Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037889 Camellia sinensis var. sinensis HOM05D007340 ORTHO05D008979 3.8e-76 289.7 142 100.0
CSS0042730 Camellia sinensis var. sinensis HOM05D007340 ORTHO05D008979 8.8e-65 251.9 132 93.2
CSS0023925 Camellia sinensis var. sinensis HOM05D007340 ORTHO05D008979 6.3e-63 245.7 133 91.0
CSS0002707 Camellia sinensis var. sinensis HOM05D007340 ORTHO05D008979 4.8e-47 193.0 132 76.5
CSS0014652 Camellia sinensis var. sinensis HOM05D007340 ORTHO05D008979 5.9e-45 186.0 133 75.2
Hma1.2p1_0511F.1_g169170 Hydrangea macrophylla HOM05D007340 ORTHO05D008979 1.3e-44 184.9 128 66.4
Hma1.2p1_2025F.1_g311460 Hydrangea macrophylla HOM05D007340 ORTHO05D008979 8.5e-44 182.2 130 64.6
Dinv44465 Davidia involucrata HOM05D007340 ORTHO05D008979 1.8e-41 174.5 119 70.6
Rhsim04G0212000 Rhododendron simsii HOM05D001150 ORTHO05D000998 3.4e-40 170.2 120 70.0
CAN.G522.11 Capsicum annuum HOM05D007340 ORTHO05D008979 1.4e-38 164.9 133 58.6
Peaxi162Scf00095g00723 Petunia axillaris HOM05D006658 ORTHO05D008515 1.4e-38 164.9 133 59.4
Nitab4.5_0000059g0030 Nicotiana tabacum HOM05D006658 ORTHO05D008979 3.1e-38 163.7 133 59.4
PGSC0003DMG400004352 Solanum tuberosum HOM05D007340 ORTHO05D008979 5.4e-38 162.9 133 58.6
Sopen01g032100 Solanum pennellii HOM05D007340 ORTHO05D008979 4.5e-37 159.8 133 57.9
Nitab4.5_0003070g0020 Nicotiana tabacum HOM05D007340 ORTHO05D008979 1.0e-36 158.7 133 58.6
vmacro17996 Vaccinium macrocarpon HOM05D007340 ORTHO05D008979 1.0e-36 158.7 117 66.7
Solyc01g080310.4 Solanum lycopersicum HOM05D007340 ORTHO05D008979 1.3e-36 158.3 133 57.9
Lj4P768T34 Lonicera japonica HOM05D007340 ORTHO05D008979 5.0e-36 156.4 125 59.2
MELO3C006065.2 Cucumis melo HOM05D007340 ORTHO05D008979 5.5e-35 152.9 141 53.9
Haze_00999 Corylus avellana HOM05D007340 ORTHO05D008979 1.6e-34 151.4 135 55.6
Oeu021055.1 Olea europaea HOM05D007340 ORTHO05D008979 1.6e-34 151.4 136 52.9
Migut.G00250 Erythranthe guttata HOM05D007340 ORTHO05D008979 2.1e-34 151.0 138 55.8
CiPaw.01G157600 Carya illinoinensis HOM05D007340 ORTHO05D008979 2.7e-34 150.6 134 56.7
Sed0013632 Sechium edule HOM05D007340 ORTHO05D008979 3.6e-34 150.2 135 53.3
Cc03_g02890 Coffea canephora HOM05D007340 ORTHO05D008979 6.1e-34 149.4 133 53.4
Thecc.04G270900 Theobroma cacao HOM05D007340 ORTHO05D008979 2.3e-33 147.5 139 51.8
Cfa015550 Carpinus fangiana HOM05D007340 ORTHO05D008979 4.0e-33 146.7 134 54.5
ClCG05G001120 Citrullus lanatus HOM05D007340 ORTHO05D008979 4.0e-33 146.7 136 52.9
Duzib151G0496 Durio zibethinus HOM05D007340 ORTHO05D008979 4.0e-33 146.7 139 50.4
