Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037788 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 2.8e-230 801.6 405 100.0
CSS0050145 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 5.7e-223 777.3 405 97.8
Actinidia09509 Actinidia chinensis HOM05D000834 ORTHO05D006956 1.6e-196 689.5 401 86.0
Rhsim01G0259900 Rhododendron simsii HOM05D000834 ORTHO05D006956 1.1e-194 683.3 429 80.7
GSVIVG01028438001 Vitis vinifera HOM05D000834 ORTHO05D006956 8.8e-192 673.7 405 82.2
Potri.002G255900 Populus trichocarpa HOM05D000834 ORTHO05D006956 1.3e-190 669.8 405 80.5
Haze_24714 Corylus avellana HOM05D000834 ORTHO05D006956 6.3e-190 667.5 406 82.3
Lj1C74T17 Lonicera japonica HOM05D000834 ORTHO05D006956 4.1e-189 664.8 405 82.0
Manes.13G039100 Manihot esculenta HOM05D000834 ORTHO05D006956 7.0e-189 664.1 405 80.5
Prupe.8G214700 Prunus persica HOM05D000834 ORTHO05D006956 7.0e-189 664.1 405 81.5
Gorai.007G150200 Gossypium raimondii HOM05D000834 ORTHO05D006956 2.0e-188 662.5 406 81.0
Gohir.D11G140000 Gossypium hirsutum HOM05D000834 ORTHO05D006956 2.7e-188 662.1 406 81.3
Manes.12G038400 Manihot esculenta HOM05D000834 ORTHO05D006956 1.0e-187 660.2 405 80.7
Cfa002491 Carpinus fangiana HOM05D000834 ORTHO05D006956 1.3e-187 659.8 406 81.3
Sabra02G0194500 Salix brachista HOM05D000834 ORTHO05D006956 1.7e-187 659.4 405 80.0
CiPaw.03G271600 Carya illinoinensis HOM05D000834 ORTHO05D006956 3.8e-187 658.3 406 81.0
arahy.Tifrunner.gnm1.ann1.WYWU3M Arachis hypogaea HOM05D000834 ORTHO05D006956 1.5e-186 656.4 405 80.2
RcHm_v2.0_Chr6g0286481 Rosa chinensis HOM05D000834 ORTHO05D006956 1.9e-186 656.0 405 80.7
Potri.014G193300 Populus trichocarpa HOM05D000834 ORTHO05D006956 3.2e-186 655.2 405 79.5
arahy.Tifrunner.gnm1.ann1.G250MW Arachis hypogaea HOM05D000834 ORTHO05D006956 5.5e-186 654.4 405 80.0
Oeu052085.1 Olea europaea HOM05D000834 ORTHO05D006956 7.2e-186 654.1 403 81.4
FvH4_2g20370 Fragaria vesca HOM05D000834 ORTHO05D006956 1.6e-185 652.9 405 81.0
Gohir.A11G133900 Gossypium hirsutum HOM05D000834 ORTHO05D006956 2.1e-185 652.5 406 79.8
FAN24G3261 Fragaria x ananassa HOM05D000834 ORTHO05D006956 4.7e-185 651.4 405 80.5
Duzib138G0050 Durio zibethinus HOM05D000834 ORTHO05D006956 1.0e-184 650.2 406 80.5
Cc01_g17740 Coffea canephora HOM05D000834 ORTHO05D006956 1.8e-184 649.4 424 76.9
Thecc.01G249300 Theobroma cacao HOM05D000834 ORTHO05D006956 6.8e-184 647.5 406 78.8
PGR044G1351 Punica granatum HOM05D000834 ORTHO05D006956 8.8e-184 647.1 405 79.8
ClCG06G001380 Citrullus lanatus HOM05D000834 ORTHO05D006956 1.2e-183 646.7 406 79.6
