Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037938 Camellia sinensis var. sinensis HOM05D006404 ORTHO05D008170 0.0e+00 1974.9 951 100.0
Rhsim13G0217700 Rhododendron simsii HOM05D006404 ORTHO05D008170 0.0e+00 1448.3 996 72.0
QL01p004100 Quercus lobata HOM05D006404 ORTHO05D008170 0.0e+00 1375.9 949 69.8
Actinidia06923 Actinidia chinensis HOM05D006404 ORTHO05D008170 0.0e+00 1369.8 842 77.8
TAR633G0603 Trochodendron aralioides HOM05D006404 ORTHO05D008170 0.0e+00 1368.6 945 69.6
Potri.001G255700 Populus trichocarpa HOM05D006404 ORTHO05D008170 0.0e+00 1356.7 956 66.5
GSVIVG01031534001 Vitis vinifera HOM05D006404 ORTHO05D008170 0.0e+00 1353.6 930 69.2
Potri.009G051100 Populus trichocarpa HOM05D006404 ORTHO05D008170 0.0e+00 1349.0 951 67.1
Cfa009810 Carpinus fangiana HOM05D006404 ORTHO05D008170 0.0e+00 1346.3 934 68.1
Ciclev10014162m.g Citrus clementina HOM05D006404 ORTHO05D008170 0.0e+00 1342.4 955 66.9
MD03G1172000 Malus domestica HOM05D006404 ORTHO05D008170 0.0e+00 1320.4 957 66.0
FvH4_3g28450 Fragaria vesca HOM05D006404 ORTHO05D008170 0.0e+00 1318.9 958 65.9
Thecc.09G239000 Theobroma cacao HOM05D006404 ORTHO05D008170 0.0e+00 1317.4 955 66.7
FAN11G2181 Fragaria x ananassa HOM05D006404 ORTHO05D008170 0.0e+00 1316.6 958 65.7
RcHm_v2.0_Chr5g0053011 Rosa chinensis HOM05D006404 ORTHO05D008170 0.0e+00 1314.3 957 66.0
FAN16G0405 Fragaria x ananassa HOM05D006404 ORTHO05D008170 0.0e+00 1308.5 958 65.4
FAN21G1559 Fragaria x ananassa HOM05D006404 ORTHO05D008170 0.0e+00 1294.3 980 64.2
Cc01_g05020 Coffea canephora HOM05D006404 ORTHO05D008170 0.0e+00 1285.4 956 65.5
Manes.06G162300 Manihot esculenta HOM05D006404 ORTHO05D008170 0.0e+00 1285.4 955 64.4
Actinidia16347 Actinidia chinensis HOM05D006404 ORTHO05D008170 0.0e+00 1283.5 794 76.7
TWI32G0006 Tripterygium wilfordii HOM05D006404 ORTHO05D008170 0.0e+00 1277.3 945 65.4
Sabra09G0037200 Salix brachista HOM05D006404 ORTHO05D008170 0.0e+00 1273.5 920 66.2
Gorai.009G074000 Gossypium raimondii HOM05D006404 ORTHO05D008170 0.0e+00 1266.5 952 63.7
Nn7g36358 Nelumbo nucifera HOM05D006404 ORTHO05D008170 0.0e+00 1255.4 941 63.7
Haze_23174 Corylus avellana HOM05D006404 ORTHO05D008170 0.0e+00 1243.4 935 64.7
Nn2g15163 Nelumbo nucifera HOM05D006404 ORTHO05D008170 0.0e+00 1243.0 929 63.5
Gohir.D09G109000 Gossypium hirsutum HOM05D006404 ORTHO05D008170 0.0e+00 1241.5 941 64.0
Gorai.006G126600 Gossypium raimondii HOM05D006404 ORTHO05D008170 0.0e+00 1241.5 941 63.9
Sabra16G0156500 Salix brachista HOM05D006404 ORTHO05D008170 0.0e+00 1237.6 921 64.5
COL.COLO4_36457 Corchorus olitorius HOM05D006404 ORTHO05D008170 0.0e+00 1236.9 839 68.9
vmacro04128 Vaccinium macrocarpon HOM05D006404 ORTHO05D008170 0.0e+00 1233.8 935 66.8
