Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037918 Camellia sinensis var. sinensis HOM05D025271 ORTHO05D000285 9.2e-209 729.9 360 100.0
CSS0038245 Camellia sinensis var. sinensis HOM05D025271 ORTHO05D000285 9.9e-187 656.8 378 87.8
CSS0049064 Camellia sinensis var. sinensis HOM05D025271 ORTHO05D000285 7.8e-91 338.2 327 59.9
CSS0020821 Camellia sinensis var. sinensis HOM05D025271 ORTHO05D000285 1.3e-85 320.9 301 58.5
CSS0002535 Camellia sinensis var. sinensis HOM05D025271 ORTHO05D000285 8.1e-80 301.6 316 54.1
CSS0012224 Camellia sinensis var. sinensis HOM05D000876 ORTHO05D000285 1.0e-50 204.9 392 37.0
CSS0049565 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000037 4.8e-48 196.1 315 43.2
CSS0003904 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000037 6.3e-48 195.7 343 38.8
CSS0047854 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000037 3.1e-47 193.4 276 43.5
CSS0015688 Camellia sinensis var. sinensis HOM05D000876 ORTHO05D000285 4.1e-47 193.0 377 37.1
CSS0013810 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000037 1.0e-45 188.3 301 41.2
CSS0038692 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000037 1.4e-44 184.5 314 40.1
CSS0016021 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000037 1.2e-38 164.9 303 40.9
CSS0044588 Camellia sinensis var. sinensis HOM05D001357 ORTHO05D001224 7.0e-23 112.5 198 39.4
CSS0014704 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000037 2.0e-22 110.9 104 51.9
CSS0024057 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000037 2.0e-22 110.9 104 51.9
CSS0015075 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000037 1.7e-21 107.8 104 51.0
CSS0039848 Camellia sinensis var. sinensis HOM05D001357 ORTHO05D001224 1.7e-21 107.8 209 36.8
CSS0018277 Camellia sinensis var. sinensis HOM05D010762 ORTHO05D000285 1.8e-18 97.8 105 43.8
CSS0028966 Camellia sinensis var. sinensis HOM05D010762 ORTHO05D000285 1.1e-17 95.1 105 42.9
CSS0013298 Camellia sinensis var. sinensis HOM05D010762 ORTHO05D000285 2.0e-17 94.4 105 41.9
CSS0036694 Camellia sinensis var. sinensis HOM05D010762 ORTHO05D000285 2.6e-17 94.0 105 41.9
CSS0014901 Camellia sinensis var. sinensis HOM05D010762 ORTHO05D000285 5.7e-17 92.8 114 42.1
CSS0029673 Camellia sinensis var. sinensis HOM05D010762 ORTHO05D000285 5.7e-17 92.8 105 41.9
CSS0005143 Camellia sinensis var. sinensis HOM05D010762 ORTHO05D000285 7.5e-17 92.4 105 43.8
CSS0031319 Camellia sinensis var. sinensis HOM05D010762 ORTHO05D000285 9.7e-17 92.0 105 41.9
Actinidia04386 Actinidia chinensis HOM05D000876 ORTHO05D000285 1.7e-16 91.3 102 40.2
