Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037833 Camellia sinensis var. sinensis HOM05D003626 ORTHO05D004255 4.8e-91 337.8 170 100.0
Dinv35227 Davidia involucrata HOM05D003626 ORTHO05D004255 4.4e-60 235.0 142 83.8
Rhsim03G0188200 Rhododendron simsii HOM05D003626 ORTHO05D004255 1.7e-59 233.0 142 81.7
Dinv28414 Davidia involucrata HOM05D003626 ORTHO05D004255 3.7e-59 231.9 142 84.5
Lj1C1001T6 Lonicera japonica HOM05D003626 ORTHO05D004255 1.4e-58 229.9 142 81.0
vmacro06655 Vaccinium macrocarpon HOM05D003626 ORTHO05D004255 1.2e-57 226.9 142 81.7
GSVIVG01028908001 Vitis vinifera HOM05D003626 ORTHO05D004255 7.7e-57 224.2 142 78.2
Nn6g33408 Nelumbo nucifera HOM05D003626 ORTHO05D004255 1.7e-56 223.0 142 80.3
Hma1.2p1_0227F.1_g095920 Hydrangea macrophylla HOM05D003626 ORTHO05D004255 2.3e-56 222.6 144 79.9
Actinidia25889 Actinidia chinensis HOM05D003626 ORTHO05D000962 1.9e-55 219.5 142 76.8
TAR375G0013 Trochodendron aralioides HOM05D003626 ORTHO05D004255 1.9e-55 219.5 142 78.2
TAR636G1367 Trochodendron aralioides HOM05D003626 ORTHO05D004255 5.6e-55 218.0 142 76.1
Nn1g01542 Nelumbo nucifera HOM05D003626 ORTHO05D004255 7.3e-55 217.6 144 74.3
DCAR_020260 Daucus carota HOM05D003626 ORTHO05D004255 4.7e-54 214.9 142 78.2
EL10Ac3g05599 Beta vulgaris HOM05D003626 ORTHO05D004255 8.0e-54 214.2 140 79.3
TAR629G0048 Trochodendron aralioides HOM05D003626 ORTHO05D004255 1.8e-53 213.0 142 76.1
Cpa.g.sc107.76 Carica papaya HOM05D003626 ORTHO05D004255 3.0e-53 212.2 142 76.1
Ah.07g206910 Amaranthus hybridus HOM05D003626 ORTHO05D004255 1.2e-52 210.3 140 77.9
Aqoxy7G00296 Aquilegia oxysepala HOM05D003626 ORTHO05D004255 1.5e-52 209.9 142 72.5
Ciclev10006582m.g Citrus clementina HOM05D003626 ORTHO05D004255 1.5e-52 209.9 144 73.6
Haze_00014 Corylus avellana HOM05D003626 ORTHO05D004255 4.4e-52 208.4 153 71.2
Prupe.2G297500 Prunus persica HOM05D003626 ORTHO05D004255 4.4e-52 208.4 142 75.4
ATR0680G428 Amborella trichopoda HOM05D003626 ORTHO05D004255 7.5e-52 207.6 142 71.1
COL.COLO4_28044 Corchorus olitorius HOM05D003626 ORTHO05D004255 7.5e-52 207.6 142 73.9
HanXRQChr14g0462361 Helianthus annuus HOM05D003626 ORTHO05D004255 9.8e-52 207.2 142 72.5
Oeu004107.1 Olea europaea HOM05D003626 ORTHO05D004255 2.2e-51 206.1 141 74.5
Duzib084G0771 Durio zibethinus HOM05D003626 ORTHO05D004255 2.9e-51 205.7 142 75.4
Duzib205G1576 Durio zibethinus HOM05D003626 ORTHO05D004255 2.9e-51 205.7 142 74.6
Manes.06G149800 Manihot esculenta HOM05D003626 ORTHO05D004255 2.9e-51 205.7 140 74.3
Gohir.D08G110300 Gossypium hirsutum HOM05D003626 ORTHO05D004255 4.9e-51 204.9 142 73.2
Duzib068G0520 Durio zibethinus HOM05D003626 ORTHO05D004255 1.1e-50 203.8 142 73.2
Gorai.004G117900 Gossypium raimondii HOM05D003626 ORTHO05D004255 1.1e-50 203.8 142 72.5
MD07G1273500 Malus domestica HOM05D003626 ORTHO05D004255 1.1e-50 203.8 142 74.6