CsaV3_6G007320 Cucumis sativus L. HOM05D000834 ORTHO05D006956 1.5e-183 646.4 407 78.9
Migut.D00483 Erythranthe guttata HOM05D000834 ORTHO05D006956 1.5e-183 646.4 400 80.0
Nn1g03003 Nelumbo nucifera HOM05D000834 ORTHO05D006956 1.5e-183 646.4 397 81.4
TWI12G0869 Tripterygium wilfordii HOM05D000834 ORTHO05D006956 3.4e-183 645.2 405 78.5
MD05G1187700 Malus domestica HOM05D000834 ORTHO05D006956 5.7e-183 644.4 405 78.8
MD10G1175400 Malus domestica HOM05D000834 ORTHO05D006956 7.5e-183 644.0 405 79.0
Glyma.13G127400 Glycine max HOM05D000834 ORTHO05D006956 2.2e-182 642.5 405 78.3
FAN15G3585 Fragaria x ananassa HOM05D000834 ORTHO05D006956 4.8e-182 641.3 398 80.2
TAR362G0351 Trochodendron aralioides HOM05D000834 ORTHO05D006956 4.8e-182 641.3 405 78.8
Lj5g0006902 Lotus japonicus HOM05D000834 ORTHO05D006956 8.3e-182 640.6 405 77.8
Eucgr.K01422 Eucalyptus grandis HOM05D000834 ORTHO05D006956 1.8e-181 639.4 405 79.0
QL09p041638 Quercus lobata HOM05D000834 ORTHO05D006956 1.8e-181 639.4 405 79.3
Atru.chr5.1869 Acer truncatum HOM05D000834 ORTHO05D006956 3.1e-181 638.6 406 78.3
Hund05490 Selenicereus undatus HOM05D000834 ORTHO05D006956 5.4e-181 637.9 405 79.3
MSTRG.18357 Avicennia marina HOM05D000834 ORTHO05D006956 7.0e-181 637.5 404 79.2
PSO832G2974 Papaver somniferum HOM05D000834 ORTHO05D006956 1.2e-180 636.7 405 77.8
TPR.G5902 Trifolium pratense HOM05D000834 ORTHO05D006956 2.0e-180 636.0 405 77.0
Phvul.007G153700 Phaseolus vulgaris HOM05D000834 ORTHO05D006956 2.7e-180 635.6 402 78.1
Lalb_Chr02g0152761 Lupinus albus HOM05D000834 ORTHO05D006956 4.5e-180 634.8 406 78.6
VMungo0720G2048 Vigna mungo HOM05D000834 ORTHO05D006956 4.5e-180 634.8 405 77.0
CANSAT01G0496 Cannabis sativa HOM05D000834 ORTHO05D006956 1.0e-179 633.6 401 76.8
CANSAT01G1591 Cannabis sativa HOM05D000834 ORTHO05D006956 1.0e-179 633.6 401 76.8
SGA_v2.0_scaffold1G00665 Striga asiatica HOM05D000121 ORTHO05D000102 1.3e-179 633.3 412 77.4
Sc05g0002850 Simmondsia chinensis HOM05D000834 ORTHO05D006956 5.0e-179 631.3 401 78.3
PSO764G0197 Papaver somniferum HOM05D000834 ORTHO05D006956 6.5e-179 630.9 405 76.8
Lsat_1_v5_gn_5_181100 Lactuca sativa HOM05D000834 ORTHO05D006956 8.6e-179 630.6 405 78.3
HanXRQChr01g0014941 Helianthus annuus HOM05D000834 ORTHO05D006956 1.1e-178 630.2 405 76.8
Sed0018887 Sechium edule HOM05D000834 ORTHO05D006956 1.5e-178 629.8 406 78.1
CDE09G1390 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 1.9e-178 629.4 393 79.4
ATR0787G052 Amborella trichopoda HOM05D000834 ORTHO05D006956 4.2e-178 628.2 403 78.4
CSS0005533 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 7.2e-178 627.5 452 74.1
