Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037917 Camellia sinensis var. sinensis HOM05D006830 ORTHO05D008119 5.0e-104 381.3 225 100.0
CSS0030660 Camellia sinensis var. sinensis HOM05D006830 ORTHO05D008119 1.6e-97 359.8 244 90.2
Rhsim05G0232400 Rhododendron simsii HOM05D006830 ORTHO05D008119 3.8e-35 152.5 208 48.6
Actinidia29020 Actinidia chinensis HOM05D006830 ORTHO05D008119 1.8e-32 143.7 276 43.5
vmacro20384 Vaccinium macrocarpon HOM05D006830 ORTHO05D008119 1.1e-31 141.0 204 49.0
CSS0029082 Camellia sinensis var. sinensis HOM05D006830 ORTHO05D008119 8.8e-24 114.8 261 38.3
Dinv16956 Davidia involucrata HOM05D006830 ORTHO05D008119 9.1e-21 104.8 264 41.3
Hma1.2p1_0537F.1_g174220 Hydrangea macrophylla HOM05D006830 ORTHO05D008119 1.7e-19 100.5 284 34.9
GSVIVG01025871001 Vitis vinifera HOM05D006830 ORTHO05D008119 2.2e-19 100.1 260 36.2
Lj2A57T75 Lonicera japonica HOM05D006830 ORTHO05D008119 1.1e-18 97.8 232 37.9
Haze_21197 Corylus avellana HOM05D006830 ORTHO05D008119 1.1e-15 87.8 211 37.4
TAR636G3618 Trochodendron aralioides HOM05D006830 ORTHO05D008119 2.0e-15 87.0 258 35.3
TWI77G0580 Tripterygium wilfordii HOM05D006830 ORTHO05D008119 7.4e-15 85.1 241 33.2
Cfa017009 Carpinus fangiana HOM05D006830 ORTHO05D008119 9.7e-15 84.7 195 37.4
Prupe.6G296200 Prunus persica HOM05D006830 ORTHO05D008119 1.3e-14 84.3 260 32.3
MD12G1191100 Malus domestica HOM05D006830 ORTHO05D008119 2.2e-14 83.6 209 37.8
Nn5g26811 Nelumbo nucifera HOM05D006830 ORTHO05D008119 2.8e-14 83.2 259 33.2
PGR031G0539 Punica granatum HOM05D006830 ORTHO05D008119 1.1e-13 81.3 263 33.1
Sc20g0007150 Simmondsia chinensis HOM05D006830 ORTHO05D008119 1.1e-13 81.3 242 31.8
QL07p031724 Quercus lobata HOM05D006830 ORTHO05D008119 1.4e-13 80.9 206 35.9
Potri.016G139000 Populus trichocarpa HOM05D006830 ORTHO05D008119 2.4e-13 80.1 240 34.6
Manes.08G169600 Manihot esculenta HOM05D006830 ORTHO05D008119 3.1e-13 79.7 260 32.3
Cpa.g.sc72.63 Carica papaya HOM05D006830 ORTHO05D008119 7.0e-13 78.6 240 32.1
Potri.006G110400 Populus trichocarpa HOM05D006830 ORTHO05D008119 3.5e-12 76.3 193 33.7
Lj1g0026994 Lotus japonicus HOM05D006830 ORTHO05D008119 2.2e-11 73.6 200 38.5
Thecc.04G149300 Theobroma cacao HOM05D006830 ORTHO05D008119 2.2e-11 73.6 193 34.7
TWI74G0093 Tripterygium wilfordii HOM05D006830 ORTHO05D008119 2.2e-11 73.6 255 32.5
RcHm_v2.0_Chr3g0460131 Rosa chinensis HOM05D006830 ORTHO05D008119 8.5e-11 71.6 259 29.3
Nitab4.5_0001876g0080 Nicotiana tabacum HOM05D006830 ORTHO05D008119 4.2e-10 69.3 203 31.5
Nitab4.5_0000048g0180 Nicotiana tabacum HOM05D006830 ORTHO05D008119 5.5e-10 68.9 255 30.6
arahy.Tifrunner.gnm1.ann1.QV5EPW Arachis hypogaea HOM05D006830 ORTHO05D008119 7.2e-10 68.6 215 35.3
