Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037866 Camellia sinensis var. sinensis HOM05D007357 ORTHO05D009314 2.0e-23 111.7 61 100.0
CSS0020054 Camellia sinensis var. sinensis HOM05D007357 ORTHO05D009314 1.0e-22 109.4 61 98.4
CSS0024010 Camellia sinensis var. sinensis HOM05D007357 ORTHO05D009314 5.0e-22 107.1 61 96.7
Actinidia14748 Actinidia chinensis HOM05D007357 ORTHO05D009314 2.3e-19 98.2 61 86.9
Rhsim07G0138300 Rhododendron simsii HOM05D007357 ORTHO05D009314 8.7e-19 96.3 61 85.2
arahy.Tifrunner.gnm1.ann1.0Q5JCD Arachis hypogaea HOM05D007357 ORTHO05D009314 1.5e-15 85.5 58 79.3
arahy.Tifrunner.gnm1.ann1.JPN6B0 Arachis hypogaea HOM05D007357 ORTHO05D009314 1.5e-15 85.5 58 79.3
Medtr5g026790 Medicago truncatula HOM05D007357 ORTHO05D009314 1.0e-14 82.8 58 74.1
Haze_08057 Corylus avellana HOM05D007357 ORTHO05D009314 1.3e-14 82.4 58 79.3
Lj2g0006468 Lotus japonicus HOM05D007357 ORTHO05D009314 1.3e-14 82.4 58 75.9
Glyma.01G150100 Glycine max HOM05D007357 ORTHO05D009314 1.7e-14 82.0 58 75.9
Cc08_g05250 Coffea canephora HOM05D007357 ORTHO05D009314 5.0e-14 80.5 59 69.5
TPR.G17258 Trifolium pratense HOM05D007357 ORTHO05D009314 6.5e-14 80.1 58 70.7
Psat2g142360 Pisum sativum HOM05D007357 ORTHO05D009314 8.5e-14 79.7 57 70.2
TAR629G3058 Trochodendron aralioides HOM05D007357 ORTHO05D009314 1.1e-13 79.3 58 72.4
Haze_08047 Corylus avellana HOM05D007357 ORTHO05D009314 1.4e-13 79.0 58 75.9
Oeu059314.1 Olea europaea HOM05D007357 ORTHO05D009314 1.4e-13 79.0 59 71.2
Glyma.09G214200 Glycine max HOM05D007357 ORTHO05D009314 1.9e-13 78.6 58 72.4
Phvul.002G128100 Phaseolus vulgaris HOM05D007357 ORTHO05D009314 1.9e-13 78.6 58 72.4
Prupe.5G019800 Prunus persica HOM05D007357 ORTHO05D009314 1.9e-13 78.6 58 69.0
VMungo1215G1709 Vigna mungo HOM05D007357 ORTHO05D009314 1.9e-13 78.6 56 73.2
MD06G1016300 Malus domestica HOM05D007357 ORTHO05D009314 2.5e-13 78.2 58 69.0
FvH4_5g24040 Fragaria vesca HOM05D007357 ORTHO05D009314 3.2e-13 77.8 57 71.9
FAN18G2492 Fragaria x ananassa HOM05D007357 ORTHO05D009314 3.2e-13 77.8 57 71.9
FAN18G4511 Fragaria x ananassa HOM05D007357 ORTHO05D009314 3.2e-13 77.8 57 71.9
RcHm_v2.0_Chr7g0213521 Rosa chinensis HOM05D007357 ORTHO05D009314 3.2e-13 77.8 57 71.9
CiPaw.11G103400 Carya illinoinensis HOM05D007357 ORTHO05D009314 5.5e-13 77.0 58 72.4
MD06G1015900 Malus domestica HOM05D007357 ORTHO05D009314 5.5e-13 77.0 58 67.2
Cfa012604 Carpinus fangiana HOM05D007357 ORTHO05D009314 9.4e-13 76.3 58 72.4
DCAR_008186 Daucus carota HOM05D007357 ORTHO05D009314 9.4e-13 76.3 59 64.4
FAN08G0560 Fragaria x ananassa HOM05D007357 ORTHO05D009314 9.4e-13 76.3 57 70.2
QL02p024644 Quercus lobata HOM05D007357 ORTHO05D009314 9.4e-13 76.3 58 74.1
Lalb_Chr05g0215411 Lupinus albus HOM05D007357 ORTHO05D009314 1.2e-12 75.9 58 69.0
Sc07g0008390 Simmondsia chinensis HOM05D007357 ORTHO05D009314 1.6e-12 75.5 56 67.9
EL10Ac5g11952 Beta vulgaris HOM05D000153 ORTHO05D000118 3.6e-12 74.3 55 67.3
ClCG07G002370 Citrullus lanatus HOM05D007357 ORTHO05D009314 4.6e-12 73.9 58 69.0
CsaV3_3G030320 Cucumis sativus L. HOM05D007357 ORTHO05D009314 4.6e-12 73.9 58 69.0
FAN11G2380 Fragaria x ananassa HOM05D007357 ORTHO05D009314 4.6e-12 73.9 57 66.7
Nitab4.5_0001033g0080 Nicotiana tabacum HOM05D007357 ORTHO05D009314 1.0e-11 72.8 59 62.7
CAN.G1269.3 Capsicum annuum HOM05D007357 ORTHO05D009314 1.4e-11 72.4 55 69.1
Peaxi162Scf00408g00712 Petunia axillaris HOM05D007357 ORTHO05D009314 1.4e-11 72.4 59 62.7
