Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037914 Camellia sinensis var. sinensis HOM05D003832 ORTHO05D004365 5.8e-40 167.2 87 100.0
CSS0017606 Camellia sinensis var. sinensis HOM05D003832 ORTHO05D004365 1.9e-38 162.2 87 97.7
Rhsim01G0116900 Rhododendron simsii HOM05D003832 ORTHO05D004365 2.0e-16 89.0 49 83.7
DCAR_018031 Daucus carota HOM05D003832 ORTHO05D004365 3.4e-16 88.2 49 79.6
Dinv41177 Davidia involucrata HOM05D003832 ORTHO05D004365 7.6e-16 87.0 49 81.6
Lj4g0009154 Lotus japonicus HOM05D003832 ORTHO05D004365 7.6e-16 87.0 49 81.6
Ciclev10009594m.g Citrus clementina HOM05D003832 ORTHO05D004365 9.9e-16 86.7 49 79.6
Manes.02G069300 Manihot esculenta HOM05D003832 ORTHO05D004365 9.9e-16 86.7 49 83.7
arahy.Tifrunner.gnm1.ann1.K6AR5W Arachis hypogaea HOM05D003832 ORTHO05D004365 2.2e-15 85.5 49 79.6
arahy.Tifrunner.gnm1.ann1.S5DLTG Arachis hypogaea HOM05D003832 ORTHO05D004365 2.2e-15 85.5 49 79.6
arahy.Tifrunner.gnm1.ann1.SNS3QW Arachis hypogaea HOM05D003832 ORTHO05D004365 2.2e-15 85.5 49 79.6
TWI63G0052 Tripterygium wilfordii HOM05D003832 ORTHO05D004365 2.9e-15 85.1 49 77.6
Oeu064557.2 Olea europaea HOM05D003832 ORTHO05D004365 3.8e-15 84.7 49 77.6
Cc02_g28290 Coffea canephora HOM05D003832 ORTHO05D004365 4.9e-15 84.3 49 77.6
COL.COLO4_07061 Corchorus olitorius HOM05D003832 ORTHO05D004365 4.9e-15 84.3 49 79.6
Duzib170G0568 Durio zibethinus HOM05D003832 ORTHO05D004365 4.9e-15 84.3 49 77.6
Hma1.2p1_1326F.1_g275840 Hydrangea macrophylla HOM05D003832 ORTHO05D004365 4.9e-15 84.3 49 77.6
THA.LOC104800261 Tarenaya hassleriana HOM05D003832 ORTHO05D004365 4.9e-15 84.3 49 79.6
Lalb_Chr13g0300001 Lupinus albus HOM05D003832 ORTHO05D004365 6.4e-15 84.0 49 77.6
MBI19_g15084_MAGBIO Magnolia biondii HOM05D001562 ORTHO05D001437 6.4e-15 84.0 49 79.6
MBI19_g45101_MAGBIO Magnolia biondii HOM05D003832 ORTHO05D004365 6.4e-15 84.0 49 79.6
SalBow5G0739 Salvia bowleyana HOM05D003832 ORTHO05D004365 6.4e-15 84.0 49 77.6
SalBow5G5556 Salvia bowleyana HOM05D003832 ORTHO05D004365 6.4e-15 84.0 49 77.6
Atru.chr12.1654 Acer truncatum HOM05D003832 ORTHO05D004365 8.4e-15 83.6 50 82.0
QL07p021332 Quercus lobata HOM05D003832 ORTHO05D004365 8.4e-15 83.6 49 79.6
Thecc.09G186100 Theobroma cacao HOM05D003832 ORTHO05D004365 8.4e-15 83.6 49 77.6
vmacro20813 Vaccinium macrocarpon HOM05D003832 ORTHO05D004365 8.4e-15 83.6 49 79.6
GSVIVG01010856001 Vitis vinifera HOM05D003832 ORTHO05D004365 8.4e-15 83.6 49 79.6
CiPaw.07G197200 Carya illinoinensis HOM05D003832 ORTHO05D004365 1.1e-14 83.2 49 79.6
