Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005105 Camellia sinensis var. sinensis HOM05D010934 ORTHO05D000669 2.5e-119 432.2 229 100.0
CSS0037888 Camellia sinensis var. sinensis HOM05D010934 ORTHO05D000669 2.5e-119 432.2 229 100.0
CSS0039716 Camellia sinensis var. sinensis HOM05D010934 ORTHO05D000669 3.6e-118 428.3 229 99.1
CSS0026970 Camellia sinensis var. sinensis HOM05D010934 ORTHO05D000669 2.6e-116 422.2 229 97.8
CSS0007712 Camellia sinensis var. sinensis HOM05D010934 ORTHO05D000669 6.5e-59 231.5 215 58.6
CSS0042483 Camellia sinensis var. sinensis HOM05D010934 ORTHO05D000669 6.5e-59 231.5 215 58.6
CSS0000180 Camellia sinensis var. sinensis HOM05D010934 ORTHO05D000669 9.4e-58 227.6 214 58.4
CSS0026212 Camellia sinensis var. sinensis HOM05D010934 ORTHO05D000669 4.5e-52 208.8 149 65.8
CSS0009810 Camellia sinensis var. sinensis HOM05D010934 ORTHO05D000669 5.9e-52 208.4 149 65.1
CSS0013208 Camellia sinensis var. sinensis HOM05D010934 ORTHO05D000669 6.4e-38 161.8 126 62.7
FvH4_3g22812 Fragaria vesca HOM05D023520 ORTHO05D025365 1.6e-17 94.0 141 29.8
PGR004G1992 Punica granatum HOM05D000791 ORTHO05D000669 4.7e-17 92.4 224 30.4
RcHm_v2.0_Chr4g0402051 Rosa chinensis HOM05D000791 ORTHO05D000669 4.7e-17 92.4 144 34.0
MBI02_g29975_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 6.2e-17 92.0 173 28.9
MBI16_g34343_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 2.4e-16 90.1 173 30.6
Rhsim03G0202300 Rhododendron simsii HOM05D017301 ORTHO05D000669 2.6e-15 86.7 176 27.3
Rhsim09G0047300 Rhododendron simsii HOM05D000107 ORTHO05D000062 5.8e-15 85.5 149 30.2
FAN10G2090 Fragaria x ananassa HOM05D008705 ORTHO05D000669 1.7e-14 84.0 148 29.7
FAN10G3855 Fragaria x ananassa HOM05D008705 ORTHO05D000669 1.7e-14 84.0 148 29.7
MBI19_g01025_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 2.9e-14 83.2 184 28.3
MBI15_g13723_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 4.9e-14 82.4 167 28.1
PSO384G0881 Papaver somniferum HOM05D017761 ORTHO05D000669 8.4e-14 81.6 153 33.3
MBI12_g43234_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.4e-13 80.9 167 27.5
MBI09_g39165_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 7.1e-13 78.6 148 31.8
MBI07_g22513_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 9.3e-13 78.2 173 27.2
TPR.G36323 Trifolium pratense HOM05D008291 ORTHO05D003568 1.6e-12 77.4 111 30.6
MBI18_g01981_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 2.7e-12 76.6 150 27.3
MBI19_g27593_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 2.7e-12 76.6 153 28.1
PSO210G0630 Papaver somniferum HOM05D030578 ORTHO05D000669 3.5e-12 76.3 154 26.6
PGSC0003DMG400001138 Solanum tuberosum HOM05D008892 ORTHO05D010661 3.5e-12 76.3 157 33.1
vmacro01281 Vaccinium macrocarpon HOM05D017301 ORTHO05D000669 3.5e-12 76.3 104 34.6
