Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037937 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 7.5e-302 1039.6 500 100.0
CSS0040194 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 3.0e-298 1027.7 500 98.8
CSS0035496 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 2.5e-297 1024.6 500 98.2
CSS0040116 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 3.3e-297 1024.2 500 98.2
CSS0031015 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 2.8e-296 1021.1 500 97.8
CSS0046160 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 9.9e-294 1012.7 500 97.4
CSS0037157 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.7e-293 1011.9 500 97.4
CSS0002387 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 4.1e-292 1007.3 500 97.0
CSS0014623 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 4.1e-292 1007.3 500 96.8
CSS0035234 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 7.1e-292 1006.5 500 97.0
CSS0019796 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 3.5e-291 1004.2 500 96.6
CSS0028923 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 6.0e-291 1003.4 500 96.6
CSS0005765 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 5.1e-290 1000.3 500 95.8
Prupe.4G266300 Prunus persica HOM05D007060 ORTHO05D009087 3.3e-212 741.9 500 70.8
TAR623G0941 Trochodendron aralioides HOM05D007060 ORTHO05D009087 6.8e-210 734.2 509 69.5
CiPaw.13G043400 Carya illinoinensis HOM05D007060 ORTHO05D009087 1.0e-205 720.3 502 68.5
Cfa010526 Carpinus fangiana HOM05D007060 ORTHO05D009087 6.6e-205 717.6 499 69.5
Manes.07G085000 Manihot esculenta HOM05D007060 ORTHO05D009087 3.4e-201 705.3 493 69.0
CANSAT56G2168 Cannabis sativa HOM05D007060 ORTHO05D009087 7.5e-201 704.1 498 68.1
Duzib106G1772 Durio zibethinus HOM05D007060 ORTHO05D009087 3.7e-200 701.8 479 69.5
Potri.008G018200 Populus trichocarpa HOM05D007060 ORTHO05D009087 4.9e-200 701.4 500 68.0
Gorai.N007800 Gossypium raimondii HOM05D007060 ORTHO05D009087 7.0e-199 697.6 475 70.1
Cc02_g09400 Coffea canephora HOM05D007060 ORTHO05D009087 4.6e-198 694.9 504 68.3
MD03G1165900 Malus domestica HOM05D007060 ORTHO05D009087 3.6e-195 685.3 498 65.3
Thecc.10G116400 Theobroma cacao HOM05D007060 ORTHO05D009087 2.3e-194 682.6 470 68.3
TWI63G0697 Tripterygium wilfordii HOM05D007060 ORTHO05D009087 6.8e-194 681.0 500 66.4
RcHm_v2.0_Chr1g0331951 Rosa chinensis HOM05D007060 ORTHO05D009087 8.9e-194 680.6 499 66.1
Nn6g34700 Nelumbo nucifera HOM05D007060 ORTHO05D009087 2.0e-193 679.5 497 65.6
Solyc11g006560.3 Solanum lycopersicum HOM05D007060 ORTHO05D009087 5.1e-189 664.8 503 65.2
Glyma.10G195800 Glycine max HOM05D007060 ORTHO05D009087 6.6e-189 664.5 497 65.0
Lj5g0018387 Lotus japonicus HOM05D007060 ORTHO05D009087 1.1e-188 663.7 496 64.5
QL04p047886 Quercus lobata HOM05D007060 ORTHO05D009087 3.3e-188 662.1 402 76.6
PGSC0003DMG400001998 Solanum tuberosum HOM05D007060 ORTHO05D009087 1.6e-187 659.8 509 64.4
Lj3P923T49 Lonicera japonica HOM05D007060 ORTHO05D009087 4.4e-185 651.7 404 75.2
Aqoxy1G00669 Aquilegia oxysepala HOM05D007060 ORTHO05D009087 1.7e-184 649.8 502 63.3
ClCG05G021920 Citrullus lanatus HOM05D007060 ORTHO05D009087 2.2e-184 649.4 502 62.0
Dinv08415 Davidia involucrata HOM05D007060 ORTHO05D009087 2.4e-183 646.0 360 80.8
