Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037859 Camellia sinensis var. sinensis HOM05D002989 ORTHO05D003218 5.4e-127 457.6 220 100.0
Rhsim01G0272200 Rhododendron simsii HOM05D002989 ORTHO05D003218 3.1e-90 335.5 182 86.8
GSVIVG01003117001 Vitis vinifera HOM05D002989 ORTHO05D003218 6.9e-90 334.3 202 78.7
Atru.chr5.1517 Acer truncatum HOM05D002989 ORTHO05D003218 5.5e-87 324.7 191 81.2
MD03G1258500 Malus domestica HOM05D002989 ORTHO05D003218 2.7e-86 322.4 194 77.8
Dinv32887 Davidia involucrata HOM05D002989 ORTHO05D003218 3.5e-86 322.0 199 76.9
QL12p042063 Quercus lobata HOM05D002989 ORTHO05D003218 4.6e-86 321.6 195 76.9
Thecc.01G272000 Theobroma cacao HOM05D002989 ORTHO05D003218 7.9e-86 320.9 192 78.6
Potri.005G214650 Populus trichocarpa HOM05D002989 ORTHO05D003218 1.8e-85 319.7 194 77.8
Nn1g02454 Nelumbo nucifera HOM05D002989 ORTHO05D003218 5.1e-85 318.2 196 76.5
Sabra05G0164000 Salix brachista HOM05D002989 ORTHO05D003218 5.1e-85 318.2 213 71.4
MELO3C014325.2 Cucumis melo HOM05D002989 ORTHO05D003218 6.7e-85 317.8 195 75.4
arahy.Tifrunner.gnm1.ann1.V0L3RT Arachis hypogaea HOM05D002989 ORTHO05D003218 2.5e-84 315.8 196 74.5
Peaxi162Scf00230g00019 Petunia axillaris HOM05D002989 ORTHO05D003218 5.6e-84 314.7 189 75.1
CiPaw.08G108900 Carya illinoinensis HOM05D002989 ORTHO05D003218 9.6e-84 313.9 206 74.8
HanXRQChr10g0281961 Helianthus annuus HOM05D002989 ORTHO05D003218 9.6e-84 313.9 189 77.2
CsaV3_2G013890 Cucumis sativus L. HOM05D002989 ORTHO05D003218 1.3e-83 313.5 195 74.9
FvH4_2g23010 Fragaria vesca HOM05D002989 ORTHO05D003218 3.7e-83 312.0 193 77.2
FAN15G0470 Fragaria x ananassa HOM05D002989 ORTHO05D003218 3.7e-83 312.0 193 77.2
FAN27G2040 Fragaria x ananassa HOM05D002989 ORTHO05D003218 3.7e-83 312.0 193 77.2
Duzib211G0299 Durio zibethinus HOM05D002989 ORTHO05D003218 8.1e-83 310.8 190 74.7
TPR.G25694 Trifolium pratense HOM05D002989 ORTHO05D003218 8.1e-83 310.8 197 72.1
arahy.Tifrunner.gnm1.ann1.T1HKRS Arachis hypogaea HOM05D002989 ORTHO05D003218 1.1e-82 310.5 200 73.5
FAN24G2837 Fragaria x ananassa HOM05D002989 ORTHO05D003218 1.1e-82 310.5 193 76.7
FAN20G1777 Fragaria x ananassa HOM05D002989 ORTHO05D003218 1.8e-82 309.7 192 77.1
Manes.05G081600 Manihot esculenta HOM05D002989 ORTHO05D003218 1.8e-82 309.7 193 75.1
Sc17g0001200 Simmondsia chinensis HOM05D002989 ORTHO05D003218 1.8e-82 309.7 198 72.7
Gohir.D08G055500 Gossypium hirsutum HOM05D002989 ORTHO05D003218 3.1e-82 308.9 191 74.9
RcHm_v2.0_Chr6g0290051 Rosa chinensis HOM05D002989 ORTHO05D003218 5.3e-82 308.1 193 77.2
CAN.G380.7 Capsicum annuum HOM05D002989 ORTHO05D003218 9.0e-82 307.4 197 71.6