Lj5A749G38 Lonicera japonica HOM05D003832 ORTHO05D004365 1.4e-14 82.8 50 76.0
Haze_22022 Corylus avellana HOM05D003832 ORTHO05D004365 1.9e-14 82.4 49 79.6
TWI34G0584 Tripterygium wilfordii HOM05D003832 ORTHO05D004365 1.9e-14 82.4 49 77.6
MELO3C017427.2 Cucumis melo HOM05D003832 ORTHO05D004365 3.2e-14 81.6 49 73.5
CsaV3_1G031890 Cucumis sativus L. HOM05D003832 ORTHO05D004365 3.2e-14 81.6 49 73.5
Oeu005620.2 Olea europaea HOM05D003832 ORTHO05D004365 3.2e-14 81.6 49 75.5
Sabra06G0056000 Salix brachista HOM05D003832 ORTHO05D004365 3.2e-14 81.6 49 77.6
CAN.G199.14 Capsicum annuum HOM05D003832 ORTHO05D004365 4.2e-14 81.3 49 75.5
Medtr7g086830 Medicago truncatula HOM05D003832 ORTHO05D004365 4.2e-14 81.3 49 77.6
TPR.G17987 Trifolium pratense HOM05D003832 ORTHO05D004365 4.2e-14 81.3 49 77.6
TPR.G31075 Trifolium pratense HOM05D003832 ORTHO05D004365 4.2e-14 81.3 49 77.6
TAR626G0116 Trochodendron aralioides HOM05D003832 ORTHO05D004365 5.4e-14 80.9 49 77.6
ATR0307G033 Amborella trichopoda HOM05D003832 ORTHO05D004365 7.1e-14 80.5 49 75.5
Phvul.003G141300 Phaseolus vulgaris HOM05D003832 ORTHO05D004365 7.1e-14 80.5 49 77.6
Psat3g085920 Pisum sativum HOM05D003832 ORTHO05D004365 7.1e-14 80.5 54 70.4
ClCG06G013620 Citrullus lanatus HOM05D003832 ORTHO05D004365 9.2e-14 80.1 49 71.4
Solyc07g008650.4 Solanum lycopersicum HOM05D003832 ORTHO05D004365 9.2e-14 80.1 49 73.5
Sopen07g004580 Solanum pennellii HOM05D003832 ORTHO05D004365 9.2e-14 80.1 49 73.5
AUR62017542 Chenopodium quinoa HOM05D003832 ORTHO05D004365 1.2e-13 79.7 49 73.5
Glyma.13G100600 Glycine max HOM05D003832 ORTHO05D004365 1.2e-13 79.7 49 75.5
Glyma.17G059300 Glycine max HOM05D003832 ORTHO05D004365 1.6e-13 79.3 49 73.5
Potri.006G075300 Populus trichocarpa HOM05D003832 ORTHO05D004365 1.6e-13 79.3 49 77.6
ECA234G0864 Erigeron canadensis HOM05D003832 ORTHO05D004365 2.1e-13 79.0 49 75.5
Nitab4.5_0000725g0040 Nicotiana tabacum HOM05D003832 ORTHO05D004365 2.1e-13 79.0 49 73.5
Peaxi162Scf01038g00134 Petunia axillaris HOM05D003832 ORTHO05D004365 2.1e-13 79.0 49 73.5
Sed0004806 Sechium edule HOM05D003832 ORTHO05D004365 2.1e-13 79.0 49 75.5
VMungo1127G0216 Vigna mungo HOM05D003832 ORTHO05D004365 2.1e-13 79.0 49 75.5
VMungo1215G0400 Vigna mungo HOM05D003832 ORTHO05D004365 2.1e-13 79.0 49 75.5
Gohir.A04G090600 Gossypium hirsutum HOM05D003832 ORTHO05D004365 2.7e-13 78.6 49 75.5
Gorai.012G114300 Gossypium raimondii HOM05D003832 ORTHO05D004365 2.7e-13 78.6 49 75.5
MD13G1241600 Malus domestica HOM05D003832 ORTHO05D004365 3.5e-13 78.2 49 71.4