Actinidia07377 Actinidia chinensis HOM05D000876 ORTHO05D000285 1.7e-16 91.3 102 40.2
Actinidia15148 Actinidia chinensis HOM05D000876 ORTHO05D000285 1.7e-16 91.3 102 40.2
CSS0027195 Camellia sinensis var. sinensis HOM05D010762 ORTHO05D000285 1.7e-16 91.3 105 41.9
CSS0039704 Camellia sinensis var. sinensis HOM05D010762 ORTHO05D000285 2.8e-16 90.5 105 41.0
Actinidia36308 Actinidia chinensis HOM05D000876 ORTHO05D000285 8.2e-16 89.0 119 37.8
CSS0044094 Camellia sinensis var. sinensis HOM05D010762 ORTHO05D000285 5.3e-15 86.3 112 38.4
CSS0041660 Camellia sinensis var. sinensis HOM05D010762 ORTHO05D000285 1.2e-14 85.1 105 38.1
CSS0005680 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000037 2.2e-13 80.9 104 41.3
CSS0021579 Camellia sinensis var. sinensis HOM05D000876 ORTHO05D000285 1.9e-12 77.8 99 37.4
Atru.chr2.2393 Acer truncatum HOM05D000034 ORTHO05D000037 2.5e-12 77.4 100 39.0
Medtr3g110155 Medicago truncatula HOM05D000876 ORTHO05D000285 2.5e-12 77.4 101 38.6
Medtr8g006585 Medicago truncatula HOM05D000876 ORTHO05D000285 2.5e-12 77.4 101 38.6
Medtr8g006695 Medicago truncatula HOM05D000876 ORTHO05D000285 2.5e-12 77.4 101 38.6
CSS0033511 Camellia sinensis var. sinensis HOM05D000876 ORTHO05D000285 3.2e-12 77.0 99 36.4
MD12G1140100 Malus domestica HOM05D002354 ORTHO05D002469 3.2e-12 77.0 101 41.6
Rhsim05G0157800 Rhododendron simsii HOM05D000876 ORTHO05D000285 3.2e-12 77.0 103 37.9
Rhsim06G0093500 Rhododendron simsii HOM05D000876 ORTHO05D000285 3.2e-12 77.0 103 37.9
Medtr2g435870 Medicago truncatula HOM05D000876 ORTHO05D000285 4.2e-12 76.6 96 40.6
Rhsim06G0024000 Rhododendron simsii HOM05D000876 ORTHO05D000285 4.2e-12 76.6 103 37.9
Rhsim10G0146900 Rhododendron simsii HOM05D000876 ORTHO05D000285 4.2e-12 76.6 103 37.9
Atru.chr11.998 Acer truncatum HOM05D000876 ORTHO05D000285 5.5e-12 76.3 100 37.0
Atru.chr12.1553 Acer truncatum HOM05D000876 ORTHO05D000285 5.5e-12 76.3 100 37.0
AUR62009858 Chenopodium quinoa HOM05D000034 ORTHO05D000037 7.2e-12 75.9 99 35.4
AUR62033764 Chenopodium quinoa HOM05D000876 ORTHO05D000285 7.2e-12 75.9 106 36.8
CANSAT78G1247 Cannabis sativa HOM05D000876 ORTHO05D000285 9.4e-12 75.5 108 34.3
TWI38G1581 Tripterygium wilfordii HOM05D000876 ORTHO05D000285 9.4e-12 75.5 103 37.9
CANSAT01G0041 Cannabis sativa HOM05D000876 ORTHO05D000285 1.2e-11 75.1 108 34.3
Glyma.04G129400 Glycine max HOM05D000876 ORTHO05D000285 1.6e-11 74.7 100 40.0
Rhsim01G0089100 Rhododendron simsii HOM05D000034 ORTHO05D000285 2.1e-11 74.3 102 37.3