arahy.Tifrunner.gnm1.ann1.PE1C4R Arachis hypogaea HOM05D007340 ORTHO05D008979 5.2e-33 146.4 139 51.1
Cpa.g.sc16.57 Carica papaya HOM05D007340 ORTHO05D008979 5.2e-33 146.4 135 54.1
Gorai.006G074200 Gossypium raimondii HOM05D001150 ORTHO05D008979 5.2e-33 146.4 139 49.6
Gohir.D09G059500 Gossypium hirsutum HOM05D001150 ORTHO05D008979 8.8e-33 145.6 139 49.6
Lalb_Chr15g0087231 Lupinus albus HOM05D007340 ORTHO05D008979 2.6e-32 144.1 135 51.9
CsaV3_3G008450 Cucumis sativus L. HOM05D007340 ORTHO05D008979 7.5e-32 142.5 141 51.1
QL06p005970 Quercus lobata HOM05D007340 ORTHO05D008979 7.5e-32 142.5 135 52.6
Prupe.3G113000 Prunus persica HOM05D007340 ORTHO05D008979 1.3e-31 141.7 135 51.1
Gohir.A09G060400 Gossypium hirsutum HOM05D001150 ORTHO05D008979 2.2e-31 141.0 139 48.9
EL10Ac8g18451 Beta vulgaris HOM05D007340 ORTHO05D008979 6.3e-31 139.4 134 48.5
MD02G1277500 Malus domestica HOM05D007340 ORTHO05D008979 1.8e-30 137.9 132 49.2
Ciclev10007051m.g Citrus clementina HOM05D007340 ORTHO05D008979 9.1e-30 135.6 124 50.0
TWI73G0639 Tripterygium wilfordii HOM05D007340 ORTHO05D008979 5.9e-29 132.9 135 48.9
Ca_06378_v3 Cicer arietinum L. HOM05D007340 ORTHO05D008979 1.3e-28 131.7 135 47.4
Atru.chr4.2678 Acer truncatum HOM05D007340 ORTHO05D008979 2.9e-28 130.6 134 47.0
Atru.chr4.2685 Acer truncatum HOM05D007340 ORTHO05D008979 2.9e-28 130.6 134 47.0
Lsat_1_v5_gn_8_10680 Lactuca sativa HOM05D007340 ORTHO05D008979 3.8e-28 130.2 124 48.4
Ca_09841_v3 Cicer arietinum L. HOM05D007340 ORTHO05D008979 6.6e-28 129.4 135 46.7
SalBow2G1987 Salvia bowleyana HOM05D007340 ORTHO05D008979 1.1e-27 128.6 130 47.7
TAR633G1855 Trochodendron aralioides HOM05D007340 ORTHO05D008979 2.5e-27 127.5 112 49.1
Sc19g0004680 Simmondsia chinensis HOM05D007340 ORTHO05D008979 3.3e-27 127.1 111 52.3
Phvul.003G036500 Phaseolus vulgaris HOM05D007340 ORTHO05D008979 7.2e-27 125.9 135 45.9
DCAR_030586 Daucus carota HOM05D007340 ORTHO05D008979 1.6e-26 124.8 133 48.9
PGR065G0011 Punica granatum HOM05D007340 ORTHO05D008979 1.0e-25 122.1 136 46.3
Medtr5g094770 Medicago truncatula HOM05D007340 ORTHO05D008979 2.3e-25 120.9 135 47.4
SHI00355 Sapria himalayana HOM05D007340 ORTHO05D008979 2.3e-25 120.9 135 44.4
FAN12G4271 Fragaria x ananassa HOM05D007340 ORTHO05D008979 3.0e-25 120.6 111 49.5
FvH4_4g14110 Fragaria vesca HOM05D007340 ORTHO05D008979 6.8e-25 119.4 111 48.6
CANSAT78G0497 Cannabis sativa HOM05D007340 ORTHO05D008979 4.4e-24 116.7 115 47.8
AUR62010965 Chenopodium quinoa HOM05D007340 ORTHO05D008979 1.3e-23 115.2 116 46.6