Lalb_Chr21g0306351 Lupinus albus HOM05D002989 ORTHO05D003218 9.0e-82 307.4 194 73.7
Solyc09g065650.3 Solanum lycopersicum HOM05D002989 ORTHO05D003218 9.0e-82 307.4 197 71.1
Sopen09g027400 Solanum pennellii HOM05D002989 ORTHO05D003218 9.0e-82 307.4 197 71.1
TWI12G0259 Tripterygium wilfordii HOM05D002989 ORTHO05D003218 1.2e-81 307.0 193 74.1
Gohir.A08G045205 Gossypium hirsutum HOM05D002989 ORTHO05D003218 1.5e-81 306.6 191 74.3
Gorai.004G056100 Gossypium raimondii HOM05D002989 ORTHO05D003218 1.5e-81 306.6 191 74.3
Medtr1g071370 Medicago truncatula HOM05D002989 ORTHO05D003218 1.5e-81 306.6 194 71.6
ECA247G3236 Erigeron canadensis HOM05D002989 ORTHO05D003218 2.0e-81 306.2 189 75.7
Lj5g0006345 Lotus japonicus HOM05D002989 ORTHO05D003218 2.6e-81 305.8 195 71.3
Psat6g059080 Pisum sativum HOM05D002989 ORTHO05D003218 4.5e-81 305.1 196 70.4
Sed0003144 Sechium edule HOM05D002989 ORTHO05D003218 1.7e-80 303.1 218 68.8
CANSAT25G2944 Cannabis sativa HOM05D002989 ORTHO05D003218 2.2e-80 302.8 216 68.5
Nitab4.5_0000459g0030 Nicotiana tabacum HOM05D002989 ORTHO05D003218 2.9e-80 302.4 197 71.6
A04p00100 Brassica napus HOM05D002989 ORTHO05D003218 6.5e-80 301.2 196 71.4
BraA04t15730Z Brassica rapa HOM05D002989 ORTHO05D003218 6.5e-80 301.2 196 71.4
Ciclev10018605m.g Citrus clementina HOM05D002989 ORTHO05D003218 8.4e-80 300.8 194 73.7
BcaB02g08065 Brassica carinata HOM05D002989 ORTHO05D003218 1.9e-79 299.7 196 70.9
C04p29910 Brassica napus HOM05D002989 ORTHO05D003218 1.9e-79 299.7 196 70.9
Hund02863 Selenicereus undatus HOM05D002989 ORTHO05D003218 2.5e-79 299.3 201 69.2
Phvul.007G174700 Phaseolus vulgaris HOM05D002989 ORTHO05D003218 3.2e-79 298.9 192 73.4
PSO832G1612 Papaver somniferum HOM05D002989 ORTHO05D003218 4.2e-79 298.5 196 70.4
MSTRG.18266 Avicennia marina HOM05D002989 ORTHO05D003218 7.1e-79 297.7 191 72.8
AL5G46190 Arabidopsis lyrata HOM05D002989 ORTHO05D003218 1.2e-78 297.0 196 70.4
Oeu025764.3 Olea europaea HOM05D002989 ORTHO05D003218 1.2e-78 297.0 195 71.3
AT3G63340 Arabidopsis thaliana HOM05D002989 ORTHO05D003218 2.1e-78 296.2 196 70.4
CARHR291630 Cardamine hirsuta HOM05D002989 ORTHO05D003218 3.5e-78 295.4 193 70.5
Carub.0005s2998 Capsella rubella HOM05D002989 ORTHO05D003218 4.6e-78 295.0 193 69.9
Migut.D00359 Erythranthe guttata HOM05D002989 ORTHO05D003218 4.6e-78 295.0 193 71.0
Cc01_g19030 Coffea canephora HOM05D002989 ORTHO05D003218 3.0e-77 292.4 196 67.9
EL10Ac5g10497 Beta vulgaris HOM05D002989 ORTHO05D003218 3.9e-77 292.0 205 66.8
Lsat_1_v5_gn_9_7440 Lactuca sativa HOM05D002989 ORTHO05D003218 3.9e-77 292.0 189 73.5
COL.COLO4_09194 Corchorus olitorius HOM05D002989 ORTHO05D003218 7.4e-76 287.7 174 78.2