Thhalv10020598m.g Eutrema salsugineum HOM05D007060 ORTHO05D009087 4.1e-183 645.2 485 65.8
Rhsim03G0096200 Rhododendron simsii HOM05D007060 ORTHO05D009087 1.6e-182 643.3 404 76.2
Atru.chr12.1066 Acer truncatum HOM05D007060 ORTHO05D009087 2.1e-182 642.9 400 74.0
Medtr1g090540 Medicago truncatula HOM05D007060 ORTHO05D009087 2.7e-182 642.5 500 63.0
TPR.G37861 Trifolium pratense HOM05D007060 ORTHO05D009087 2.7e-182 642.5 499 62.7
Hma1.2p1_0457F.1_g156870 Hydrangea macrophylla HOM05D007060 ORTHO05D009087 3.5e-182 642.1 400 75.0
AL3G22100 Arabidopsis lyrata HOM05D007060 ORTHO05D009087 6.0e-182 641.3 488 64.1
Psat6g172000 Pisum sativum HOM05D007060 ORTHO05D009087 6.0e-182 641.3 499 63.7
Sabra08G0011800 Salix brachista HOM05D007060 ORTHO05D009087 7.8e-182 641.0 400 74.0
MSTRG.9036 Avicennia marina HOM05D007060 ORTHO05D009087 1.3e-181 640.2 502 62.7
Carub.0003s0986 Capsella rubella HOM05D007060 ORTHO05D009087 1.7e-181 639.8 480 65.2
AT3G10630 Arabidopsis thaliana HOM05D007060 ORTHO05D009087 2.3e-181 639.4 488 63.7
Sp3g08940 Schrenkiella parvula HOM05D007060 ORTHO05D009087 3.9e-181 638.6 487 64.3
Oeu033276.1 Olea europaea HOM05D007060 ORTHO05D009087 6.6e-181 637.9 411 72.0
GSVIVG01034635001 Vitis vinifera HOM05D007060 ORTHO05D009087 1.1e-180 637.1 398 74.9
VMungo0720G1293 Vigna mungo HOM05D007060 ORTHO05D009087 1.5e-180 636.7 502 63.5
Sopen11g002500 Solanum pennellii HOM05D007060 ORTHO05D009087 4.3e-180 635.2 425 70.4
MELO3C012336.2 Cucumis melo HOM05D007060 ORTHO05D009087 6.2e-179 631.3 501 61.9
CsaV3_5G035220 Cucumis sativus L. HOM05D007060 ORTHO05D009087 8.1e-179 630.9 501 61.7
THA.LOC104816472 Tarenaya hassleriana HOM05D007060 ORTHO05D009087 8.9e-178 627.5 501 62.9
PGR142G1122 Punica granatum HOM05D007060 ORTHO05D009087 1.2e-177 627.1 506 61.1
Ciclev10015484m.g Citrus clementina HOM05D007060 ORTHO05D009087 1.5e-177 626.7 400 73.2
CARHR085210 Cardamine hirsuta HOM05D007060 ORTHO05D009087 4.4e-177 625.2 479 64.3
COL.COLO4_07825 Corchorus olitorius HOM05D007060 ORTHO05D009087 1.7e-176 623.2 405 70.1
Migut.F00850 Erythranthe guttata HOM05D007060 ORTHO05D009087 2.2e-176 622.9 472 62.5
Gohir.D06G177400 Gossypium hirsutum HOM05D007060 ORTHO05D009087 1.1e-175 620.5 378 73.8
HanXRQChr02g0053541 Helianthus annuus HOM05D007060 ORTHO05D009087 1.2e-174 617.1 472 63.3
Sed0007060 Sechium edule HOM05D007060 ORTHO05D009087 2.7e-174 615.9 495 59.4
A01p41570 Brassica napus HOM05D007060 ORTHO05D009087 6.0e-174 614.8 487 62.6
Cpa.g.sc54.25 Carica papaya HOM05D007060 ORTHO05D009087 6.0e-174 614.8 400 70.2
BolC1t05373H Brassica oleracea HOM05D007060 ORTHO05D009087 1.3e-173 613.6 486 62.3
Actinidia03837 Actinidia chinensis HOM05D007060 ORTHO05D009087 2.5e-172 609.4 350 82.3
CAN.G143.24 Capsicum annuum HOM05D007060 ORTHO05D009087 2.5e-172 609.4 400 71.2
BraA01t04232Z Brassica rapa HOM05D007060 ORTHO05D009087 2.1e-171 606.3 487 62.0
Lsat_1_v5_gn_2_105821 Lactuca sativa HOM05D007060 ORTHO05D009087 6.2e-171 604.7 402 69.9
Nitab4.5_0001781g0140 Nicotiana tabacum HOM05D007060 ORTHO05D009087 6.2e-171 604.7 401 70.8
Phvul.007G138500 Phaseolus vulgaris HOM05D007060 ORTHO05D009087 1.8e-170 603.2 400 70.0
Ca_10429_v3 Cicer arietinum L. HOM05D007060 ORTHO05D009087 5.3e-170 601.7 393 71.8