COL.COLO4_13983 Corchorus olitorius HOM05D007340 ORTHO05D008979 3.7e-23 113.6 123 45.5
PSO170G6018 Papaver somniferum HOM05D007340 ORTHO05D008979 6.3e-23 112.8 131 44.3
AUR62021475 Chenopodium quinoa HOM05D007340 ORTHO05D008979 1.4e-22 111.7 128 42.2
RcHm_v2.0_Chr4g0419121 Rosa chinensis HOM05D007340 ORTHO05D008979 1.4e-22 111.7 113 46.9
Gohir.D08G046350 Gossypium hirsutum HOM05D007340 ORTHO05D008979 2.4e-22 110.9 113 46.0
Gorai.004G045600 Gossypium raimondii HOM05D007340 ORTHO05D008979 2.4e-22 110.9 113 46.0
Manes.03G186900 Manihot esculenta HOM05D007340 ORTHO05D008979 7.0e-22 109.4 105 47.6
Carub.0006s1725 Capsella rubella HOM05D007340 ORTHO05D008979 9.2e-22 109.0 133 41.4
Lj5g0026289 Lotus japonicus HOM05D007340 ORTHO05D008979 9.2e-22 109.0 135 43.0
A10p20720 Brassica napus HOM05D007340 ORTHO05D008979 1.2e-21 108.6 133 36.8
BraA10t44135Z Brassica rapa HOM05D007340 ORTHO05D008979 2.0e-21 107.8 133 36.1
Glyma.07G161500 Glycine max HOM05D007340 ORTHO05D008979 7.8e-21 105.9 90 54.4
Sp6g25440 Schrenkiella parvula HOM05D007340 ORTHO05D008979 1.0e-20 105.5 133 37.6
BolC9t58627H Brassica oleracea HOM05D007340 ORTHO05D008979 1.3e-20 105.1 136 36.8
Psat2g009000 Pisum sativum HOM05D007340 ORTHO05D008979 1.3e-20 105.1 137 43.8
AL6G30300 Arabidopsis lyrata HOM05D007340 ORTHO05D008979 2.9e-20 104.0 133 39.8
C09p57580 Brassica napus HOM05D007340 ORTHO05D008979 1.1e-19 102.1 136 36.0
BcaC04g18636 Brassica carinata HOM05D007340 ORTHO05D008979 1.5e-19 101.7 135 35.6
AT5G18950 Arabidopsis thaliana HOM05D007340 ORTHO05D008979 1.9e-19 101.3 133 39.1
BcaB08g36633 Brassica carinata HOM05D007340 ORTHO05D008979 3.3e-19 100.5 135 36.3
Eucgr.C04132 Eucalyptus grandis HOM05D007340 ORTHO05D008979 4.3e-19 100.1 136 41.9
Eucgr.C03952 Eucalyptus grandis HOM05D007340 ORTHO05D008979 5.6e-19 99.8 136 41.2
HanXRQChr17g0539051 Helianthus annuus HOM05D007340 ORTHO05D008979 4.7e-18 96.7 79 55.7
Lsat_1_v5_gn_5_93381 Lactuca sativa HOM05D007340 ORTHO05D008979 1.8e-17 94.7 80 52.5
CARHR194060 Cardamine hirsuta HOM05D007340 ORTHO05D008979 2.3e-17 94.4 134 36.6
THA.LOC104827130 Tarenaya hassleriana HOM05D007340 ORTHO05D008979 2.3e-17 94.4 129 38.8
Lsat_1_v5_gn_4_28380 Lactuca sativa HOM05D007340 ORTHO05D008979 5.2e-17 93.2 96 44.8
Psat7g256640 Pisum sativum HOM05D007340 ORTHO05D008979 5.2e-17 93.2 136 40.4
GSVIVG01017865001 Vitis vinifera HOM05D007340 ORTHO05D008979 1.7e-15 88.2 74 52.7
ECA234G3193 Erigeron canadensis HOM05D005830 ORTHO05D007212 1.4e-14 85.1 88 45.5
VMungo1215G3235 Vigna mungo HOM05D007340 ORTHO05D008979 5.4e-14 83.2 75 53.3