Aqoxy2G00660 Aquilegia oxysepala HOM05D003832 ORTHO05D004365 4.6e-13 77.8 49 71.4
ECA232G4969 Erigeron canadensis HOM05D003832 ORTHO05D004365 4.6e-13 77.8 49 75.5
Sc20g0003900 Simmondsia chinensis HOM05D003832 ORTHO05D004365 4.6e-13 77.8 49 73.5
MSTRG.10440 Avicennia marina HOM05D003832 ORTHO05D004365 6.0e-13 77.4 49 73.5
unitig_8.g4676 Utricularia gibba HOM05D003832 ORTHO05D004365 6.0e-13 77.4 49 73.5
Thhalv10001035m.g Eutrema salsugineum HOM05D003832 ORTHO05D004365 7.8e-13 77.0 49 67.3
FAN04G3185 Fragaria x ananassa HOM05D003832 ORTHO05D004365 7.8e-13 77.0 55 65.5
RcHm_v2.0_Chr4g0399541 Rosa chinensis HOM05D003832 ORTHO05D004365 7.8e-13 77.0 49 73.5
RcHm_v2.0_Chr4g0399571 Rosa chinensis HOM05D003832 ORTHO05D004365 7.8e-13 77.0 49 73.5
Sp1g35130 Schrenkiella parvula HOM05D003832 ORTHO05D004365 7.8e-13 77.0 49 71.4
AUR62015080 Chenopodium quinoa HOM05D003832 ORTHO05D004365 1.0e-12 76.6 49 69.4
Prupe.1G075100 Prunus persica HOM05D003832 ORTHO05D004365 1.0e-12 76.6 49 71.4
BcaC07g37168 Brassica carinata HOM05D003832 ORTHO05D004365 1.3e-12 76.3 49 69.4
C08p05410 Brassica napus HOM05D003832 ORTHO05D004365 1.3e-12 76.3 49 69.4
BolC8t47358H Brassica oleracea HOM05D003832 ORTHO05D004365 1.3e-12 76.3 49 69.4
CANSAT80G0863 Cannabis sativa HOM05D003832 ORTHO05D004365 1.3e-12 76.3 49 73.5
CANSAT80G1489 Cannabis sativa HOM05D003832 ORTHO05D004365 1.3e-12 76.3 49 73.5
Eucgr.E02911 Eucalyptus grandis HOM05D003832 ORTHO05D004365 1.3e-12 76.3 49 69.4
FvH4_4g07280 Fragaria vesca HOM05D003832 ORTHO05D004365 1.3e-12 76.3 49 71.4
FAN12G0553 Fragaria x ananassa HOM05D003811 ORTHO05D004470 1.3e-12 76.3 49 71.4
FAN17G1929 Fragaria x ananassa HOM05D003832 ORTHO05D004365 1.3e-12 76.3 49 71.4
FAN22G0067 Fragaria x ananassa HOM05D003832 ORTHO05D004365 1.3e-12 76.3 49 71.4
PSO801G0378 Papaver somniferum HOM05D003832 ORTHO05D004365 1.3e-12 76.3 49 69.4
CDE04G0848 Ceratophyllum demersum HOM05D003832 ORTHO05D004365 1.7e-12 75.9 49 69.4
Eucgr.E02102 Eucalyptus grandis HOM05D003832 ORTHO05D004365 1.7e-12 75.9 49 69.4
Eucgr.E02248 Eucalyptus grandis HOM05D003832 ORTHO05D004365 1.7e-12 75.9 48 70.8
Gohir.D04G130600 Gossypium hirsutum HOM05D003832 ORTHO05D004365 1.7e-12 75.9 49 73.5
HanXRQChr16g0514821 Helianthus annuus HOM05D003832 ORTHO05D004365 1.7e-12 75.9 49 73.5
AL1G54750 Arabidopsis lyrata HOM05D003832 ORTHO05D004365 2.3e-12 75.5 49 69.4
AT1G48175 Arabidopsis thaliana HOM05D003832 ORTHO05D004365 2.3e-12 75.5 49 69.4
Carub.0001s3726 Capsella rubella HOM05D003832 ORTHO05D004365 2.3e-12 75.5 49 69.4