Rhsim03G0048400 Rhododendron simsii HOM05D000034 ORTHO05D000037 2.1e-11 74.3 102 37.3
Rhsim09G0055100 Rhododendron simsii HOM05D000034 ORTHO05D000037 2.1e-11 74.3 102 38.2
Glyma.15G226650 Glycine max HOM05D000876 ORTHO05D000285 2.7e-11 73.9 100 40.0
Rhsim02G0037900 Rhododendron simsii HOM05D000034 ORTHO05D000285 2.7e-11 73.9 102 38.2
Gorai.004G036600 Gossypium raimondii HOM05D000876 ORTHO05D000285 3.6e-11 73.6 108 39.8
Glyma.18G094800 Glycine max HOM05D000876 ORTHO05D000285 4.7e-11 73.2 100 39.0
QL04p079613 Quercus lobata HOM05D000876 ORTHO05D000285 4.7e-11 73.2 101 38.6
Sc03g0004530 Simmondsia chinensis HOM05D000876 ORTHO05D000285 4.7e-11 73.2 98 35.7
TWI12G1481 Tripterygium wilfordii HOM05D000876 ORTHO05D000285 4.7e-11 73.2 102 35.3
Hund23719 Selenicereus undatus HOM05D000876 ORTHO05D000285 6.1e-11 72.8 157 28.0
CANSAT64G0872 Cannabis sativa HOM05D000876 ORTHO05D000285 8.0e-11 72.4 101 34.7
Rhsim04G0145400 Rhododendron simsii HOM05D000034 ORTHO05D000285 8.0e-11 72.4 113 36.3
Rhsim08G0093200 Rhododendron simsii HOM05D000034 ORTHO05D000037 8.0e-11 72.4 102 37.3
Hund30880 Selenicereus undatus HOM05D000876 ORTHO05D000285 8.0e-11 72.4 169 27.2
TWI63G0199 Tripterygium wilfordii HOM05D000876 ORTHO05D000285 8.0e-11 72.4 101 37.6
Atru.chr10.1597 Acer truncatum HOM05D000876 ORTHO05D000285 1.0e-10 72.0 100 35.0
Glyma.06G250600 Glycine max HOM05D000876 ORTHO05D000285 1.0e-10 72.0 100 39.0
QL05p031161 Quercus lobata HOM05D000034 ORTHO05D000037 1.0e-10 72.0 101 37.6
TWI23G0996 Tripterygium wilfordii HOM05D000876 ORTHO05D000285 1.0e-10 72.0 103 35.0
TWI34G1578 Tripterygium wilfordii HOM05D000876 ORTHO05D000285 1.0e-10 72.0 103 35.0
TWI34G1784 Tripterygium wilfordii HOM05D000876 ORTHO05D000285 1.0e-10 72.0 101 35.6
TWI38G0708 Tripterygium wilfordii HOM05D000876 ORTHO05D000285 1.0e-10 72.0 101 35.6
TWI38G1661 Tripterygium wilfordii HOM05D000876 ORTHO05D000285 1.0e-10 72.0 101 35.6
Hma1.2p1_0228F.1_g096560 Hydrangea macrophylla HOM05D000876 ORTHO05D000285 1.4e-10 71.6 109 33.9
TPR.G25769 Trifolium pratense HOM05D000876 ORTHO05D000285 1.4e-10 71.6 101 36.6
Rhsim09G0041300 Rhododendron simsii HOM05D000876 ORTHO05D000285 2.3e-10 70.9 101 37.6
Rhsim10G0163900 Rhododendron simsii HOM05D000034 ORTHO05D000285 2.3e-10 70.9 113 35.4
arahy.Tifrunner.gnm1.ann1.2911W9 Arachis hypogaea HOM05D000876 ORTHO05D000285 3.0e-10 70.5 109 33.9
Rhsim09G0200000 Rhododendron simsii HOM05D000034 ORTHO05D000037 3.0e-10 70.5 102 36.3
RhsimUnG0152200 Rhododendron simsii HOM05D000034 ORTHO05D000037 3.0e-10 70.5 102 36.3
TWI75G1494 Tripterygium wilfordii HOM05D000876 ORTHO05D000285 3.0e-10 70.5 103 34.0