Oeu061307.1 Olea europaea HOM05D006404 ORTHO05D008170 0.0e+00 1228.0 871 66.7
MSTRG.12459 Avicennia marina HOM05D006404 ORTHO05D008170 0.0e+00 1226.5 950 61.3
Duzib150G0746 Durio zibethinus HOM05D006404 ORTHO05D008170 0.0e+00 1225.3 955 63.2
PGR102G1713 Punica granatum HOM05D006404 ORTHO05D008170 0.0e+00 1206.0 952 61.7
Eucgr.B03709 Eucalyptus grandis HOM05D006404 ORTHO05D008170 0.0e+00 1198.3 930 61.2
Prupe.4G254900 Prunus persica HOM05D006404 ORTHO05D008170 0.0e+00 1197.2 818 68.3
CANSAT54G0859 Cannabis sativa HOM05D006404 ORTHO05D008170 0.0e+00 1194.5 886 64.4
Nitab4.5_0007711g0010 Nicotiana tabacum HOM05D006404 ORTHO05D008170 0.0e+00 1186.0 957 60.7
CAN.G494.3 Capsicum annuum HOM05D006404 ORTHO05D008170 0.0e+00 1182.5 951 60.9
ClCG03G013070 Citrullus lanatus HOM05D006404 ORTHO05D008170 0.0e+00 1181.4 947 60.4
Solyc11g065340.2 Solanum lycopersicum HOM05D006404 ORTHO05D008170 0.0e+00 1181.4 950 60.9
CsaV3_1G042990 Cucumis sativus L. HOM05D006404 ORTHO05D008170 0.0e+00 1173.3 945 59.7
MELO3C015171.2 Cucumis melo HOM05D006404 ORTHO05D008170 0.0e+00 1172.5 945 60.0
Hund07470 Selenicereus undatus HOM05D006404 ORTHO05D008170 0.0e+00 1152.1 914 61.1
Sopen11g025080 Solanum pennellii HOM05D006404 ORTHO05D008170 0.0e+00 1146.7 948 60.0
Migut.N02343 Erythranthe guttata HOM05D006404 ORTHO05D008170 0.0e+00 1145.2 953 59.1
Aqoxy2G00213 Aquilegia oxysepala HOM05D006404 ORTHO05D008170 0.0e+00 1144.4 949 58.4
Glyma.12G020900 Glycine max HOM05D006404 ORTHO05D008170 0.0e+00 1142.1 957 59.4
Sed0002434 Sechium edule HOM05D006404 ORTHO05D008170 0.0e+00 1140.2 947 58.7
Glyma.01G227500 Glycine max HOM05D006404 ORTHO05D008170 0.0e+00 1139.8 955 58.7
Lj3g0019929 Lotus japonicus HOM05D006404 ORTHO05D008170 0.0e+00 1131.3 959 58.7
Peaxi162Scf00004g03311 Petunia axillaris HOM05D006404 ORTHO05D008170 0.0e+00 1130.9 949 58.5
VMungo1127G0106 Vigna mungo HOM05D006404 ORTHO05D008170 0.0e+00 1125.2 957 58.1
THA.LOC104811179 Tarenaya hassleriana HOM05D006404 ORTHO05D008170 0.0e+00 1124.4 948 58.4
Nitab4.5_0006123g0010 Nicotiana tabacum HOM05D006404 ORTHO05D008170 0.0e+00 1124.0 923 60.0
Sc16g0011280 Simmondsia chinensis HOM05D006404 ORTHO05D008170 0.0e+00 1117.8 920 58.9
VMungo1215G1207 Vigna mungo HOM05D006404 ORTHO05D008170 0.0e+00 1113.2 929 59.1
AUR62000151 Chenopodium quinoa HOM05D006404 ORTHO05D008170 0.0e+00 1112.8 941 58.7
DCAR_029968 Daucus carota HOM05D006404 ORTHO05D008170 0.0e+00 1111.3 917 59.1
AUR62039864 Chenopodium quinoa HOM05D006404 ORTHO05D008170 0.0e+00 1097.8 939 58.3
PGSC0003DMG400029994 Solanum tuberosum HOM05D006404 ORTHO05D008170 0.0e+00 1094.0 883 60.9
Medtr4g076810 Medicago truncatula HOM05D006404 ORTHO05D008170 0.0e+00 1092.8 955 56.9