SalBow4G0275 Salvia bowleyana HOM05D002989 ORTHO05D003218 9.6e-76 287.3 189 69.8
Haze_04647 Corylus avellana HOM05D002989 ORTHO05D003218 1.6e-75 286.6 173 78.6
BolC4t24522H Brassica oleracea HOM05D002989 ORTHO05D003218 6.3e-75 284.6 224 62.1
SGA_v2.0_scaffold1G00532 Striga asiatica HOM05D002989 ORTHO05D003218 8.2e-75 284.3 190 68.9
vmacro14890 Vaccinium macrocarpon HOM05D002989 ORTHO05D003218 5.3e-74 281.6 205 72.7
ATR0665G490 Amborella trichopoda HOM05D002989 ORTHO05D003218 3.4e-73 278.9 193 67.4
Os11g0586100 Oryza sativa ssp. japonica HOM05D002989 ORTHO05D003218 5.9e-73 278.1 207 65.2
PGR044G1058 Punica granatum HOM05D002989 ORTHO05D003218 3.8e-72 275.4 174 75.3
Eucgr.K03327 Eucalyptus grandis HOM05D002989 ORTHO05D003218 6.5e-72 274.6 174 76.4
Ca_09731_v3 Cicer arietinum L. HOM05D002989 ORTHO05D003218 3.2e-71 272.3 174 71.3
Sp5g00200 Schrenkiella parvula HOM05D002989 ORTHO05D003218 5.1e-69 265.0 175 70.3
Glyma.02G144500 Glycine max HOM05D002989 ORTHO05D003218 5.7e-68 261.5 174 71.3
unitig_0.g139 Utricularia gibba HOM05D002989 ORTHO05D003218 1.3e-67 260.4 190 65.8
AUR62011976 Chenopodium quinoa HOM05D002989 ORTHO05D003218 2.5e-63 246.1 205 60.0
AUR62032285 Chenopodium quinoa HOM05D002989 ORTHO05D003218 5.5e-63 245.0 205 59.5
CDE05G0153 Ceratophyllum demersum HOM05D002989 ORTHO05D003218 2.1e-62 243.0 203 58.1
Zm00001eb114510 Zea mays HOM05D002989 ORTHO05D003218 3.6e-62 242.3 174 65.5
Zm00001eb114650 Zea mays HOM05D002989 ORTHO05D003218 6.1e-62 241.5 165 67.3
Actinidia24922 Actinidia chinensis HOM05D001150 ORTHO05D003218 5.1e-61 238.4 128 89.8
Aa31LG10G17180 Aethionema arabicum HOM05D002989 ORTHO05D003218 2.8e-59 232.6 207 56.0
Mapoly0019s0132 Marchantia polymorpha HOM05D002989 ORTHO05D003218 9.1e-58 227.6 195 55.9
Pp3c16_17820 Physcomitrium patens HOM05D002989 ORTHO05D003218 4.7e-54 215.3 194 53.6
HPP92_020348 Vanilla planifolia HOM05D002989 ORTHO05D003218 4.7e-54 215.3 174 60.9
SMO238G0016 Selaginella moellendorffii HOM05D002989 ORTHO05D003218 1.0e-53 214.2 189 52.4
Prupe.8G235000 Prunus persica HOM05D002989 ORTHO05D003218 1.4e-53 213.8 194 57.7
TAR365G0943 Trochodendron aralioides HOM05D002989 ORTHO05D003218 4.4e-52 208.8 126 78.6
AagrBONN_evm.TU.Sc2ySwM_117.2433 Anthoceros agrestis HOM05D002989 ORTHO05D003218 3.1e-50 202.6 191 53.4
Zm00001eb114680 Zea mays HOM05D002989 ORTHO05D003218 1.5e-47 193.7 136 66.2
ClCG07G000490 Citrullus lanatus HOM05D002989 ORTHO05D003218 1.9e-47 193.4 138 69.6
Thhalv10005760m.g Eutrema salsugineum HOM05D002989 ORTHO05D003218 4.2e-47 192.2 119 72.3
Zm00001eb114500 Zea mays HOM05D002989 ORTHO05D003218 4.0e-45 185.7 127 68.5