Glyma.05G069200 Glycine max HOM05D000876 ORTHO05D000285 4.0e-10 70.1 100 39.0
Hma1.2p1_2073F.1_g313200 Hydrangea macrophylla HOM05D000876 ORTHO05D000285 4.0e-10 70.1 109 33.0
TWI36G1398 Tripterygium wilfordii HOM05D000876 ORTHO05D000285 4.0e-10 70.1 101 35.6
Medtr1g080080 Medicago truncatula HOM05D000876 ORTHO05D000285 6.8e-10 69.3 102 37.3
Medtr2g018710 Medicago truncatula HOM05D000876 ORTHO05D000285 6.8e-10 69.3 102 37.3
Medtr2g086350 Medicago truncatula HOM05D000876 ORTHO05D000285 6.8e-10 69.3 102 37.3
TWI75G0526 Tripterygium wilfordii HOM05D000876 ORTHO05D000285 6.8e-10 69.3 101 35.6
TWI81G0918 Tripterygium wilfordii HOM05D000876 ORTHO05D000285 6.8e-10 69.3 101 35.6
arahy.Tifrunner.gnm1.ann1.X5RLQI Arachis hypogaea HOM05D000034 ORTHO05D000285 8.8e-10 68.9 109 33.0
CsaV3_5G004940 Cucumis sativus L. HOM05D000876 ORTHO05D000285 8.8e-10 68.9 111 36.9
TPR.G22361 Trifolium pratense HOM05D000876 ORTHO05D000285 1.2e-09 68.6 143 32.2
TWI31G1090 Tripterygium wilfordii HOM05D000876 ORTHO05D000285 1.2e-09 68.6 103 33.0
Gorai.006G093000 Gossypium raimondii HOM05D000876 ORTHO05D000285 1.5e-09 68.2 100 38.0
Peaxi162Scf00593g00324 Petunia axillaris HOM05D007579 ORTHO05D000285 1.5e-09 68.2 98 31.6
TWI75G0795 Tripterygium wilfordii HOM05D000876 ORTHO05D000285 1.5e-09 68.2 101 35.6
CANSAT56G2973 Cannabis sativa HOM05D000876 ORTHO05D000285 2.6e-09 67.4 108 31.5
Glyma.19G101700 Glycine max HOM05D000876 ORTHO05D000285 2.6e-09 67.4 100 36.0
Hund14971 Selenicereus undatus HOM05D000876 ORTHO05D000285 3.4e-09 67.0 169 26.6
arahy.Tifrunner.gnm1.ann1.1GV9MA Arachis hypogaea HOM05D000451 ORTHO05D000351 4.4e-09 66.6 153 28.1
arahy.Tifrunner.gnm1.ann1.PEG6DJ Arachis hypogaea HOM05D000034 ORTHO05D000037 4.4e-09 66.6 109 32.1
arahy.Tifrunner.gnm1.ann1.9S6AA1 Arachis hypogaea HOM05D000451 ORTHO05D000351 5.7e-09 66.2 153 28.1
Nitab4.5_0000072g0060 Nicotiana tabacum HOM05D000876 ORTHO05D000285 7.5e-09 65.9 107 32.7
vmacro19158 Vaccinium macrocarpon HOM05D000034 ORTHO05D000285 1.3e-08 65.1 145 33.1
Rhsim06G0077800 Rhododendron simsii HOM05D000876 ORTHO05D000285 2.2e-08 64.3 101 36.6
RcHm_v2.0_Chr7g0199281 Rosa chinensis HOM05D000876 ORTHO05D000285 2.2e-08 64.3 100 36.0
AUR62020810 Chenopodium quinoa HOM05D000034 ORTHO05D000037 2.8e-08 63.9 88 36.4
Gorai.004G036300 Gossypium raimondii HOM05D000876 ORTHO05D000285 3.7e-08 63.5 114 34.2
Gorai.008G032400 Gossypium raimondii HOM05D000876 ORTHO05D000285 3.7e-08 63.5 114 34.2
Hma1.2p1_1035F.1_g250490 Hydrangea macrophylla HOM05D000876 ORTHO05D000285 3.7e-08 63.5 109 32.1