Peaxi162Scf00725g00056 Petunia axillaris HOM05D007060 ORTHO05D010136 9.0e-170 600.9 396 71.5
PGR142G0278 Punica granatum HOM05D007060 ORTHO05D009087 2.0e-169 599.7 503 59.0
Nitab4.5_0007799g0060 Nicotiana tabacum HOM05D007060 ORTHO05D009087 4.4e-169 598.6 502 60.2
ECA238G3502 Erigeron canadensis HOM05D007060 ORTHO05D009087 1.6e-166 590.1 403 67.7
DCAR_005120 Daucus carota HOM05D007060 ORTHO05D009087 3.5e-166 589.0 370 73.2
unitig_46.g18644 Utricularia gibba HOM05D007060 ORTHO05D009087 7.6e-161 571.2 502 56.8
Sopen11g002460 Solanum pennellii HOM05D007060 ORTHO05D009087 2.7e-158 562.8 372 70.2
Sopen11g002480 Solanum pennellii HOM05D007060 ORTHO05D009087 2.7e-158 562.8 359 72.4
SalBow1G5690 Salvia bowleyana HOM05D007060 ORTHO05D009087 5.1e-157 558.5 418 63.9
Os09g0296700 Oryza sativa ssp. japonica HOM05D007060 ORTHO05D009087 1.5e-156 557.0 420 62.1
SEGI_33772 Sequoiadendron giganteum HOM05D007060 ORTHO05D009087 5.6e-156 555.1 478 57.7
CDE06G1445 Ceratophyllum demersum HOM05D007060 ORTHO05D009087 2.8e-155 552.7 391 65.7
ATR0772G206 Amborella trichopoda HOM05D007060 ORTHO05D009087 4.5e-153 545.4 508 54.1
Eucgr.G02680 Eucalyptus grandis HOM05D007060 ORTHO05D009087 3.5e-150 535.8 350 69.7
BcaB04g21186 Brassica carinata HOM05D007060 ORTHO05D009087 1.8e-149 533.5 478 58.4
Zm00001eb309100 Zea mays HOM05D007060 ORTHO05D009087 6.7e-149 531.6 415 61.2
SMO203G0203 Selaginella moellendorffii HOM05D007060 ORTHO05D009087 3.1e-130 469.5 391 57.3
AagrBONN_evm.TU.Sc2ySwM_344.3615 Anthoceros agrestis HOM05D007060 ORTHO05D009087 9.1e-130 468.0 386 58.8
Lalb_Chr21g0312821 Lupinus albus HOM05D007060 ORTHO05D009087 5.1e-125 452.2 293 73.0
Glyma.20G194300 Glycine max HOM05D007060 ORTHO05D009087 6.5e-120 435.3 477 50.1
SHI22512 Sapria himalayana HOM05D007060 ORTHO05D009087 5.2e-117 425.6 353 59.2
Pp3c6_17860 Physcomitrium patens HOM05D007060 ORTHO05D009087 4.7e-110 402.5 407 49.6
CBR_g29369 Chara braunii HOM05D007060 ORTHO05D009087 1.2e-94 351.3 296 56.8
Hma1.2p1_0826F.1_g224930 Hydrangea macrophylla HOM05D007060 ORTHO05D009087 4.1e-90 336.3 209 74.6
MCO11G427 Micromonas commoda HOM05D007060 ORTHO05D009087 1.8e-85 320.9 433 39.7
Cre02.g118801 Chlamydomonas reinhardtii HOM05D007060 ORTHO05D009087 4.1e-82 309.7 432 39.8
PRCOL_00001658 Prasinoderma coloniale HOM05D007060 ORTHO05D009087 5.6e-71 272.7 447 36.7
TAR625G0310 Trochodendron aralioides HOM05D007060 ORTHO05D009087 3.7e-67 260.0 302 46.0
FAN24G3568 Fragaria x ananassa HOM05D007060 ORTHO05D009087 7.3e-63 245.7 399 38.1
FvH4_5g28400 Fragaria vesca HOM05D007060 ORTHO05D009087 4.0e-61 240.0 162 69.1
HPP92_006362 Vanilla planifolia HOM05D007060 ORTHO05D009087 2.0e-44 184.5 217 47.9
Cre09.g386732 Chlamydomonas reinhardtii HOM05D007060 ORTHO05D009087 2.3e-40 171.0 322 30.7
PRCOL_00006151 Prasinoderma coloniale HOM05D007060 ORTHO05D048979 5.3e-29 133.3 308 32.8
FAN03G2415 Fragaria x ananassa HOM05D007060 ORTHO05D009087 1.2e-28 132.1 100 66.0
MCO05G161 Micromonas commoda HOM05D007060 ORTHO05D048979 1.5e-23 115.2 299 28.8
MBI01_g04536_MAGBIO Magnolia biondii HOM05D007060 ORTHO05D009087 4.2e-18 97.1 73 64.4
AL1G24060 Arabidopsis lyrata HOM05D007060 ORTHO05D023607 6.7e-16 89.7 59 64.4
CBR_g29367 Chara braunii HOM05D007060 ORTHO05D009087 9.4e-10 69.3 86 40.7


User provided reference genes

Program Settings