CiPaw.13G154900 Carya illinoinensis HOM05D006404 ORTHO05D008170 0.0e+00 1083.6 753 68.5
Psat7g172680 Pisum sativum HOM05D006404 ORTHO05D008170 0.0e+00 1081.2 956 55.8
TPR.G13759 Trifolium pratense HOM05D006404 ORTHO05D008170 0.0e+00 1081.2 959 56.4
Zm00001eb332810 Zea mays HOM05D006404 ORTHO05D008170 0.0e+00 1078.9 956 54.6
Lalb_Chr03g0024521 Lupinus albus HOM05D006404 ORTHO05D008170 0.0e+00 1076.6 959 56.4
Atru.chr3.2649 Acer truncatum HOM05D006404 ORTHO05D008170 0.0e+00 1075.5 714 69.9
HanXRQChr13g0401241 Helianthus annuus HOM05D006404 ORTHO05D008170 5.1e-307 1057.7 911 55.9
Lj2A624G32 Lonicera japonica HOM05D006404 ORTHO05D008170 1.1e-301 1040.0 955 55.9
SGA_v2.0_scaffold3G01478 Striga asiatica HOM05D006404 ORTHO05D008170 1.1e-298 1030.0 961 53.6
Ca_26059_v3 Cicer arietinum L. HOM05D006404 ORTHO05D008170 8.1e-297 1023.8 822 59.2
Ca_30127_v3 Cicer arietinum L. HOM05D006404 ORTHO05D008170 8.1e-297 1023.8 822 59.2
arahy.Tifrunner.gnm1.ann1.E0EAPG Arachis hypogaea HOM05D006404 ORTHO05D008170 1.4e-296 1023.1 957 53.6
CSS0019486 Camellia sinensis var. sinensis HOM05D006404 ORTHO05D008170 1.4e-296 1023.1 484 99.4
ECA233G0536 Erigeron canadensis HOM05D006404 ORTHO05D008170 5.3e-296 1021.1 814 60.9
arahy.Tifrunner.gnm1.ann1.BK260Y Arachis hypogaea HOM05D006404 ORTHO05D008170 1.5e-295 1019.6 957 53.5
Ah.06g193910 Amaranthus hybridus HOM05D006404 ORTHO05D008170 1.8e-291 1006.1 914 54.5
Lsat_1_v5_gn_6_25840 Lactuca sativa HOM05D006404 ORTHO05D008170 1.9e-290 1002.7 920 55.4
MBI19_g45588_MAGBIO Magnolia biondii HOM05D006404 ORTHO05D008170 8.2e-289 997.3 831 58.1
ATR0307G124 Amborella trichopoda HOM05D006404 ORTHO05D008170 8.5e-286 987.3 975 51.8
Gohir.A05G070000 Gossypium hirsutum HOM05D006404 ORTHO05D008170 1.4e-285 986.5 748 62.4
Glyma.11G094500 Glycine max HOM05D006404 ORTHO05D008170 2.1e-276 956.1 728 62.1
Duzib168G1842 Durio zibethinus HOM05D006404 ORTHO05D008170 1.0e-275 953.7 637 69.7
EL10Ac4g10212 Beta vulgaris HOM05D006404 ORTHO05D008170 2.0e-274 949.5 931 52.5
SEGI_17812 Sequoiadendron giganteum HOM05D006404 ORTHO05D008170 6.3e-273 944.5 960 48.9
Cpa.g.sc84.27 Carica papaya HOM05D006404 ORTHO05D008170 1.2e-263 913.7 817 55.2
Gohir.A09G112300 Gossypium hirsutum HOM05D006404 ORTHO05D008170 1.0e-251 874.0 623 65.8
Manes.14G004336 Manihot esculenta HOM05D006404 ORTHO05D008170 6.3e-241 838.2 954 48.8
Phvul.002G034601 Phaseolus vulgaris HOM05D006404 ORTHO05D008170 2.3e-206 723.4 649 54.1
Os01g0275900 Oryza sativa ssp. japonica HOM05D006404 ORTHO05D008170 4.3e-205 719.2 579 58.7
Mapoly0128s0014 Marchantia polymorpha HOM05D006404 ORTHO05D008170 5.4e-200 702.2 1015 39.0