RcHm_v2.0_Chr4g0385011 Rosa chinensis HOM05D008705 ORTHO05D000669 7.8e-12 75.1 171 25.7
FAN09G3738 Fragaria x ananassa HOM05D008705 ORTHO05D001863 3.0e-11 73.2 132 29.5
Dinv12412 Davidia involucrata HOM05D010418 ORTHO05D000669 5.1e-11 72.4 148 27.0
FAN20G1055 Fragaria x ananassa HOM05D008705 ORTHO05D001863 5.1e-11 72.4 147 29.3
TWI38G2136 Tripterygium wilfordii HOM05D003120 ORTHO05D000669 6.6e-11 72.0 145 32.4
PGR044G2317 Punica granatum HOM05D001309 ORTHO05D000385 8.7e-11 71.6 139 33.8
Dinv16095 Davidia involucrata HOM05D000791 ORTHO05D000669 1.1e-10 71.2 179 24.6
Dinv24767 Davidia involucrata HOM05D000791 ORTHO05D000669 1.1e-10 71.2 177 26.6
Dinv31455 Davidia involucrata HOM05D000791 ORTHO05D000669 1.1e-10 71.2 177 26.6
MBI08_g19110_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.5e-10 70.9 114 26.3
Dinv01181 Davidia involucrata HOM05D000791 ORTHO05D000669 1.9e-10 70.5 150 26.0
MBI08_g02035_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.9e-10 70.5 180 27.2
QL93p0093_0054 Quercus lobata HOM05D003120 ORTHO05D003568 4.3e-10 69.3 162 27.2
Sopen09g001250 Solanum pennellii HOM05D008291 ORTHO05D000669 4.3e-10 69.3 178 25.3
MBI01_g39588_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.6e-09 67.4 211 24.6
Rhsim01G0156700 Rhododendron simsii HOM05D007798 ORTHO05D009882 1.6e-09 67.4 163 29.4
CANSAT21G2267 Cannabis sativa HOM05D009677 ORTHO05D011883 3.6e-09 66.2 158 23.4
Sopen09g022380 Solanum pennellii HOM05D008291 ORTHO05D000669 1.4e-08 64.3 149 26.2
Ca_17856_v3 Cicer arietinum L. HOM05D008291 ORTHO05D003568 3.1e-08 63.2 150 23.3
TPR.G6754 Trifolium pratense HOM05D008291 ORTHO05D003568 3.1e-08 63.2 154 24.0
FAN17G1365 Fragaria x ananassa HOM05D008705 ORTHO05D000669 4.0e-08 62.8 151 26.5
MD11G1169500 Malus domestica HOM05D008985 ORTHO05D000222 4.0e-08 62.8 107 31.8
Migut.I00328 Erythranthe guttata HOM05D023261 ORTHO05D000222 6.9e-08 62.0 159 27.0
PSO063G4330 Papaver somniferum HOM05D017761 ORTHO05D000669 9.0e-08 61.6 121 29.8
PSO063G5169 Papaver somniferum HOM05D017761 ORTHO05D000669 9.0e-08 61.6 121 29.8
MBI13_g41510_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 2.6e-07 60.1 115 22.6
Rhsim06G0076200 Rhododendron simsii HOM05D000107 ORTHO05D009882 2.6e-07 60.1 176 28.4
FvH4_7g09790 Fragaria vesca HOM05D009879 ORTHO05D009647 3.4e-07 59.7 144 33.3
FAN03G0178 Fragaria x ananassa HOM05D009879 ORTHO05D009647 3.4e-07 59.7 144 33.3
RcHm_v2.0_Chr3g0476041 Rosa chinensis HOM05D008705 ORTHO05D000669 3.4e-07 59.7 73 38.4
Dinv11320 Davidia involucrata HOM05D000791 ORTHO05D000669 5.8e-07 58.9 171 25.1
FAN26G1277 Fragaria x ananassa HOM05D002291 ORTHO05D000222 5.8e-07 58.9 153 26.1
Dinv25294 Davidia involucrata HOM05D010418 ORTHO05D000669 7.6e-07 58.5 115 24.3
Prupe.5G199500 Prunus persica HOM05D008985 ORTHO05D000222 7.6e-07 58.5 188 25.5