TWI14G0197 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 1.1e-50 203.8 142 73.9
DCAR_029574 Daucus carota HOM05D003626 ORTHO05D004255 1.8e-50 203.0 140 73.6
RcHm_v2.0_Chr1g0377821 Rosa chinensis HOM05D003626 ORTHO05D004255 2.4e-50 202.6 142 73.9
FAN03G0953 Fragaria x ananassa HOM05D003626 ORTHO05D004255 3.2e-50 202.2 142 73.9
MD01G1205100 Malus domestica HOM05D003626 ORTHO05D004255 3.2e-50 202.2 142 75.4
Gohir.A08G098700 Gossypium hirsutum HOM05D003626 ORTHO05D004255 4.1e-50 201.8 142 72.5
Thecc.03G180000 Theobroma cacao HOM05D003626 ORTHO05D004255 4.1e-50 201.8 142 72.5
TWI23G0117 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 4.1e-50 201.8 142 73.2
Gohir.A12G256000 Gossypium hirsutum HOM05D003626 ORTHO05D004255 7.0e-50 201.1 140 73.6
Hund04768 Selenicereus undatus HOM05D003626 ORTHO05D004255 7.0e-50 201.1 140 75.0
arahy.Tifrunner.gnm1.ann1.DJI5YQ Arachis hypogaea HOM05D003626 ORTHO05D004255 9.2e-50 200.7 144 71.5
TWI39G1025 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 9.2e-50 200.7 142 72.5
Gohir.D12G257400 Gossypium hirsutum HOM05D003626 ORTHO05D004255 1.6e-49 199.9 140 73.6
Gorai.008G275600 Gossypium raimondii HOM05D003626 ORTHO05D004255 1.6e-49 199.9 140 73.6
PSO478G3353 Papaver somniferum HOM05D003626 ORTHO05D004255 2.0e-49 199.5 144 70.1
Phvul.007G072400 Phaseolus vulgaris HOM05D003626 ORTHO05D004255 2.0e-49 199.5 144 72.9
FAN06G2167 Fragaria x ananassa HOM05D003626 ORTHO05D004255 2.7e-49 199.1 142 72.5
ECA233G2749 Erigeron canadensis HOM05D003626 ORTHO05D004255 3.5e-49 198.7 142 71.8
PSO782G4415 Papaver somniferum HOM05D003626 ORTHO05D004255 3.5e-49 198.7 144 69.4
VMungo0720G1546 Vigna mungo HOM05D003626 ORTHO05D004255 4.6e-49 198.4 144 72.2
FvH4_7g29860 Fragaria vesca HOM05D003626 ORTHO05D004255 7.8e-49 197.6 142 71.8
Glyma.10G233400 Glycine max HOM05D003626 ORTHO05D004255 7.8e-49 197.6 144 72.2
Manes.14G024700 Manihot esculenta HOM05D003626 ORTHO05D004255 7.8e-49 197.6 142 71.1
Lsat_1_v5_gn_9_55160 Lactuca sativa HOM05D003626 ORTHO05D004255 1.3e-48 196.8 144 71.5
Glyma.16G181700 Glycine max HOM05D003626 ORTHO05D004255 1.7e-48 196.4 142 71.8
arahy.Tifrunner.gnm1.ann1.TX8CZR Arachis hypogaea HOM05D003626 ORTHO05D004255 2.3e-48 196.1 144 69.4
CDE02G1538 Ceratophyllum demersum HOM05D003626 ORTHO05D004255 3.9e-48 195.3 142 69.7
Glyma.20G161000 Glycine max HOM05D003626 ORTHO05D004255 8.6e-48 194.1 144 71.5
Lalb_Chr02g0141141 Lupinus albus HOM05D003626 ORTHO05D004255 8.6e-48 194.1 144 70.8
AUR62021157 Chenopodium quinoa HOM05D003626 ORTHO05D004255 1.1e-47 193.7 132 73.5
Atru.chr1.420 Acer truncatum HOM05D003626 ORTHO05D004255 3.3e-47 192.2 142 71.8
Psat6g197120 Pisum sativum HOM05D003626 ORTHO05D004255 3.3e-47 192.2 144 70.1
Nitab4.5_0000080g0130 Nicotiana tabacum HOM05D003626 ORTHO05D004255 4.3e-47 191.8 142 66.9