Ah.11g050240 Amaranthus hybridus HOM05D002989 ORTHO05D003218 1.2e-44 184.1 141 63.8
Cfa006196 Carpinus fangiana HOM05D002989 ORTHO05D003218 7.0e-42 174.9 100 82.0
VMungo0720G0909 Vigna mungo HOM05D000002 ORTHO05D000001 2.7e-41 172.9 107 72.9
Lj2C1165G7 Lonicera japonica HOM05D002989 ORTHO05D003218 4.2e-39 165.6 101 80.2
ECA247G3770 Erigeron canadensis HOM05D000006 ORTHO05D000001 7.2e-39 164.9 168 53.6
Cre01.g008150 Chlamydomonas reinhardtii HOM05D002989 ORTHO05D003218 1.6e-33 147.1 198 41.9
CBR_g2972 Chara braunii HOM05D002989 ORTHO05D003218 7.7e-33 144.8 130 51.5
TWI60G1634 Tripterygium wilfordii HOM05D002989 ORTHO05D003218 1.3e-32 144.1 230 35.7
Actinidia24940 Actinidia chinensis HOM05D002989 ORTHO05D003218 1.2e-25 120.9 74 77.0
PRCOL_00004918 Prasinoderma coloniale HOM05D002989 ORTHO05D003218 3.8e-24 115.9 218 36.2
QL05p073824 Quercus lobata HOM05D002989 ORTHO05D003218 3.3e-23 112.8 210 39.0
Nitab4.5_0003775g0030 Nicotiana tabacum HOM05D002989 ORTHO05D003218 3.6e-22 109.4 120 46.7
Peaxi162Scf00732g00137 Petunia axillaris HOM05D002989 ORTHO05D003218 1.3e-19 100.9 166 40.4
AL1G52600 Arabidopsis lyrata HOM05D002989 ORTHO05D003218 7.8e-17 91.7 110 47.3
QL05p073569 Quercus lobata HOM05D002989 ORTHO05D003218 1.7e-08 63.9 53 56.6
Rhsim01G0068300 Rhododendron simsii HOM05D002989 ORTHO05D003218 1.7e-08 63.9 55 52.7
BcaB02g08223 Brassica carinata HOM05D000137 ORTHO05D014737 1.5e-07 60.8 163 31.9
BcaB02g08210 Brassica carinata HOM05D000137 ORTHO05D000382 1.9e-07 60.5 163 31.9
CSS0023156 Camellia sinensis var. sinensis HOM05D002989 ORTHO05D003218 5.6e-07 58.9 52 55.8
BolC5t28986H Brassica oleracea HOM05D000084 ORTHO05D014869 1.6e-06 57.4 165 29.7
Thhalv10018665m.g Eutrema salsugineum HOM05D000084 ORTHO05D004328 1.6e-06 57.4 205 25.4
Ah.01g002320 Amaranthus hybridus HOM05D000137 ORTHO05D000382 2.1e-06 57.0 204 29.4
Carub.0002s2044 Capsella rubella HOM05D000084 ORTHO05D004328 2.1e-06 57.0 205 24.9
CiPaw.13G105200 Carya illinoinensis HOM05D000137 ORTHO05D000382 2.1e-06 57.0 162 30.9
Cfa011385 Carpinus fangiana HOM05D000137 ORTHO05D000382 2.8e-06 56.6 161 29.8
BraA10t42496Z Brassica rapa HOM05D000084 ORTHO05D014869 4.7e-06 55.8 174 31.6
EL10Ac5g11525 Beta vulgaris HOM05D000137 ORTHO05D000503 6.2e-06 55.5 164 29.3
BolC2t12439H Brassica oleracea HOM05D000084 ORTHO05D002966 6.2e-06 55.5 170 31.2
BraA02t09286Z Brassica rapa HOM05D000084 ORTHO05D002966 6.2e-06 55.5 170 31.2
BcaB02g07446 Brassica carinata HOM05D000137 ORTHO05D021629 8.1e-06 55.1 163 29.4


User provided reference genes

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