Actinidia11494 Actinidia chinensis HOM05D040087 ORTHO05D008119 9.4e-10 68.2 76 59.2
FvH4_6g09531 Fragaria vesca HOM05D006830 ORTHO05D008119 9.4e-10 68.2 222 31.5
FAN14G4211 Fragaria x ananassa HOM05D006830 ORTHO05D008119 9.4e-10 68.2 222 31.5
Oeu030099.2 Olea europaea HOM05D006830 ORTHO05D008119 9.4e-10 68.2 260 31.9
arahy.Tifrunner.gnm1.ann1.E2XN58 Arachis hypogaea HOM05D006830 ORTHO05D008119 2.1e-09 67.0 226 32.3
FAN05G1111 Fragaria x ananassa HOM05D006830 ORTHO05D008119 4.7e-09 65.9 221 31.2
FAN09G0658 Fragaria x ananassa HOM05D006830 ORTHO05D008119 8.0e-09 65.1 222 30.6
Gorai.006G236000 Gossypium raimondii HOM05D006830 ORTHO05D008119 8.0e-09 65.1 188 30.9
Eucgr.A00784 Eucalyptus grandis HOM05D006830 ORTHO05D008119 1.0e-08 64.7 260 29.2
MBI15_g32284_MAGBIO Magnolia biondii HOM05D006830 ORTHO05D008119 1.8e-08 63.9 194 31.4
FAN02G1118 Fragaria x ananassa HOM05D006830 ORTHO05D008119 3.0e-08 63.2 219 30.6
Sabra04G0154900 Salix brachista HOM05D006830 ORTHO05D008119 3.0e-08 63.2 79 53.2
MELO3C009096.2 Cucumis melo HOM05D006830 ORTHO05D008119 5.2e-08 62.4 230 29.1
AUR62029792 Chenopodium quinoa HOM05D006830 ORTHO05D008119 6.7e-08 62.0 243 28.8
SGA_v2.0_scaffold85G26596 Striga asiatica HOM05D006830 ORTHO05D008119 2.0e-07 60.5 83 49.4
BcaC01g05528 Brassica carinata HOM05D006830 ORTHO05D008119 3.3e-07 59.7 127 33.9
C03p25270 Brassica napus HOM05D006830 ORTHO05D008119 4.4e-07 59.3 215 27.4
BolC3t14921H Brassica oleracea HOM05D006830 ORTHO05D008119 4.4e-07 59.3 215 27.4
Gohir.D09G215500 Gossypium hirsutum HOM05D006830 ORTHO05D008119 4.4e-07 59.3 188 32.4
Oeu026939.4 Olea europaea HOM05D006830 ORTHO05D008119 4.4e-07 59.3 256 29.7
Ciclev10011645m.g Citrus clementina HOM05D006830 ORTHO05D008119 5.7e-07 58.9 229 29.3
A03p21400 Brassica napus HOM05D006830 ORTHO05D008119 7.5e-07 58.5 215 27.0
AUR62006437 Chenopodium quinoa HOM05D006830 ORTHO05D008119 9.7e-07 58.2 245 27.8
Glyma.09G273000 Glycine max HOM05D006830 ORTHO05D008119 9.7e-07 58.2 230 28.3
Medtr7g073700 Medicago truncatula HOM05D006830 ORTHO05D008119 1.3e-06 57.8 257 29.2
BraA03t11375Z Brassica rapa HOM05D006830 ORTHO05D008119 1.7e-06 57.4 215 26.5
Carub.0004s2057 Capsella rubella HOM05D006830 ORTHO05D008119 1.7e-06 57.4 213 28.6
Atru.chr8.80 Acer truncatum HOM05D006830 ORTHO05D008119 2.2e-06 57.0 226 30.5
COL.COLO4_21252 Corchorus olitorius HOM05D006830 ORTHO05D008119 2.2e-06 57.0 188 32.4
ClCG10G022820 Citrullus lanatus HOM05D006830 ORTHO05D008119 2.8e-06 56.6 83 47.0
Thhalv10016585m.g Eutrema salsugineum HOM05D006830 ORTHO05D008119 4.8e-06 55.8 114 36.0
EL10Ac7g17129 Beta vulgaris HOM05D006830 ORTHO05D008119 6.3e-06 55.5 251 29.1
Solyc09g016940.4 Solanum lycopersicum HOM05D006830 ORTHO05D008119 6.3e-06 55.5 203 28.1


User provided reference genes

Program Settings