G31310 Arabidopsis lyrata HOM05D007964 ORTHO05D010090 1.6e-10 68.9 60 56.7
AT1G71740 Arabidopsis thaliana HOM05D007964 ORTHO05D010090 1.6e-10 68.9 60 56.7
CARHR291050 Cardamine hirsuta HOM05D007964 ORTHO05D010090 1.6e-10 68.9 60 56.7
Thhalv10019796m.g Eutrema salsugineum HOM05D007964 ORTHO05D010090 1.6e-10 68.9 60 58.3
Glyma.16G161400 Glycine max HOM05D007964 ORTHO05D010090 1.6e-10 68.9 37 83.8
Gohir.D06G116200 Gossypium hirsutum HOM05D007964 ORTHO05D010090 1.6e-10 68.9 48 64.6
Manes.02G184300 Manihot esculenta HOM05D007964 ORTHO05D010090 1.6e-10 68.9 46 69.6
Sp5g26770 Schrenkiella parvula HOM05D007964 ORTHO05D010090 1.6e-10 68.9 55 65.5
Thecc.08G162400 Theobroma cacao HOM05D007964 ORTHO05D010090 3.7e-10 67.8 49 67.3
FAN27G1192 Fragaria x ananassa HOM05D007964 ORTHO05D010090 4.8e-10 67.4 43 74.4
MELO3C019968.2 Cucumis melo HOM05D007964 ORTHO05D010090 8.2e-10 66.6 40 70.0
ClCG08G007250 Citrullus lanatus HOM05D007964 ORTHO05D010090 1.4e-09 65.9 40 67.5
FvH4_2g12880 Fragaria vesca HOM05D007964 ORTHO05D010090 1.4e-09 65.9 43 72.1
FAN20G1166 Fragaria x ananassa HOM05D007964 ORTHO05D010090 1.4e-09 65.9 56 60.7
FAN24G2710 Fragaria x ananassa HOM05D007964 ORTHO05D010090 1.4e-09 65.9 43 72.1
PGR042G2516 Punica granatum HOM05D007964 ORTHO05D010090 1.4e-09 65.9 45 71.1
CsaV3_6G004920 Cucumis sativus L. HOM05D007964 ORTHO05D010090 2.4e-09 65.1 50 62.0
THA.LOC104810508 Tarenaya hassleriana HOM05D007964 ORTHO05D010090 2.4e-09 65.1 46 58.7
Zm00001eb205370 Zea mays HOM05D007964 ORTHO05D010090 3.1e-09 64.7 55 58.2
RcHm_v2.0_Chr6g0273981 Rosa chinensis HOM05D007964 ORTHO05D010090 5.3e-09 63.9 67 52.2
Os02g0210900 Oryza sativa ssp. japonica HOM05D007964 ORTHO05D010090 1.2e-08 62.8 59 61.0
Sed0009872 Sechium edule HOM05D007964 ORTHO05D010090 2.0e-08 62.0 50 52.0
HPP92_000633 Vanilla planifolia HOM05D007964 ORTHO05D010090 3.8e-07 57.8 38 63.2
ATR1120G014 Amborella trichopoda HOM05D007964 ORTHO05D010090 1.1e-06 56.2 37 64.9
PSO135G0167 Papaver somniferum HOM05D002803 ORTHO05D003089 3.2e-06 54.7 69 42.0
Gorai.008G058300 Gossypium raimondii HOM05D008294 ORTHO05D010468 4.2e-06 54.3 49 53.1
Lalb_Chr07g0178561 Lupinus albus HOM05D002803 ORTHO05D003089 5.5e-06 53.9 41 61.0
PGR102G2995 Punica granatum HOM05D002803 ORTHO05D003089 5.5e-06 53.9 35 65.7
TAR374G0994 Trochodendron aralioides HOM05D002803 ORTHO05D003089 9.3e-06 53.1 34 64.7


User provided reference genes

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