Rhsim11G0057000 Rhododendron simsii HOM05D007798 ORTHO05D009882 7.6e-07 58.5 157 26.1
FvH4_1g01701 Fragaria vesca HOM05D002291 ORTHO05D000222 9.9e-07 58.2 153 26.1
FAN06G1112 Fragaria x ananassa HOM05D009879 ORTHO05D009647 9.9e-07 58.2 144 31.2
FAN19G1637 Fragaria x ananassa HOM05D002291 ORTHO05D000222 9.9e-07 58.2 153 26.1
FAN28G2311 Fragaria x ananassa HOM05D002291 ORTHO05D000222 9.9e-07 58.2 153 26.1
MBI10_g21718_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 9.9e-07 58.2 87 28.7
Solyc12g082720.1 Solanum lycopersicum HOM05D008291 ORTHO05D003568 9.9e-07 58.2 177 24.3
MBI19_g26810_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.3e-06 57.8 169 26.0
Manes.08G028050 Manihot esculenta HOM05D009290 ORTHO05D009597 1.3e-06 57.8 144 25.7
Sopen10g007560 Solanum pennellii HOM05D008291 ORTHO05D016169 1.3e-06 57.8 111 25.2
EL10Ac2g03097 Beta vulgaris HOM05D008455 ORTHO05D009597 1.7e-06 57.4 120 26.7
EL10Ac2g03454 Beta vulgaris HOM05D008455 ORTHO05D009597 1.7e-06 57.4 120 26.7
EL10Ac2g03816 Beta vulgaris HOM05D008455 ORTHO05D009597 1.7e-06 57.4 120 26.7
EL10Ac3g06529 Beta vulgaris HOM05D008455 ORTHO05D009597 1.7e-06 57.4 120 26.7
EL10Ac4g08902 Beta vulgaris HOM05D008455 ORTHO05D009597 1.7e-06 57.4 120 26.7
Manes.06G115750 Manihot esculenta HOM05D009290 ORTHO05D009597 1.7e-06 57.4 175 24.0
RcHm_v2.0_Chr1g0346841 Rosa chinensis HOM05D009879 ORTHO05D009647 1.7e-06 57.4 157 30.6
RcHm_v2.0_Chr7g0214031 Rosa chinensis HOM05D008705 ORTHO05D000669 1.7e-06 57.4 107 26.2
FAN23G1656 Fragaria x ananassa HOM05D002291 ORTHO05D000222 2.2e-06 57.0 160 26.2
Lj8A600T21 Lonicera japonica HOM05D008985 ORTHO05D000222 2.2e-06 57.0 150 29.3
RcHm_v2.0_Chr1g0346821 Rosa chinensis HOM05D009879 ORTHO05D009647 2.2e-06 57.0 157 31.8
RcHm_v2.0_Chr2g0106131 Rosa chinensis HOM05D008705 ORTHO05D000669 2.2e-06 57.0 103 31.1
RcHm_v2.0_Chr1g0381191 Rosa chinensis HOM05D008705 ORTHO05D000669 2.9e-06 56.6 107 26.2
RcHm_v2.0_Chr2g0102381 Rosa chinensis HOM05D008705 ORTHO05D000669 2.9e-06 56.6 70 37.1
MBI03_g21547_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 3.8e-06 56.2 183 21.9
EL10Ac3g06519 Beta vulgaris HOM05D008455 ORTHO05D009597 4.9e-06 55.8 120 27.5
FAN01G2912 Fragaria x ananassa HOM05D009879 ORTHO05D009647 4.9e-06 55.8 147 28.6
Manes.12G086248 Manihot esculenta HOM05D009290 ORTHO05D009597 4.9e-06 55.8 175 24.0
MBI14_g16297_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 6.4e-06 55.5 154 26.0
Ah.06g194520 Amaranthus hybridus HOM05D000711 ORTHO05D000545 8.4e-06 55.1 150 26.7
MELO3C034759.2 Cucumis melo HOM05D001963 ORTHO05D001863 8.4e-06 55.1 151 22.5
FAN15G2881 Fragaria x ananassa HOM05D009879 ORTHO05D009647 8.4e-06 55.1 126 29.4


User provided reference genes

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