FvH4_5g15360 Fragaria vesca HOM05D003832 ORTHO05D004365 2.3e-12 75.5 49 69.4
FAN18G2818 Fragaria x ananassa HOM05D003832 ORTHO05D004365 2.3e-12 75.5 49 69.4
RcHm_v2.0_Chr7g0180711 Rosa chinensis HOM05D003832 ORTHO05D004365 2.3e-12 75.5 49 71.4
Eucgr.E02171 Eucalyptus grandis HOM05D003832 ORTHO05D004365 3.0e-12 75.1 49 69.4
Eucgr.E02232 Eucalyptus grandis HOM05D003832 ORTHO05D004365 3.0e-12 75.1 49 69.4
Eucgr.E02530 Eucalyptus grandis HOM05D003832 ORTHO05D004365 3.0e-12 75.1 49 67.3
Nitab4.5_0010556g0010 Nicotiana tabacum HOM05D003832 ORTHO05D004365 3.0e-12 75.1 47 74.5
Aa31LG3G7130 Aethionema arabicum HOM05D003832 ORTHO05D004365 3.9e-12 74.7 49 69.4
Lsat_1_v5_gn_4_41160 Lactuca sativa HOM05D003832 ORTHO05D004365 3.9e-12 74.7 49 69.4
Eucgr.E02551 Eucalyptus grandis HOM05D003832 ORTHO05D004365 5.1e-12 74.3 49 69.4
Eucgr.E02915 Eucalyptus grandis HOM05D003832 ORTHO05D004365 5.1e-12 74.3 49 67.3
C06p02680 Brassica napus HOM05D003832 ORTHO05D004365 6.6e-12 73.9 49 67.3
BolC6t35394H Brassica oleracea HOM05D003832 ORTHO05D004365 6.6e-12 73.9 49 67.3
CDE07G0789 Ceratophyllum demersum HOM05D001368 ORTHO05D003846 8.7e-12 73.6 49 67.3
Lsat_1_v5_gn_5_90120 Lactuca sativa HOM05D003832 ORTHO05D004365 1.1e-11 73.2 49 65.3
PGSC0003DMG400022976 Solanum tuberosum HOM05D003832 ORTHO05D004365 1.1e-11 73.2 47 70.2
Zm00001eb054120 Zea mays HOM05D003832 ORTHO05D004365 1.1e-11 73.2 49 67.3
EL10Ac9g22760 Beta vulgaris HOM05D003832 ORTHO05D004365 1.5e-11 72.8 50 66.0
BcaB04g17461 Brassica carinata HOM05D003832 ORTHO05D004365 1.5e-11 72.8 49 67.3
A08p05010 Brassica napus HOM05D003832 ORTHO05D004365 1.5e-11 72.8 49 67.3
BraA08t32523Z Brassica rapa HOM05D003832 ORTHO05D004365 1.5e-11 72.8 49 67.3
BraA08t32534Z Brassica rapa HOM05D003832 ORTHO05D004365 1.5e-11 72.8 49 67.3
Migut.L01881 Erythranthe guttata HOM05D003832 ORTHO05D004365 1.5e-11 72.8 49 67.3
HPP92_008659 Vanilla planifolia HOM05D003832 ORTHO05D004365 1.5e-11 72.8 49 71.4
Aqoxy3G00356 Aquilegia oxysepala HOM05D003832 ORTHO05D004365 1.9e-11 72.4 49 67.3
BcaC08g43013 Brassica carinata HOM05D003832 ORTHO05D004365 1.9e-11 72.4 49 65.3
C09p47960 Brassica napus HOM05D003832 ORTHO05D004365 1.9e-11 72.4 51 62.7
FAN08G2334 Fragaria x ananassa HOM05D003832 ORTHO05D004365 2.5e-11 72.0 49 69.4
BcaB07g33785 Brassica carinata HOM05D003832 ORTHO05D004365 3.3e-11 71.6 49 65.3
Nn3g18876 Nelumbo nucifera HOM05D003832 ORTHO05D004365 3.3e-11 71.6 49 75.5
BcaC06g35194 Brassica carinata HOM05D003832 ORTHO05D004365 4.3e-11 71.2 51 62.7
A08p05170 Brassica napus HOM05D003832 ORTHO05D004365 4.3e-11 71.2 49 65.3