Migut.F01102 Erythranthe guttata HOM05D003626 ORTHO05D004255 9.5e-47 190.7 135 74.1
Medtr1g100810 Medicago truncatula HOM05D003626 ORTHO05D004255 9.5e-47 190.7 144 68.8
Oeu061653.1 Olea europaea HOM05D003626 ORTHO05D004255 9.5e-47 190.7 142 69.0
Lalb_Chr03g0034731 Lupinus albus HOM05D003626 ORTHO05D004255 1.6e-46 189.9 144 68.8
MSTRG.27103 Avicennia marina HOM05D003626 ORTHO05D004255 2.1e-46 189.5 136 73.5
CsaV3_3G017260 Cucumis sativus L. HOM05D003626 ORTHO05D004255 2.1e-46 189.5 140 69.3
CDE06G1616 Ceratophyllum demersum HOM05D003626 ORTHO05D004255 2.8e-46 189.1 142 66.9
Nitab4.5_0001951g0040 Nicotiana tabacum HOM05D003626 ORTHO05D004255 2.8e-46 189.1 142 66.9
arahy.Tifrunner.gnm1.ann1.26FV7C Arachis hypogaea HOM05D003626 ORTHO05D004255 3.6e-46 188.7 144 66.7
arahy.Tifrunner.gnm1.ann1.7Y9ZSE Arachis hypogaea HOM05D003626 ORTHO05D004255 3.6e-46 188.7 144 66.7
Cc02_g02700 Coffea canephora HOM05D003626 ORTHO05D004255 4.7e-46 188.3 142 69.0
AUR62015951 Chenopodium quinoa HOM05D003626 ORTHO05D004255 6.2e-46 188.0 154 66.2
MELO3C006924.2 Cucumis melo HOM05D003626 ORTHO05D004255 6.2e-46 188.0 140 69.3
CiPaw.05G264100 Carya illinoinensis HOM05D003626 ORTHO05D004255 8.0e-46 187.6 140 70.0
TPR.G26995 Trifolium pratense HOM05D003626 ORTHO05D004255 8.0e-46 187.6 142 69.0
CANSAT21G2257 Cannabis sativa HOM05D003626 ORTHO05D004255 1.0e-45 187.2 142 70.4
CAN.G1175.16 Capsicum annuum HOM05D003626 ORTHO05D004255 1.8e-45 186.4 142 69.0
Potri.015G146300 Populus trichocarpa HOM05D003626 ORTHO05D004255 1.8e-45 186.4 143 66.4
Sc19g0001390 Simmondsia chinensis HOM05D003626 ORTHO05D004255 1.8e-45 186.4 134 73.1
SEGI_20458 Sequoiadendron giganteum HOM05D003626 ORTHO05D004255 5.2e-45 184.9 144 65.3
ECA238G3668 Erigeron canadensis HOM05D003626 ORTHO05D004255 6.8e-45 184.5 134 67.9
PGR042G2663 Punica granatum HOM05D003626 ORTHO05D004255 6.8e-45 184.5 142 68.3
SalBow4G0890 Salvia bowleyana HOM05D003626 ORTHO05D004255 1.2e-44 183.7 134 70.9
MSTRG.82 Avicennia marina HOM05D003626 ORTHO05D004255 1.5e-44 183.3 135 68.9
Nitab4.5_0004439g0040 Nicotiana tabacum HOM05D003626 ORTHO05D004255 1.5e-44 183.3 142 66.9
Lalb_Chr19g0130741 Lupinus albus HOM05D003626 ORTHO05D004255 2.6e-44 182.6 144 66.7
PGSC0003DMG400015791 Solanum tuberosum HOM05D003626 ORTHO05D004255 2.6e-44 182.6 142 67.6
HPP92_001476 Vanilla planifolia HOM05D003626 ORTHO05D004255 2.6e-44 182.6 143 69.2
Solyc03g025440.3 Solanum lycopersicum HOM05D003626 ORTHO05D004255 4.4e-44 181.8 142 67.6
Sopen03g004280 Solanum pennellii HOM05D003626 ORTHO05D004255 4.4e-44 181.8 142 67.6
Phvul.004G113400 Phaseolus vulgaris HOM05D003626 ORTHO05D004255 7.5e-44 181.0 142 64.8
Potri.012G143200 Populus trichocarpa HOM05D003626 ORTHO05D004255 9.8e-44 180.6 142 64.8
Sed0000543 Sechium edule HOM05D003626 ORTHO05D004255 9.8e-44 180.6 140 66.4
Solyc06g036060.4 Solanum lycopersicum HOM05D003626 ORTHO05D004255 2.9e-43 179.1 142 64.1
