Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037895 Camellia sinensis var. sinensis HOM05D007607 ORTHO05D009603 6.3e-60 234.2 142 100.0
CSS0042213 Camellia sinensis var. sinensis HOM05D007607 ORTHO05D009603 7.9e-47 190.7 133 92.5
Actinidia28975 Actinidia chinensis HOM05D007607 ORTHO05D009603 7.5e-29 131.0 140 57.9
CiPaw.01G169900 Carya illinoinensis HOM05D007607 ORTHO05D009603 2.7e-26 122.5 141 57.4
Haze_01353 Corylus avellana HOM05D007607 ORTHO05D009603 1.5e-24 116.7 142 55.6
RhsimUnG0015300 Rhododendron simsii HOM05D007607 ORTHO05D009603 3.2e-24 115.5 143 57.3
QL10p057723 Quercus lobata HOM05D007607 ORTHO05D009603 5.5e-24 114.8 141 58.2
QL10p057428 Quercus lobata HOM05D007607 ORTHO05D009603 1.2e-23 113.6 141 56.7
CiPaw.02G100000 Carya illinoinensis HOM05D007607 ORTHO05D009603 2.7e-23 112.5 140 55.7
Rhsim02G0085800 Rhododendron simsii HOM05D007607 ORTHO05D009603 4.7e-23 111.7 132 62.1
Cfa015274 Carpinus fangiana HOM05D007607 ORTHO05D009603 1.8e-22 109.8 143 47.6
Ciclev10022842m.g Citrus clementina HOM05D007607 ORTHO05D009603 1.8e-22 109.8 143 55.2
Dinv18311 Davidia involucrata HOM05D007607 ORTHO05D009603 5.2e-22 108.2 142 57.7
GSVIVG01038189001 Vitis vinifera HOM05D007607 ORTHO05D009603 9.8e-21 104.0 143 58.0
Potri.013G128700 Populus trichocarpa HOM05D007607 ORTHO05D009603 1.2e-18 97.1 142 51.4
Manes.05G131900 Manihot esculenta HOM05D007607 ORTHO05D009603 1.6e-18 96.7 141 51.1
Thecc.04G162800 Theobroma cacao HOM05D007607 ORTHO05D009603 5.9e-18 94.7 140 47.9
Duzib212G0637 Durio zibethinus HOM05D007607 ORTHO05D009603 1.3e-17 93.6 144 46.5
Cc03_g14540 Coffea canephora HOM05D007607 ORTHO05D009603 1.5e-16 90.1 135 55.6
Gohir.D10G121500 Gossypium hirsutum HOM05D007607 ORTHO05D009603 9.5e-16 87.4 140 49.3
Gorai.011G133600 Gossypium raimondii HOM05D007607 ORTHO05D009603 9.5e-16 87.4 140 49.3
Gohir.A10G145500 Gossypium hirsutum HOM05D007607 ORTHO05D009603 1.6e-15 86.7 140 50.0
Migut.N03053 Erythranthe guttata HOM05D007607 ORTHO05D009603 5.2e-14 81.6 128 53.1
TAR362G0213 Trochodendron aralioides HOM05D007607 ORTHO05D009603 6.8e-14 81.3 141 49.6
FvH4_1g00500 Fragaria vesca HOM05D007607 ORTHO05D009603 8.9e-14 80.9 139 51.8
PSO017G0391 Papaver somniferum HOM05D007607 ORTHO05D009603 1.5e-13 80.1 107 47.7
Cpa.g.sc343.4 Carica papaya HOM05D007607 ORTHO05D009603 2.6e-13 79.3 136 50.0
Eucgr.H00285 Eucalyptus grandis HOM05D007607 ORTHO05D009603 4.4e-13 78.6 142 52.8
MD15G1147800 Malus domestica HOM05D007607 ORTHO05D009603 5.7e-13 78.2 117 53.0
RcHm_v2.0_Chr2g0085131 Rosa chinensis HOM05D007607 ORTHO05D009603 5.7e-13 78.2 139 53.2