HanXRQChr10g0314401 Helianthus annuus HOM05D007340 ORTHO05D008979 7.8e-13 79.3 78 47.4
TPR.G15743 Trifolium pratense HOM05D007340 ORTHO05D008979 1.0e-12 79.0 130 32.3
TPR.G40710 Trifolium pratense HOM05D007340 ORTHO05D008979 2.3e-12 77.8 68 54.4
TPR.G28181 Trifolium pratense HOM05D007340 ORTHO05D008979 1.9e-11 74.7 86 41.9
Prupe.1G570100 Prunus persica HOM05D007340 ORTHO05D008979 4.3e-11 73.6 87 47.1
ECA234G3464 Erigeron canadensis HOM05D007639 ORTHO05D009509 9.5e-11 72.4 118 33.9
FAN17G2541 Fragaria x ananassa HOM05D007340 ORTHO05D008979 2.8e-10 70.9 84 38.1
Rhsim13G0154100 Rhododendron simsii HOM05D002890 ORTHO05D009847 2.8e-10 70.9 107 34.6
TWI63G0498 Tripterygium wilfordii HOM05D002890 ORTHO05D009847 8.1e-10 69.3 114 30.7
Ah.04g150870 Amaranthus hybridus HOM05D000591 ORTHO05D000579 1.8e-09 68.2 92 35.9
SEGI_22909 Sequoiadendron giganteum HOM05D007340 ORTHO05D008979 5.2e-09 66.6 91 38.5
CSS0001323 Camellia sinensis var. sinensis HOM05D002890 ORTHO05D009847 8.9e-09 65.9 112 29.5
Sed0010805 Sechium edule HOM05D002890 ORTHO05D009847 1.5e-08 65.1 110 30.0
HanXRQChr17g0557061 Helianthus annuus HOM05D007639 ORTHO05D009509 2.6e-08 64.3 105 32.4
Lj4g0000542 Lotus japonicus HOM05D002890 ORTHO05D009847 4.4e-08 63.5 112 31.2
ClCG03G004730 Citrullus lanatus HOM05D002890 ORTHO05D009847 5.8e-08 63.2 112 29.5
arahy.Tifrunner.gnm1.ann1.H4NKJU Arachis hypogaea HOM05D000104 ORTHO05D009920 7.5e-08 62.8 120 28.3
CSS0032654 Camellia sinensis var. sinensis HOM05D007202 ORTHO05D009125 7.5e-08 62.8 108 31.5
CSS0048316 Camellia sinensis var. sinensis HOM05D007202 ORTHO05D009125 1.3e-07 62.0 108 31.5
Cfa000220 Carpinus fangiana HOM05D002890 ORTHO05D005855 1.3e-07 62.0 114 26.3
Haze_20536 Corylus avellana HOM05D002890 ORTHO05D009847 1.3e-07 62.0 114 26.3
Haze_20537 Corylus avellana HOM05D002890 ORTHO05D009847 1.3e-07 62.0 114 26.3
arahy.Tifrunner.gnm1.ann1.JWX42Q Arachis hypogaea HOM05D000104 ORTHO05D009920 1.7e-07 61.6 120 28.3
Ah.04g161150 Amaranthus hybridus HOM05D006218 ORTHO05D007338 2.2e-07 61.2 111 24.3
arahy.Tifrunner.gnm1.ann1.UTK222 Arachis hypogaea HOM05D000104 ORTHO05D009920 2.2e-07 61.2 121 28.1
arahy.Tifrunner.gnm1.ann1.W2W9XI Arachis hypogaea HOM05D000104 ORTHO05D009920 2.2e-07 61.2 121 28.1
CDE05G0100 Ceratophyllum demersum HOM05D007202 ORTHO05D009125 2.9e-07 60.8 120 30.0
SalBow2G2822 Salvia bowleyana HOM05D006819 ORTHO05D008763 2.9e-07 60.8 127 28.3
Hma1.2p1_1014F.1_g247820 Hydrangea macrophylla HOM05D000104 ORTHO05D009920 3.7e-07 60.5 119 26.9
SalBow2G3436 Salvia bowleyana HOM05D006819 ORTHO05D008763 3.7e-07 60.5 125 28.0
