Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037823 Camellia sinensis var. sinensis HOM05D000626 ORTHO05D003868 1.2e-129 466.5 231 100.0
CSS0013243 Camellia sinensis var. sinensis HOM05D000626 ORTHO05D003868 6.7e-104 380.9 238 84.5
CSS0002315 Camellia sinensis var. sinensis HOM05D000626 ORTHO05D003868 8.9e-80 300.8 158 94.9
CSS0006874 Camellia sinensis var. sinensis HOM05D000626 ORTHO05D003868 2.3e-75 286.2 232 68.1
Actinidia00502 Actinidia chinensis HOM05D000626 ORTHO05D003868 2.4e-61 239.6 158 74.7
Dinv39947 Davidia involucrata HOM05D000626 ORTHO05D003868 1.7e-59 233.4 158 70.3
QL11p042537 Quercus lobata HOM05D000626 ORTHO05D003868 3.0e-59 232.6 153 74.5
GSVIVG01031917001 Vitis vinifera HOM05D000626 ORTHO05D003868 1.1e-58 230.7 227 55.1
Manes.13G136200 Manihot esculenta HOM05D000626 ORTHO05D003868 1.5e-58 230.3 232 52.6
Cc02_g17860 Coffea canephora HOM05D000626 ORTHO05D003868 1.9e-58 229.9 146 75.3
TAR628G0085 Trochodendron aralioides HOM05D000626 ORTHO05D003868 3.3e-58 229.2 152 71.7
Lj3g0026150 Lotus japonicus HOM05D000626 ORTHO05D003868 5.6e-58 228.4 232 54.3
CiPaw.05G061300 Carya illinoinensis HOM05D000626 ORTHO05D003868 2.1e-57 226.5 226 54.0
Hma1.2p1_0066F.1_g036710 Hydrangea macrophylla HOM05D000626 ORTHO05D003868 2.8e-57 226.1 159 68.6
Cc07_g09070 Coffea canephora HOM05D000626 ORTHO05D003868 3.6e-57 225.7 229 52.8
MD10G1081300 Malus domestica HOM05D000626 ORTHO05D003868 8.1e-57 224.6 228 55.3
Aqoxy5G01696 Aquilegia oxysepala HOM05D000626 ORTHO05D003868 1.1e-56 224.2 149 71.1
Glyma.11G120300 Glycine max HOM05D000626 ORTHO05D003868 1.4e-56 223.8 232 53.0
RcHm_v2.0_Chr6g0262991 Rosa chinensis HOM05D000626 ORTHO05D003868 1.8e-56 223.4 159 70.4
Glyma.12G045400 Glycine max HOM05D000626 ORTHO05D003868 2.3e-56 223.0 232 52.6
HanXRQChr15g0487501 Helianthus annuus HOM05D000626 ORTHO05D003868 2.3e-56 223.0 230 53.5
Thecc.02G122300 Theobroma cacao HOM05D000626 ORTHO05D003868 2.3e-56 223.0 233 52.8
MD05G1070400 Malus domestica HOM05D000626 ORTHO05D003868 3.1e-56 222.6 228 54.8
GSVIVG01019024001 Vitis vinifera HOM05D000626 ORTHO05D003868 3.1e-56 222.6 152 71.1
Actinidia36541 Actinidia chinensis HOM05D000626 ORTHO05D003868 4.0e-56 222.2 158 68.4
Duzib052G0942 Durio zibethinus HOM05D000626 ORTHO05D003868 4.0e-56 222.2 233 52.8
Phvul.011G047300 Phaseolus vulgaris HOM05D000626 ORTHO05D003868 4.0e-56 222.2 232 52.6
FAN20G2380 Fragaria x ananassa HOM05D000626 ORTHO05D003868 5.2e-56 221.9 159 69.8