MD02G1004100 Malus domestica HOM05D007607 ORTHO05D009603 9.8e-13 77.4 109 52.3
PSO675G5570 Papaver somniferum HOM05D007607 ORTHO05D009603 1.3e-12 77.0 101 46.5
EL10Ac3g06110 Beta vulgaris HOM05D007607 ORTHO05D009603 1.7e-12 76.6 92 54.3
MSTRG.24562 Avicennia marina HOM05D007607 ORTHO05D009603 2.2e-12 76.3 133 51.1
CAN.G1237.5 Capsicum annuum HOM05D007607 ORTHO05D009603 2.8e-12 75.9 119 54.6
MBI10_g16327_MAGBIO Magnolia biondii HOM05D007607 ORTHO05D009603 3.7e-12 75.5 127 49.6
SalBow6G6796 Salvia bowleyana HOM05D007607 ORTHO05D009603 3.7e-12 75.5 136 48.5
Hund12359 Selenicereus undatus HOM05D007607 ORTHO05D009603 3.7e-12 75.5 126 45.2
MSTRG.22043 Avicennia marina HOM05D007607 ORTHO05D009603 1.1e-11 73.9 112 50.0
CANSAT56G1551 Cannabis sativa HOM05D007607 ORTHO05D009603 1.4e-11 73.6 136 43.4
AUR62002416 Chenopodium quinoa HOM05D007607 ORTHO05D009603 1.4e-11 73.6 93 51.6
Peaxi162Scf00883g00099 Petunia axillaris HOM05D007607 ORTHO05D009603 1.4e-11 73.6 94 59.6
ClCG11G013470 Citrullus lanatus HOM05D007607 ORTHO05D009603 2.4e-11 72.8 139 47.5
Sed0020904 Sechium edule HOM05D007607 ORTHO05D009603 2.4e-11 72.8 82 51.2
arahy.Tifrunner.gnm1.ann1.RJI6AK Arachis hypogaea HOM05D007607 ORTHO05D009603 3.1e-11 72.4 143 45.5
AUR62023773 Chenopodium quinoa HOM05D007607 ORTHO05D009603 5.4e-11 71.6 93 61.3
Nitab4.5_0008331g0020 Nicotiana tabacum HOM05D001883 ORTHO05D002184 2.7e-10 69.3 89 59.6
PGR142G0203 Punica granatum HOM05D007607 ORTHO05D009603 2.7e-10 69.3 137 45.3
BcaC06g34863 Brassica carinata HOM05D007607 ORTHO05D009603 3.5e-10 68.9 102 52.9
BolC7t42778H Brassica oleracea HOM05D007607 ORTHO05D009603 3.5e-10 68.9 102 52.9
CsaV3_5G030090 Cucumis sativus L. HOM05D007607 ORTHO05D009603 4.5e-10 68.6 139 45.3
Nitab4.5_0000575g0080 Nicotiana tabacum HOM05D007607 ORTHO05D009603 5.9e-10 68.2 87 63.2
Prupe.7G267000 Prunus persica HOM05D007607 ORTHO05D009603 5.9e-10 68.2 118 47.5
Solyc12g019550.2 Solanum lycopersicum HOM05D007607 ORTHO05D009603 7.8e-10 67.8 80 63.8
TWI15G0968 Tripterygium wilfordii HOM05D007607 ORTHO05D009603 7.8e-10 67.8 138 45.7
DCAR_005451 Daucus carota HOM05D007607 ORTHO05D009603 1.0e-09 67.4 110 50.9
Atru.chr4.1510 Acer truncatum HOM05D007607 ORTHO05D009603 1.3e-09 67.0 104 52.9
Phvul.003G059800 Phaseolus vulgaris HOM05D007607 ORTHO05D009603 1.3e-09 67.0 143 44.1
BraA06t24849Z Brassica rapa HOM05D007607 ORTHO05D009603 1.7e-09 66.6 75 69.3
Lsat_1_v5_gn_8_9141 Lactuca sativa HOM05D007607 ORTHO05D009603 1.7e-09 66.6 141 36.9
Lalb_Chr16g0384371 Lupinus albus HOM05D007607 ORTHO05D009603 1.7e-09 66.6 96 52.1
C05p20400 Brassica napus HOM05D007607 ORTHO05D009603 2.3e-09 66.2 80 65.0