TWI60G1225 Tripterygium wilfordii HOM05D000876 ORTHO05D000285 3.7e-08 63.5 108 31.5
CiPaw.04G117800 Carya illinoinensis HOM05D000876 ORTHO05D000285 4.8e-08 63.2 181 24.3
TAR555G0001 Trochodendron aralioides HOM05D000034 ORTHO05D000037 8.3e-08 62.4 81 34.6
vmacro09328 Vaccinium macrocarpon HOM05D000034 ORTHO05D000285 1.1e-07 62.0 102 37.3
arahy.Tifrunner.gnm1.ann1.GG5U8X Arachis hypogaea HOM05D000876 ORTHO05D000285 1.4e-07 61.6 97 34.0
Glyma.18G030600 Glycine max HOM05D000665 ORTHO05D000285 1.4e-07 61.6 102 37.3
Os04g0243400 Oryza sativa ssp. japonica HOM05D000876 ORTHO05D000285 3.1e-07 60.5 120 31.7
Psat0s2829g0240 Pisum sativum HOM05D011477 ORTHO05D000285 3.1e-07 60.5 105 33.3
arahy.Tifrunner.gnm1.ann1.NV9TN2 Arachis hypogaea HOM05D000034 ORTHO05D000037 4.1e-07 60.1 98 32.7
Rhsim11G0045400 Rhododendron simsii HOM05D019962 ORTHO05D000285 4.1e-07 60.1 80 37.5
vmacro21342 Vaccinium macrocarpon HOM05D000034 ORTHO05D000037 4.1e-07 60.1 111 32.4
arahy.Tifrunner.gnm1.ann1.8YPI5A Arachis hypogaea HOM05D000034 ORTHO05D000037 5.4e-07 59.7 98 32.7
CSS0050094 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000037 5.4e-07 59.7 85 40.0
arahy.Tifrunner.gnm1.ann1.Z5ZQ3Q Arachis hypogaea HOM05D000034 ORTHO05D000037 7.0e-07 59.3 98 32.7
Potri.008G196901 Populus trichocarpa HOM05D000876 ORTHO05D000285 7.0e-07 59.3 105 35.2
Psat5g127400 Pisum sativum HOM05D000665 ORTHO05D000285 9.1e-07 58.9 99 35.4
Rhsim03G0139500 Rhododendron simsii HOM05D000876 ORTHO05D000285 1.2e-06 58.5 99 35.4
CAN.G462.3 Capsicum annuum HOM05D000876 ORTHO05D000285 1.6e-06 58.2 165 28.5
Psat0s3845g0040 Pisum sativum HOM05D011477 ORTHO05D000285 1.6e-06 58.2 121 32.2
arahy.Tifrunner.gnm1.ann1.7Y6611 Arachis hypogaea HOM05D000034 ORTHO05D000037 2.0e-06 57.8 88 33.0
TWI53G2118 Tripterygium wilfordii HOM05D000876 ORTHO05D000285 2.0e-06 57.8 92 32.6
Zm00001eb217070 Zea mays HOM05D000876 ORTHO05D000285 2.0e-06 57.8 98 30.6
arahy.Tifrunner.gnm1.ann1.6409NJ Arachis hypogaea HOM05D000876 ORTHO05D000285 2.7e-06 57.4 101 33.7
arahy.Tifrunner.gnm1.ann1.KMV29V Arachis hypogaea HOM05D000876 ORTHO05D000285 2.7e-06 57.4 101 33.7
Solyc10g049530.3 Solanum lycopersicum HOM05D000034 ORTHO05D000037 3.5e-06 57.0 98 32.7
Glyma.18G191100 Glycine max HOM05D000876 ORTHO05D000285 7.7e-06 55.8 68 39.7
Psat5g073200 Pisum sativum HOM05D011477 ORTHO05D000285 7.7e-06 55.8 133 30.1
Solyc12g039050.3 Solanum lycopersicum HOM05D000876 ORTHO05D000285 7.7e-06 55.8 98 31.6


User provided reference genes

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