Prupe.8G102600 Prunus persica HOM05D000626 ORTHO05D003868 6.8e-56 221.5 228 54.4
Nitab4.5_0008989g0040 Nicotiana tabacum HOM05D000626 ORTHO05D003868 8.9e-56 221.1 227 52.0
Psat7g141000 Pisum sativum HOM05D000626 ORTHO05D003868 8.9e-56 221.1 232 52.2
Peaxi162Scf00684g00567 Petunia axillaris HOM05D000626 ORTHO05D003868 1.2e-55 220.7 232 52.6
COL.COLO4_32455 Corchorus olitorius HOM05D000626 ORTHO05D003868 1.5e-55 220.3 233 51.9
Manes.12G098300 Manihot esculenta HOM05D000626 ORTHO05D003868 1.5e-55 220.3 232 50.4
VMungo1127G0953 Vigna mungo HOM05D000626 ORTHO05D003868 1.5e-55 220.3 232 53.9
FvH4_2g08200 Fragaria vesca HOM05D000626 ORTHO05D003868 2.0e-55 219.9 233 53.2
Nitab4.5_0001794g0020 Nicotiana tabacum HOM05D000626 ORTHO05D003868 2.0e-55 219.9 227 51.5
Duzib132G0298 Durio zibethinus HOM05D000626 ORTHO05D003868 2.6e-55 219.5 233 52.4
Medtr4g069240 Medicago truncatula HOM05D000626 ORTHO05D003868 2.6e-55 219.5 226 53.1
TPR.G28529 Trifolium pratense HOM05D000626 ORTHO05D003868 2.6e-55 219.5 232 52.2
vmacro02136 Vaccinium macrocarpon HOM05D000626 ORTHO05D003868 2.6e-55 219.5 162 69.1
Atru.chr3.513 Acer truncatum HOM05D000626 ORTHO05D003868 3.4e-55 219.2 152 67.1
Gorai.013G052700 Gossypium raimondii HOM05D000626 ORTHO05D003868 3.4e-55 219.2 233 51.9
Gohir.D04G159100 Gossypium hirsutum HOM05D000626 ORTHO05D003868 4.4e-55 218.8 233 51.9
Gorai.012G146500 Gossypium raimondii HOM05D000626 ORTHO05D003868 4.4e-55 218.8 233 51.9
ClCG09G017810 Citrullus lanatus HOM05D000626 ORTHO05D003868 5.8e-55 218.4 153 68.0
Gohir.D13G047000 Gossypium hirsutum HOM05D000626 ORTHO05D003868 7.5e-55 218.0 233 51.5
TWI31G0747 Tripterygium wilfordii HOM05D000626 ORTHO05D003868 9.9e-55 217.6 227 52.0
arahy.Tifrunner.gnm1.ann1.GNS53T Arachis hypogaea HOM05D000626 ORTHO05D003868 1.3e-54 217.2 225 53.8
CAN.G322.113 Capsicum annuum HOM05D000626 ORTHO05D003868 1.3e-54 217.2 227 50.7
CDE01G0575 Ceratophyllum demersum HOM05D000626 ORTHO05D003868 1.7e-54 216.9 156 66.7
Gohir.A04G117400 Gossypium hirsutum HOM05D000626 ORTHO05D003868 1.7e-54 216.9 233 51.9
Nitab4.5_0000336g0150 Nicotiana tabacum HOM05D000626 ORTHO05D003868 2.2e-54 216.5 150 70.0
Thecc.01G041600 Theobroma cacao HOM05D000626 ORTHO05D003868 2.9e-54 216.1 232 50.0
TAR376G0372 Trochodendron aralioides HOM05D000626 ORTHO05D003868 2.9e-54 216.1 226 52.7
arahy.Tifrunner.gnm1.ann1.NL7PFA Arachis hypogaea HOM05D000626 ORTHO05D003868 3.7e-54 215.7 225 53.3
Cpa.g.sc158.17 Carica papaya HOM05D000626 ORTHO05D003868 3.7e-54 215.7 226 51.8