Gohir.D05G073000 Gossypium hirsutum HOM05D006404 ORTHO05D008170 6.0e-175 619.0 440 65.5
Phvul.011G076700 Phaseolus vulgaris HOM05D006404 ORTHO05D008170 1.0e-174 618.2 581 55.4
Gohir.D05G072932 Gossypium hirsutum HOM05D006404 ORTHO05D008170 5.7e-165 585.9 478 60.5
unitig_27.g25000 Utricularia gibba HOM05D006404 ORTHO05D008170 9.7e-165 585.1 521 55.7
HPP92_028181 Vanilla planifolia HOM05D006404 ORTHO05D008170 7.2e-160 568.9 549 51.7
FAN25G0856 Fragaria x ananassa HOM05D006404 ORTHO05D008170 7.7e-138 495.7 418 60.8
CBR_g12234 Chara braunii HOM05D006404 ORTHO05D008170 2.6e-133 480.7 1023 32.6
Glyma.11G015367 Glycine max HOM05D006404 ORTHO05D008170 3.6e-127 460.3 377 58.9
HPP92_028182 Vanilla planifolia HOM05D006404 ORTHO05D008170 7.5e-109 399.4 303 59.4
Gohir.A09G112350 Gossypium hirsutum HOM05D006404 ORTHO05D008170 1.2e-87 328.9 295 59.0
TAR633G2510 Trochodendron aralioides HOM05D006404 ORTHO05D008170 8.1e-79 299.7 281 57.3
PGSC0003DMG400035426 Solanum tuberosum HOM05D006404 ORTHO05D008170 1.2e-74 285.8 207 65.7
Duzib168G1560 Durio zibethinus HOM05D006404 ORTHO05D008170 2.7e-74 284.6 262 58.4
Os01g0275950 Oryza sativa ssp. japonica HOM05D006404 ORTHO05D008170 3.8e-68 264.2 289 44.3
unitig_27.g24999 Utricularia gibba HOM05D006404 ORTHO05D008170 9.6e-64 249.6 291 43.6
MBI19_g48146_MAGBIO Magnolia biondii HOM05D006404 ORTHO05D008170 1.7e-52 212.2 283 45.2
PRCOL_00003209 Prasinoderma coloniale HOM05D006404 ORTHO05D008170 7.7e-37 160.2 798 23.2
Atru.chr3.2650 Acer truncatum HOM05D006404 ORTHO05D008170 9.4e-35 153.3 104 70.2
PGSC0003DMG400025695 Solanum tuberosum HOM05D006404 ORTHO05D008170 9.4e-35 153.3 106 67.0
Lsat_1_v5_gn_8_47480 Lactuca sativa HOM05D006404 ORTHO05D008170 3.6e-34 151.4 158 51.9
Lsat_1_v5_gn_5_69941 Lactuca sativa HOM05D006404 ORTHO05D008170 4.7e-34 151.0 158 53.2
Lsat_1_v5_gn_4_119980 Lactuca sativa HOM05D006404 ORTHO05D008170 8.0e-34 150.2 134 56.0
HPP92_012439 Vanilla planifolia HOM05D006404 ORTHO05D008170 3.6e-26 124.8 222 35.1
MELO3C030880.2 Cucumis melo HOM05D006404 ORTHO05D008170 2.1e-18 99.0 86 55.8
Atru.chr3.2651 Acer truncatum HOM05D006404 ORTHO05D008170 4.7e-18 97.8 116 48.3
Thecc.01G390500 Theobroma cacao HOM05D006404 ORTHO05D008170 6.8e-17 94.0 95 48.4
TAR623G1438 Trochodendron aralioides HOM05D006201 ORTHO05D007178 2.4e-14 85.5 88 55.7
MELO3C034469.2 Cucumis melo HOM05D006404 ORTHO05D003726 9.1e-14 83.6 62 58.1
MELO3C034790.2 Cucumis melo HOM05D006404 ORTHO05D008170 2.7e-13 82.0 50 68.0
COL.COLO4_24475 Corchorus olitorius HOM05D003120 ORTHO05D003568 1.0e-12 80.1 277 24.9
MELO3C028471.2 Cucumis melo HOM05D006404 ORTHO05D008170 3.6e-10 71.6 52 59.6


User provided reference genes

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