Eucgr.E00978 Eucalyptus grandis HOM05D003626 ORTHO05D004255 3.7e-43 178.7 144 64.6
Peaxi162Scf00444g00425 Petunia axillaris HOM05D003626 ORTHO05D004255 3.7e-43 178.7 142 65.5
Cfa016262 Carpinus fangiana HOM05D003626 ORTHO05D004255 4.9e-43 178.3 140 67.1
Peaxi162Scf00848g00116 Petunia axillaris HOM05D003626 ORTHO05D004255 8.3e-43 177.6 145 64.1
Ca_10741_v3 Cicer arietinum L. HOM05D003626 ORTHO05D004255 1.9e-42 176.4 133 67.7
Sopen06g011810 Solanum pennellii HOM05D003626 ORTHO05D004255 4.1e-42 175.3 142 64.1
THA.LOC104811971 Tarenaya hassleriana HOM05D003626 ORTHO05D004255 5.4e-42 174.9 134 67.2
THA.LOC104825103 Tarenaya hassleriana HOM05D003626 ORTHO05D004255 5.4e-42 174.9 136 67.6
Eucgr.L00411 Eucalyptus grandis HOM05D003626 ORTHO05D004255 7.0e-42 174.5 142 64.1
Sabra15G0155500 Salix brachista HOM05D003626 ORTHO05D004255 7.0e-42 174.5 143 60.8
TPR.G8172 Trifolium pratense HOM05D003626 ORTHO05D004255 9.2e-42 174.1 144 65.3
Lj2g0008392 Lotus japonicus HOM05D003626 ORTHO05D004255 1.2e-41 173.7 144 63.2
SGA_v2.0_scaffold60G21078 Striga asiatica HOM05D003626 ORTHO05D004255 1.6e-41 173.3 138 66.7
Thhalv10024755m.g Eutrema salsugineum HOM05D003626 ORTHO05D004255 2.0e-41 172.9 136 66.2
BolC7t45931H Brassica oleracea HOM05D003626 ORTHO05D004255 7.8e-41 171.0 146 63.0
Eucgr.A02765 Eucalyptus grandis HOM05D003626 ORTHO05D004255 7.8e-41 171.0 142 63.4
Psat0s4127g0040 Pisum sativum HOM05D003626 ORTHO05D004255 7.8e-41 171.0 144 65.3
Aa31LG3G8800 Aethionema arabicum HOM05D003626 ORTHO05D004255 1.3e-40 170.2 136 64.0
C07p54460 Brassica napus HOM05D003626 ORTHO05D004255 3.0e-40 169.1 143 62.9
Carub.0007s1537 Capsella rubella HOM05D003626 ORTHO05D004255 3.0e-40 169.1 139 60.4
A03p56130 Brassica napus HOM05D003626 ORTHO05D004255 5.0e-40 168.3 143 62.2
BraA03t14686Z Brassica rapa HOM05D003626 ORTHO05D004255 5.0e-40 168.3 143 62.2
PGR142G2556 Punica granatum HOM05D003626 ORTHO05D004255 6.6e-40 167.9 140 62.1
AT4G25610 Arabidopsis thaliana HOM05D003626 ORTHO05D004255 8.6e-40 167.5 136 62.5
BcaC06g32796 Brassica carinata HOM05D003626 ORTHO05D004255 1.1e-39 167.2 140 63.6
Sp7g23640 Schrenkiella parvula HOM05D003626 ORTHO05D004255 1.1e-39 167.2 137 63.5
Nitab4.5_0000084g0130 Nicotiana tabacum HOM05D003626 ORTHO05D004255 1.5e-39 166.8 98 81.6
Lj5g0006318 Lotus japonicus HOM05D003626 ORTHO05D004255 2.5e-39 166.0 142 62.7
AL7G27480 Arabidopsis lyrata HOM05D003626 ORTHO05D004255 4.3e-39 165.2 136 62.5
ClCG05G008170 Citrullus lanatus HOM05D003626 ORTHO05D004255 4.3e-39 165.2 149 60.4
Zm00001eb095880 Zea mays HOM05D003626 ORTHO05D004255 4.3e-39 165.2 141 58.2
Medtr6g053660 Medicago truncatula HOM05D003626 ORTHO05D004255 5.6e-39 164.9 144 61.1
A01p16870 Brassica napus HOM05D003626 ORTHO05D004255 1.2e-38 163.7 143 60.1
C01p21150 Brassica napus HOM05D003626 ORTHO05D004255 2.1e-38 162.9 143 60.1