CsaV3_2G014400 Cucumis sativus L. HOM05D000626 ORTHO05D003868 3.7e-54 215.7 232 51.7
Gohir.A13G048600 Gossypium hirsutum HOM05D000626 ORTHO05D003868 3.7e-54 215.7 233 51.1
Sed0005165 Sechium edule HOM05D000626 ORTHO05D003868 4.9e-54 215.3 228 51.8
Oeu035116.1 Olea europaea HOM05D000626 ORTHO05D003868 6.4e-54 214.9 230 50.0
Sabra07G0026800 Salix brachista HOM05D000626 ORTHO05D003868 6.4e-54 214.9 153 66.7
SalBow6G3366 Salvia bowleyana HOM05D000626 ORTHO05D003868 6.4e-54 214.9 226 50.4
MELO3C021946.2 Cucumis melo HOM05D000626 ORTHO05D003868 8.3e-54 214.5 232 51.7
Cpa.g.sc62.112 Carica papaya HOM05D000626 ORTHO05D003868 1.1e-53 214.2 141 71.6
Potri.005G127000 Populus trichocarpa HOM05D000626 ORTHO05D003868 1.1e-53 214.2 231 49.4
PSO675G2926 Papaver somniferum HOM05D000626 ORTHO05D003868 1.4e-53 213.8 153 67.3
PSO541G5997 Papaver somniferum HOM05D000626 ORTHO05D003868 1.9e-53 213.4 153 67.3
HPP92_010187 Vanilla planifolia HOM05D000626 ORTHO05D003868 1.9e-53 213.4 228 50.9
Nn5g29507 Nelumbo nucifera HOM05D000626 ORTHO05D003868 2.4e-53 213.0 210 54.8
FAN27G0454 Fragaria x ananassa HOM05D000626 ORTHO05D003868 4.1e-53 212.2 172 64.5
Sed0006655 Sechium edule HOM05D000626 ORTHO05D003868 4.1e-53 212.2 221 51.1
Lsat_1_v5_gn_4_144441 Lactuca sativa HOM05D000626 ORTHO05D003868 5.4e-53 211.8 156 65.4
Potri.007G031000 Populus trichocarpa HOM05D000626 ORTHO05D003868 5.4e-53 211.8 227 50.2
PGR042G1683 Punica granatum HOM05D000626 ORTHO05D003868 5.4e-53 211.8 233 51.5
Ciclev10028484m.g Citrus clementina HOM05D000626 ORTHO05D003868 7.1e-53 211.5 228 51.3
Solyc01g109410.4 Solanum lycopersicum HOM05D000626 ORTHO05D003868 7.1e-53 211.5 218 52.3
SGA_v2.0_scaffold58G20567 Striga asiatica HOM05D000626 ORTHO05D003868 7.1e-53 211.5 230 50.4
FAN15G2364 Fragaria x ananassa HOM05D000626 ORTHO05D003868 1.2e-52 210.7 172 64.0
CSS0014885 Camellia sinensis var. sinensis HOM05D000626 ORTHO05D003868 1.6e-52 210.3 220 50.9
Eucgr.G01893 Eucalyptus grandis HOM05D000626 ORTHO05D003868 1.6e-52 210.3 225 52.9
Oeu032561.1 Olea europaea HOM05D000626 ORTHO05D003868 1.6e-52 210.3 224 51.3
Sopen01g051600 Solanum pennellii HOM05D000626 ORTHO05D003868 1.6e-52 210.3 224 50.4
MSTRG.16792 Avicennia marina HOM05D000626 ORTHO05D003868 2.1e-52 209.9 152 66.4
MSTRG.23557 Avicennia marina HOM05D000626 ORTHO05D003868 2.1e-52 209.9 221 49.8
SalBow5G3169 Salvia bowleyana HOM05D000626 ORTHO05D003868 2.1e-52 209.9 152 64.5