Sopen12g009810 Solanum pennellii HOM05D007607 ORTHO05D009603 2.3e-09 66.2 80 62.5
MELO3C011848.2 Cucumis melo HOM05D007607 ORTHO05D009603 2.9e-09 65.9 140 45.0
Atru.chr4.1481 Acer truncatum HOM05D007607 ORTHO05D009603 3.8e-09 65.5 77 61.0
BcaC05g26059 Brassica carinata HOM05D007607 ORTHO05D009603 3.8e-09 65.5 80 66.2
BolC5t30734H Brassica oleracea HOM05D007607 ORTHO05D009603 3.8e-09 65.5 80 66.2
Glyma.02G138600 Glycine max HOM05D007607 ORTHO05D009603 3.8e-09 65.5 148 45.3
A06p17530 Brassica napus HOM05D007607 ORTHO05D009603 5.0e-09 65.1 75 68.0
C07p22190 Brassica napus HOM05D007607 ORTHO05D009603 5.0e-09 65.1 102 52.0
Sp1g19030 Schrenkiella parvula HOM05D007607 ORTHO05D009603 6.6e-09 64.7 80 66.2
THA.LOC104813690 Tarenaya hassleriana HOM05D007607 ORTHO05D009603 8.6e-09 64.3 96 53.1
Glyma.07G206400 Glycine max HOM05D007607 ORTHO05D009603 1.1e-08 63.9 152 42.1
Sc13g0006620 Simmondsia chinensis HOM05D007607 ORTHO05D009603 1.1e-08 63.9 96 40.6
ECA233G0487 Erigeron canadensis HOM05D007607 ORTHO05D009603 3.3e-08 62.4 68 54.4
Aqoxy2G03795 Aquilegia oxysepala HOM05D007607 ORTHO05D009603 4.3e-08 62.0 146 41.8
BcaB07g32146 Brassica carinata HOM05D007607 ORTHO05D009603 4.3e-08 62.0 75 64.0
Lj4g0023803 Lotus japonicus HOM05D007607 ORTHO05D009603 4.3e-08 62.0 76 63.2
unitig_22.g5705 Utricularia gibba HOM05D007607 ORTHO05D009603 5.6e-08 61.6 110 47.3
Aa31LG7G5390 Aethionema arabicum HOM05D007607 ORTHO05D009603 7.3e-08 61.2 80 61.2
Psat7g119360 Pisum sativum HOM05D007607 ORTHO05D009603 1.2e-07 60.5 149 44.3
VMungo0251G2348 Vigna mungo HOM05D007607 ORTHO05D009603 1.2e-07 60.5 143 44.8
PGSC0003DMG400029159 Solanum tuberosum HOM05D007607 ORTHO05D009603 1.6e-07 60.1 80 62.5
Os09g0517000 Oryza sativa ssp. japonica HOM05D007607 ORTHO05D009603 2.8e-07 59.3 37 78.4
AL1G34640 Arabidopsis lyrata HOM05D007607 ORTHO05D009603 4.7e-07 58.5 75 65.3
BcaB03g14267 Brassica carinata HOM05D007607 ORTHO05D009603 8.0e-07 57.8 75 61.3
Thhalv10009074m.g Eutrema salsugineum HOM05D007607 ORTHO05D009603 8.0e-07 57.8 75 62.7
HanXRQChr02g0059081 Helianthus annuus HOM05D007607 ORTHO05D009603 1.0e-06 57.4 75 60.0
Zm00001eb318610 Zea mays HOM05D007607 ORTHO05D009603 1.0e-06 57.4 69 60.9
A07p15130 Brassica napus HOM05D007607 ORTHO05D009603 1.4e-06 57.0 75 60.0
CARHR021860 Cardamine hirsuta HOM05D007607 ORTHO05D009603 1.8e-06 56.6 114 47.4
AT1G21500 Arabidopsis thaliana HOM05D007607 ORTHO05D009603 3.0e-06 55.8 109 48.6
Ca_18631_v3 Cicer arietinum L. HOM05D004461 ORTHO05D005543 3.0e-06 55.8 80 43.8
Carub.0001s2092 Capsella rubella HOM05D007607 ORTHO05D009603 8.9e-06 54.3 75 57.3


User provided reference genes

Program Settings