Sopen08g024580 Solanum pennellii HOM05D007357 ORTHO05D009314 1.8e-11 72.0 58 63.8
COL.COLO4_16848 Corchorus olitorius HOM05D007357 ORTHO05D009314 3.0e-11 71.2 58 63.8
FvH4_3g08760 Fragaria vesca HOM05D007357 ORTHO05D009314 3.9e-11 70.9 57 64.9
PGSC0003DMG400030879 Solanum tuberosum HOM05D007357 ORTHO05D009314 3.9e-11 70.9 55 65.5
Eucgr.D02601 Eucalyptus grandis HOM05D007357 ORTHO05D009314 8.8e-11 69.7 57 59.6
Sed0001819 Sechium edule HOM05D007357 ORTHO05D009314 8.8e-11 69.7 58 65.5
MELO3C022754.2 Cucumis melo HOM05D007357 ORTHO05D009314 1.1e-10 69.3 58 63.8
Sabra01G0102000 Salix brachista HOM05D007357 ORTHO05D009314 1.1e-10 69.3 58 58.6
Gohir.A12G203400 Gossypium hirsutum HOM05D007357 ORTHO05D009314 1.5e-10 68.9 56 64.3
Oeu042216.1 Olea europaea HOM05D007357 ORTHO05D009314 1.5e-10 68.9 61 62.3
PSO063G0202 Papaver somniferum HOM05D007357 ORTHO05D009314 1.5e-10 68.9 59 55.9
Ah.07g201200 Amaranthus hybridus HOM05D007357 ORTHO05D009314 2.6e-10 68.2 57 63.2
Migut.A00548 Erythranthe guttata HOM05D007357 ORTHO05D009314 2.6e-10 68.2 61 62.3
Sed0016962 Sechium edule HOM05D007357 ORTHO05D009314 2.6e-10 68.2 57 64.9
Gohir.D12G206000 Gossypium hirsutum HOM05D007357 ORTHO05D009314 3.3e-10 67.8 56 62.5
Gorai.008G220900 Gossypium raimondii HOM05D007357 ORTHO05D009314 3.3e-10 67.8 56 62.5
ECA246G3443 Erigeron canadensis HOM05D007357 ORTHO05D009314 7.4e-10 66.6 57 56.1
Nitab4.5_0001786g0050 Nicotiana tabacum HOM05D007357 ORTHO05D009314 7.4e-10 66.6 59 57.6
Potri.001G132232 Populus trichocarpa HOM05D007357 ORTHO05D009314 9.7e-10 66.2 58 56.9
AUR62027337 Chenopodium quinoa HOM05D007357 ORTHO05D009314 2.2e-09 65.1 59 54.2
AUR62044266 Chenopodium quinoa HOM05D007357 ORTHO05D009314 2.2e-09 65.1 59 54.2
HanXRQChr17g0539311 Helianthus annuus HOM05D007357 ORTHO05D009314 2.2e-09 65.1 56 53.6
TWI34G1422 Tripterygium wilfordii HOM05D007357 ORTHO05D009314 2.2e-09 65.1 58 56.9
TWI34G1682 Tripterygium wilfordii HOM05D007357 ORTHO05D009314 2.2e-09 65.1 58 56.9
Hund11140 Selenicereus undatus HOM05D007357 ORTHO05D009314 2.8e-09 64.7 53 64.2
Manes.17G008100 Manihot esculenta HOM05D007357 ORTHO05D009314 6.3e-09 63.5 58 58.6
Os08g0180400 Oryza sativa ssp. japonica HOM05D007357 ORTHO05D009314 8.2e-09 63.2 61 52.5
CDE12G0114 Ceratophyllum demersum HOM05D007357 ORTHO05D009314 1.1e-08 62.8 59 55.9
Lsat_1_v5_gn_3_28060 Lactuca sativa HOM05D007357 ORTHO05D009314 1.1e-08 62.8 53 54.7
Nn4g25471 Nelumbo nucifera HOM05D007357 ORTHO05D009314 1.8e-08 62.0 53 60.4
ATR0829G081 Amborella trichopoda HOM05D007357 ORTHO05D009314 3.1e-08 61.2 59 50.8
Ciclev10002529m.g Citrus clementina HOM05D007357 ORTHO05D009314 4.1e-08 60.8 58 53.4
HPP92_025510 Vanilla planifolia HOM05D007357 ORTHO05D009314 4.1e-08 60.8 55 56.4
HPP92_025525 Vanilla planifolia HOM05D007357 ORTHO05D009314 4.1e-08 60.8 55 56.4
Os07g0452600 Oryza sativa ssp. japonica HOM05D007357 ORTHO05D009314 9.1e-08 59.7 56 53.6
PGR031G1183 Punica granatum HOM05D007357 ORTHO05D009314 1.5e-07 58.9 50 58.0
AUR62007392 Chenopodium quinoa HOM05D007357 ORTHO05D009314 2.6e-07 58.2 59 50.8
CANSAT21G2249 Cannabis sativa HOM05D007357 ORTHO05D009314 4.5e-07 57.4 58 60.3
unitig_32.g10966 Utricularia gibba HOM05D007357 ORTHO05D009314 2.2e-06 55.1 61 50.8
Zm00001eb096560 Zea mays HOM05D007357 ORTHO05D009314 2.9e-06 54.7 56 50.0
Aqoxy5G03983 Aquilegia oxysepala HOM05D007357 ORTHO05D009314 5.0e-06 53.9 56 46.4
CSS0046502 Camellia sinensis var. sinensis HOM05D007357 ORTHO05D009314 8.5e-06 53.1 29 100.0


User provided reference genes

Program Settings