THA.LOC104819216 Tarenaya hassleriana HOM05D000626 ORTHO05D003868 3.5e-52 209.1 227 51.5
unitig_37.g12815 Utricularia gibba HOM05D000626 ORTHO05D003868 3.5e-52 209.1 225 50.7
ECA232G3839 Erigeron canadensis HOM05D000626 ORTHO05D003868 6.0e-52 208.4 226 51.8
THA.LOC104826869 Tarenaya hassleriana HOM05D000626 ORTHO05D003868 7.8e-52 208.0 226 50.9
DCAR_017221 Daucus carota HOM05D000626 ORTHO05D003868 1.0e-51 207.6 232 50.4
Duzib264G0072 Durio zibethinus HOM05D000626 ORTHO05D003868 1.0e-51 207.6 232 49.1
ATR0733G160 Amborella trichopoda HOM05D000626 ORTHO05D003868 1.7e-51 206.8 152 63.2
Lalb_Chr01g0002691 Lupinus albus HOM05D000626 ORTHO05D003868 2.3e-51 206.5 232 49.6
Lj5C200G5 Lonicera japonica HOM05D000626 ORTHO05D003868 3.9e-51 205.7 225 50.7
Prupe.7G148700 Prunus persica HOM05D000626 ORTHO05D003868 3.9e-51 205.7 226 49.1
Migut.H00194 Erythranthe guttata HOM05D000626 ORTHO05D003868 6.6e-51 204.9 227 48.0
TWI09G1554 Tripterygium wilfordii HOM05D000626 ORTHO05D003868 8.6e-51 204.5 227 49.3
Atru.chr5.2949 Acer truncatum HOM05D000626 ORTHO05D003868 1.1e-50 204.1 224 50.0
Thhalv10004242m.g Eutrema salsugineum HOM05D000626 ORTHO05D003868 1.1e-50 204.1 232 49.1
SGA_v2.0_scaffold33G13424 Striga asiatica HOM05D000626 ORTHO05D003868 1.1e-50 204.1 229 48.5
TWI53G0930 Tripterygium wilfordii HOM05D000626 ORTHO05D003868 1.5e-50 203.8 227 49.8
CANSAT01G0918 Cannabis sativa HOM05D000626 ORTHO05D003868 1.9e-50 203.4 152 60.5
Lalb_Chr03g0025801 Lupinus albus HOM05D000626 ORTHO05D003868 2.5e-50 203.0 227 49.3
Carub.0008s2782 Capsella rubella HOM05D000626 ORTHO05D003868 4.3e-50 202.2 226 49.1
Hund06221 Selenicereus undatus HOM05D000626 ORTHO05D003868 7.3e-50 201.4 225 48.9
AT5G66680 Arabidopsis thaliana HOM05D000626 ORTHO05D003868 9.5e-50 201.1 226 48.7
Aqoxy6G01025 Aquilegia oxysepala HOM05D000626 ORTHO05D003868 1.2e-49 200.7 156 64.7
SGA_v2.0_scaffold276G46656 Striga asiatica HOM05D000626 ORTHO05D003868 1.6e-49 200.3 158 60.8
CARHR281040 Cardamine hirsuta HOM05D000626 ORTHO05D003868 2.1e-49 199.9 232 48.3
BcaB04g20111 Brassica carinata HOM05D000626 ORTHO05D003868 2.8e-49 199.5 232 48.3
MD15G1269000 Malus domestica HOM05D000626 ORTHO05D003868 2.8e-49 199.5 226 47.8
Zm00001eb303200 Zea mays HOM05D000626 ORTHO05D003868 2.8e-49 199.5 229 48.0
AL8G44800 Arabidopsis lyrata HOM05D000626 ORTHO05D003868 4.7e-49 198.7 232 47.4
BcaB02g10001 Brassica carinata HOM05D000626 ORTHO05D003868 4.7e-49 198.7 232 47.8
FAN24G1839 Fragaria x ananassa HOM05D000626 ORTHO05D003868 6.2e-49 198.4 272 45.2