Eucgr.E02296 Eucalyptus grandis HOM05D003832 ORTHO05D004365 4.3e-11 71.2 48 66.7
Ah.01g002120 Amaranthus hybridus HOM05D003832 ORTHO05D004365 5.6e-11 70.9 49 59.2
Ah.01g002650 Amaranthus hybridus HOM05D003832 ORTHO05D004365 5.6e-11 70.9 49 59.2
A05p26850 Brassica napus HOM05D003832 ORTHO05D004365 9.6e-11 70.1 50 64.0
A07p42340 Brassica napus HOM05D003832 ORTHO05D004365 9.6e-11 70.1 50 64.0
Sp7g33250 Schrenkiella parvula HOM05D003832 ORTHO05D004365 9.6e-11 70.1 49 65.3
C07p18790 Brassica napus HOM05D003832 ORTHO05D004365 1.3e-10 69.7 51 60.8
BolC9t57639H Brassica oleracea HOM05D003832 ORTHO05D004365 1.3e-10 69.7 51 60.8
AUR62005177 Chenopodium quinoa HOM05D003832 ORTHO05D004365 1.3e-10 69.7 49 59.2
Nitab4.5_0000617g0240 Nicotiana tabacum HOM05D003832 ORTHO05D004365 1.3e-10 69.7 47 70.2
BraA05t21564Z Brassica rapa HOM05D003832 ORTHO05D004365 1.6e-10 69.3 48 64.6
Cc02_g28310 Coffea canephora HOM05D003832 ORTHO05D004365 1.6e-10 69.3 49 61.2
Eucgr.E02201 Eucalyptus grandis HOM05D003832 ORTHO05D004365 1.6e-10 69.3 50 62.0
PSO832G0096 Papaver somniferum HOM05D003832 ORTHO05D004365 1.6e-10 69.3 49 65.3
Ah.01g001730 Amaranthus hybridus HOM05D003832 ORTHO05D004365 2.1e-10 68.9 49 57.1
EL10Ac4g09380 Beta vulgaris HOM05D003832 ORTHO05D004365 2.1e-10 68.9 50 62.0
EL10Ac4g09383 Beta vulgaris HOM05D003832 ORTHO05D004365 2.1e-10 68.9 50 62.0
Eucgr.E02175 Eucalyptus grandis HOM05D003832 ORTHO05D004365 2.1e-10 68.9 49 67.3
Thhalv10012316m.g Eutrema salsugineum HOM05D003832 ORTHO05D004365 2.1e-10 68.9 49 61.2
BolC7t42388H Brassica oleracea HOM05D003832 ORTHO05D004365 2.8e-10 68.6 51 60.8
CBR_g19929 Chara braunii HOM05D003832 ORTHO05D004365 2.8e-10 68.6 49 63.3
Eucgr.E02142 Eucalyptus grandis HOM05D003832 ORTHO05D004365 8.1e-10 67.0 49 63.3
Eucgr.E02304 Eucalyptus grandis HOM05D003832 ORTHO05D004365 4.0e-09 64.7 47 63.8
BraA05t20080Z Brassica rapa HOM05D003832 ORTHO05D004365 5.3e-09 64.3 48 62.5
Eucgr.E02600 Eucalyptus grandis HOM05D003832 ORTHO05D004365 2.0e-08 62.4 47 66.0
SMO164G0036 Selaginella moellendorffii HOM05D003832 ORTHO05D004365 5.8e-08 60.8 49 59.2
SEGI_25137 Sequoiadendron giganteum HOM05D003832 ORTHO05D004365 5.8e-08 60.8 49 59.2
Mapoly0047s0093 Marchantia polymorpha HOM05D003832 ORTHO05D004365 7.6e-08 60.5 54 53.7
Os03g0321900 Oryza sativa ssp. japonica HOM05D003832 ORTHO05D004365 7.6e-08 60.5 39 64.1
Pp3c14_6040 Physcomitrium patens HOM05D003832 ORTHO05D004365 5.4e-06 54.3 52 57.7


User provided reference genes

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