CARHR233030 Cardamine hirsuta HOM05D003626 ORTHO05D004255 2.1e-38 162.9 136 61.8
Lalb_Chr06g0161221 Lupinus albus HOM05D003626 ORTHO05D004255 1.1e-37 160.6 140 60.7
FAN03G3125 Fragaria x ananassa HOM05D003626 ORTHO05D004255 4.4e-36 155.2 142 62.0
FAN10G0313 Fragaria x ananassa HOM05D003626 ORTHO05D004255 4.4e-36 155.2 142 62.0
FAN10G2476 Fragaria x ananassa HOM05D003626 ORTHO05D004255 4.4e-36 155.2 142 62.0
Os09g0570200 Oryza sativa ssp. japonica HOM05D003626 ORTHO05D004255 5.8e-36 154.8 140 55.0
Sc13g0008850 Simmondsia chinensis HOM05D003626 ORTHO05D004255 5.8e-36 154.8 134 58.2
unitig_22.g5223 Utricularia gibba HOM05D003626 ORTHO05D004255 7.5e-36 154.5 142 59.2
FAN06G1666 Fragaria x ananassa HOM05D003626 ORTHO05D004255 1.3e-35 153.7 142 61.3
VMungo0464G2114 Vigna mungo HOM05D003626 ORTHO05D002946 1.3e-35 153.7 149 55.7
BcaC09g50754 Brassica carinata HOM05D003626 ORTHO05D004255 2.2e-35 152.9 136 59.6
FAN01G0376 Fragaria x ananassa HOM05D003626 ORTHO05D004255 2.2e-35 152.9 142 61.3
unitig_0.g459 Utricularia gibba HOM05D003626 ORTHO05D004255 6.4e-35 151.4 144 62.5
BcaNung03703 Brassica carinata HOM05D003626 ORTHO05D004255 2.4e-34 149.4 132 57.6
SMO347G0135 Selaginella moellendorffii HOM05D003626 ORTHO05D004255 3.2e-34 149.1 142 52.8
Migut.F00325 Erythranthe guttata HOM05D003626 ORTHO05D004255 4.6e-33 145.2 90 80.0
Zm00001eb224460 Zea mays HOM05D003626 ORTHO05D004255 4.6e-33 145.2 126 57.1
HPP92_011473 Vanilla planifolia HOM05D003626 ORTHO05D004255 6.0e-33 144.8 98 76.5
Mapoly0003s0245 Marchantia polymorpha HOM05D003626 ORTHO05D004255 1.5e-31 140.2 142 50.7
SEGI_03018 Sequoiadendron giganteum HOM05D003626 ORTHO05D004255 6.2e-30 134.8 93 69.9
Sed0014313 Sechium edule HOM05D003626 ORTHO05D004255 1.1e-29 134.0 113 62.8
Sabra12G0107600 Salix brachista HOM05D003626 ORTHO05D004255 8.6e-24 114.4 141 48.2
Glyma.09G136202 Glycine max HOM05D003626 ORTHO05D004255 3.6e-22 109.0 73 75.3
Pp3c10_4090 Physcomitrium patens HOM05D003626 ORTHO05D004255 4.9e-19 98.6 138 43.5
Lalb_Chr21g0305131 Lupinus albus HOM05D003626 ORTHO05D004255 2.5e-15 86.3 62 74.2
Pp3c10_4110 Physcomitrium patens HOM05D003626 ORTHO05D004255 5.6e-15 85.1 99 49.5
SMO356G0700 Selaginella moellendorffii HOM05D003626 ORTHO05D004255 8.1e-14 81.3 144 41.7
AagrBONN_evm.TU.Sc2ySwM_344.1743 Anthoceros agrestis HOM05D003626 ORTHO05D004255 1.7e-11 73.6 120 31.7
HPP92_027487 Vanilla planifolia HOM05D003626 ORTHO05D004255 3.9e-08 62.4 59 59.3
HPP92_001484 Vanilla planifolia HOM05D003626 ORTHO05D004255 2.5e-07 59.7 60 55.0
HPP92_028446 Vanilla planifolia HOM05D003626 ORTHO05D004255 5.6e-07 58.5 103 39.8
SEGI_33334 Sequoiadendron giganteum HOM05D003626 ORTHO05D004255 1.3e-06 57.4 39 69.2
CBR_g49744 Chara braunii HOM05D000019 ORTHO05D000002 6.2e-06 55.1 57 50.9


User provided reference genes

Program Settings