Ca_20850_v3 Cicer arietinum L. HOM05D000626 ORTHO05D003868 8.1e-49 198.0 154 63.0
Aa31LG1G15220 Aethionema arabicum HOM05D000626 ORTHO05D003868 1.1e-48 197.6 232 46.6
BcaC06g34731 Brassica carinata HOM05D000626 ORTHO05D003868 1.4e-48 197.2 232 48.3
C07p25140 Brassica napus HOM05D000626 ORTHO05D003868 1.4e-48 197.2 232 48.3
BolC7t43044H Brassica oleracea HOM05D000626 ORTHO05D003868 1.4e-48 197.2 232 48.3
BolC9t54060H Brassica oleracea HOM05D000626 ORTHO05D003868 1.8e-48 196.8 230 48.3
Lj4C195G12 Lonicera japonica HOM05D000626 ORTHO05D003868 2.4e-48 196.4 227 48.0
BcaC04g23148 Brassica carinata HOM05D000626 ORTHO05D003868 4.0e-48 195.7 230 47.8
A09p09850 Brassica napus HOM05D000626 ORTHO05D003868 4.0e-48 195.7 230 48.3
SEGI_04451 Sequoiadendron giganteum HOM05D000626 ORTHO05D003868 4.0e-48 195.7 154 59.1
BraA07t29454Z Brassica rapa HOM05D000626 ORTHO05D003868 5.2e-48 195.3 232 47.8
BraA09t36632Z Brassica rapa HOM05D000626 ORTHO05D003868 6.8e-48 194.9 230 47.8
Manes.15G148600 Manihot esculenta HOM05D000626 ORTHO05D003868 6.8e-48 194.9 158 61.4
C09p11660 Brassica napus HOM05D000626 ORTHO05D003868 8.9e-48 194.5 230 47.4
AUR62011357 Chenopodium quinoa HOM05D000626 ORTHO05D003868 1.5e-47 193.7 153 60.8
Sp2g30020 Schrenkiella parvula HOM05D000626 ORTHO05D003868 1.5e-47 193.7 232 46.6
Sc18g0004660 Simmondsia chinensis HOM05D000626 ORTHO05D003868 1.7e-46 190.3 233 46.8
vmacro23069 Vaccinium macrocarpon HOM05D000626 ORTHO05D003868 3.8e-46 189.1 149 63.8
Haze_02415 Corylus avellana HOM05D000626 ORTHO05D003868 8.4e-46 188.0 153 62.7
Mapoly0103s0006 Marchantia polymorpha HOM05D000626 ORTHO05D003868 5.4e-45 185.3 142 62.7
EL10Ac9g21756 Beta vulgaris HOM05D000626 ORTHO05D003868 7.1e-45 184.9 223 45.7
EL10Ac6g14893 Beta vulgaris HOM05D000626 ORTHO05D003868 9.2e-45 184.5 157 56.7
A07p17280 Brassica napus HOM05D000626 ORTHO05D003868 1.6e-44 183.7 232 46.6
AagrBONN_evm.TU.Sc2ySwM_117.2383 Anthoceros agrestis HOM05D000626 ORTHO05D003868 3.5e-44 182.6 148 58.8
Hund14135 Selenicereus undatus HOM05D000626 ORTHO05D003868 1.3e-43 180.6 145 57.2
Ah.01g019620 Amaranthus hybridus HOM05D000626 ORTHO05D003868 1.7e-43 180.3 170 53.5
Dinv26800 Davidia involucrata HOM05D000626 ORTHO05D003868 5.1e-43 178.7 156 59.6
COL.COLO4_22139 Corchorus olitorius HOM05D000626 ORTHO05D003868 6.6e-43 178.3 232 44.4
Lj2C447T14 Lonicera japonica HOM05D000626 ORTHO05D003868 1.9e-42 176.8 227 46.3