Eucgr.D00277 Eucalyptus grandis HOM05D000104 ORTHO05D009920 8.3e-07 59.3 120 27.5
Ca_23477_v3 Cicer arietinum L. HOM05D000104 ORTHO05D009920 1.1e-06 58.9 123 27.6
MELO3C035731.2 Cucumis melo HOM05D002890 ORTHO05D009847 1.1e-06 58.9 112 28.6
Glyma.12G191600 Glycine max HOM05D000104 ORTHO05D009920 1.1e-06 58.9 120 26.7
HanXRQChr03g0080981 Helianthus annuus HOM05D006556 ORTHO05D008146 1.1e-06 58.9 121 28.9
PSO782G4392 Papaver somniferum HOM05D007202 ORTHO05D009125 1.1e-06 58.9 108 26.9
CiPaw.08G120800 Carya illinoinensis HOM05D000162 ORTHO05D000090 1.4e-06 58.5 120 28.3
Lj6C200G4 Lonicera japonica HOM05D006556 ORTHO05D008146 1.4e-06 58.5 102 31.4
Cc09_g01660 Coffea canephora HOM05D002890 ORTHO05D009847 1.9e-06 58.2 98 27.6
Duzib213G0999 Durio zibethinus HOM05D007390 ORTHO05D009114 1.9e-06 58.2 134 26.1
Psat3g158640 Pisum sativum HOM05D000104 ORTHO05D009920 1.9e-06 58.2 123 27.6
AUR62016660 Chenopodium quinoa HOM05D007083 ORTHO05D008801 2.4e-06 57.8 99 30.3
Thecc.01G387700 Theobroma cacao HOM05D000104 ORTHO05D009920 2.4e-06 57.8 120 25.8
TPR.G14140 Trifolium pratense HOM05D007340 ORTHO05D008979 2.4e-06 57.8 79 38.0
MSTRG.1303 Avicennia marina HOM05D007639 ORTHO05D009509 3.2e-06 57.4 109 31.2
CiPaw.02G155800 Carya illinoinensis HOM05D006819 ORTHO05D008763 3.2e-06 57.4 118 26.3
CiPaw.08G119600 Carya illinoinensis HOM05D000162 ORTHO05D000090 3.2e-06 57.4 120 26.7
Lj1g0020796 Lotus japonicus HOM05D000104 ORTHO05D009920 3.2e-06 57.4 121 27.3
Medtr7g044790 Medicago truncatula HOM05D000104 ORTHO05D009920 3.2e-06 57.4 123 27.6
Aqoxy1G00377 Aquilegia oxysepala HOM05D007340 ORTHO05D008979 4.1e-06 57.0 64 39.1
A07p44220 Brassica napus HOM05D006918 ORTHO05D008525 4.1e-06 57.0 121 27.3
BolC6t40313H Brassica oleracea HOM05D006918 ORTHO05D008525 4.1e-06 57.0 121 27.3
MD07G1059400 Malus domestica HOM05D002890 ORTHO05D009847 4.1e-06 57.0 112 28.6
Actinidia01760 Actinidia chinensis HOM05D006819 ORTHO05D008763 5.4e-06 56.6 123 28.5
BraA07t31930Z Brassica rapa HOM05D006918 ORTHO05D008525 5.4e-06 56.6 121 27.3
Lalb_Chr03g0040111 Lupinus albus HOM05D000104 ORTHO05D009920 5.4e-06 56.6 119 26.9
DCAR_016510 Daucus carota HOM05D007383 ORTHO05D009254 7.1e-06 56.2 109 27.5
TAR624G0355 Trochodendron aralioides HOM05D002890 ORTHO05D009847 7.1e-06 56.2 98 27.6
Cc10_g03430 Coffea canephora HOM05D007639 ORTHO05D009509 9.2e-06 55.8 94 33.0
Lj3C848G3 Lonicera japonica HOM05D007202 ORTHO05D009125 9.2e-06 55.8 108 27.8


User provided reference genes

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