Pp3c24_6930 Physcomitrium patens HOM05D000626 ORTHO05D003868 1.9e-42 176.8 149 57.7
AUR62003200 Chenopodium quinoa HOM05D000626 ORTHO05D003868 7.3e-42 174.9 154 53.2
AUR62008017 Chenopodium quinoa HOM05D000626 ORTHO05D003868 3.6e-41 172.6 233 40.8
SMO358G0537 Selaginella moellendorffii HOM05D000626 ORTHO05D003868 4.0e-40 169.1 130 56.2
CBR_g28880 Chara braunii HOM05D000626 ORTHO05D003868 3.4e-39 166.0 148 50.7
Peaxi162Scf00016g00944 Petunia axillaris HOM05D000626 ORTHO05D003868 5.8e-39 165.2 227 44.9
Ah.03g139660 Amaranthus hybridus HOM05D000626 ORTHO05D003868 1.5e-34 150.6 143 54.5
Duzib147G0490 Durio zibethinus HOM05D000626 ORTHO05D003868 6.2e-33 145.2 219 42.0
Potri.004G157900 Populus trichocarpa HOM05D000626 ORTHO05D003868 3.5e-28 129.4 116 56.9
AUR62016705 Chenopodium quinoa HOM05D000626 ORTHO05D003868 1.3e-27 127.5 153 45.1
Actinidia25417 Actinidia chinensis HOM05D000626 ORTHO05D003868 5.6e-26 122.1 92 62.0
MD12G1035200 Malus domestica HOM05D000626 ORTHO05D003868 3.5e-20 102.8 80 58.8
Nitab4.5_0000199g0010 Nicotiana tabacum HOM05D000626 ORTHO05D003868 1.0e-19 101.3 141 42.6
Cre14.g614100 Chlamydomonas reinhardtii HOM05D000626 ORTHO05D003868 1.1e-18 97.8 120 41.7
HanXRQChr03g0075101 Helianthus annuus HOM05D000626 ORTHO05D003868 4.3e-18 95.9 65 67.7
HanXRQChr06g0170541 Helianthus annuus HOM05D000626 ORTHO05D003868 4.3e-18 95.9 65 67.7
HanXRQChr05g0134001 Helianthus annuus HOM05D000626 ORTHO05D003868 1.6e-17 94.0 62 71.0
QL11p042736 Quercus lobata HOM05D000626 ORTHO05D003868 1.4e-13 80.9 59 67.8
BcaB07g29659 Brassica carinata HOM05D000626 ORTHO05D003868 1.2e-12 77.8 170 35.9
Duzib251G0751 Durio zibethinus HOM05D000626 ORTHO05D003868 7.9e-12 75.1 77 45.5
HPP92_010240 Vanilla planifolia HOM05D000626 ORTHO05D003868 1.0e-11 74.7 51 68.6
Zm00001eb095330 Zea mays HOM05D000626 ORTHO05D003868 1.5e-10 70.9 122 37.7
Cfa019187 Carpinus fangiana HOM05D003289 ORTHO05D034141 1.9e-10 70.5 81 44.4
Potri.009G112922 Populus trichocarpa HOM05D000626 ORTHO05D003868 4.3e-10 69.3 69 56.5
Potri.T125804 Populus trichocarpa HOM05D000626 ORTHO05D003868 4.3e-10 69.3 69 56.5
SGA_v2.0_scaffold31G12912 Striga asiatica HOM05D000626 ORTHO05D003868 5.7e-10 68.9 74 48.6
CSS0032254 Camellia sinensis var. sinensis HOM05D007402 ORTHO05D003673 1.6e-09 67.4 43 79.1
Cpa.g.sc43.144 Carica papaya HOM05D000626 ORTHO05D003868 1.6e-09 67.4 52 59.6
SGA_v2.0_scaffold146G36209 Striga asiatica HOM05D000626 ORTHO05D003868 6.5e-06 55.5 74 40.5


User provided reference genes

Program Settings