Ciclev10020464m.g Citrus clementina HOM05D000834 ORTHO05D006956 7.2e-178 627.5 406 75.6
Medtr1g069455 Medicago truncatula HOM05D000834 ORTHO05D006956 9.5e-178 627.1 405 75.8
vmacro14792 Vaccinium macrocarpon HOM05D000834 ORTHO05D006956 9.5e-178 627.1 557 62.5
Aqoxy5G00122 Aquilegia oxysepala HOM05D000834 ORTHO05D006956 1.6e-177 626.3 403 76.2
COL.COLO4_02902 Corchorus olitorius HOM05D000834 ORTHO05D006956 1.6e-177 626.3 406 77.6
Cpa.g.sc87.39 Carica papaya HOM05D000834 ORTHO05D006956 6.1e-177 624.4 437 73.2
Lalb_Chr06g0170741 Lupinus albus HOM05D000834 ORTHO05D006956 8.0e-177 624.0 406 77.6
MBI07_g22384_MAGBIO Magnolia biondii HOM05D000834 ORTHO05D006956 2.6e-175 619.0 400 78.5
Psat6g062480 Pisum sativum HOM05D000834 ORTHO05D006956 1.7e-174 616.3 405 74.8
Aa31LG8G17350 Aethionema arabicum HOM05D000834 ORTHO05D006956 8.3e-174 614.0 408 74.8
Sopen09g025590 Solanum pennellii HOM05D000834 ORTHO05D006956 9.2e-173 610.5 408 76.0
AUR62025434 Chenopodium quinoa HOM05D000834 ORTHO05D006956 1.2e-172 610.1 403 75.4
THA.LOC104814534 Tarenaya hassleriana HOM05D000834 ORTHO05D006956 1.6e-172 609.8 408 74.3
THA.LOC104820067 Tarenaya hassleriana HOM05D000834 ORTHO05D006956 2.7e-172 609.0 408 75.2
Solyc09g064450.3 Solanum lycopersicum HOM05D000834 ORTHO05D006956 4.5e-172 608.2 408 75.7
MELO3C022394.2 Cucumis melo HOM05D000834 ORTHO05D006956 7.8e-172 607.4 424 72.9
DCAR_004694 Daucus carota HOM05D000834 ORTHO05D006956 5.0e-171 604.7 405 74.1
SalBow4G1359 Salvia bowleyana HOM05D000834 ORTHO05D006956 2.1e-169 599.4 501 63.3
AL3G53320 Arabidopsis lyrata HOM05D000834 ORTHO05D006956 2.8e-169 599.0 408 72.8
AT2G20360 Arabidopsis thaliana HOM05D000834 ORTHO05D006956 6.1e-169 597.8 408 72.8
Carub.0003s3474 Capsella rubella HOM05D000834 ORTHO05D006956 1.0e-168 597.0 408 72.8
Peaxi162Scf00043g00251 Petunia axillaris HOM05D000834 ORTHO05D006956 1.0e-168 597.0 411 74.2
BraA09t41279Z Brassica rapa HOM05D000834 ORTHO05D006956 1.4e-168 596.7 406 73.4
BcaB07g31592 Brassica carinata HOM05D000834 ORTHO05D006956 1.8e-168 596.3 406 73.2
Sp3g33600 Schrenkiella parvula HOM05D000834 ORTHO05D006956 5.2e-168 594.7 406 73.4
unitig_22.g6307 Utricularia gibba HOM05D000834 ORTHO05D006956 1.2e-167 593.6 398 75.9
BcaC07g41219 Brassica carinata HOM05D000834 ORTHO05D006956 3.4e-167 592.0 407 73.0
CARHR110880 Cardamine hirsuta HOM05D000834 ORTHO05D006956 4.4e-167 591.7 408 72.1
BolC8t51785H Brassica oleracea HOM05D000834 ORTHO05D006956 9.8e-167 590.5 406 72.9
BraA07t27827Z Brassica rapa HOM05D000834 ORTHO05D006956 9.8e-167 590.5 406 72.7
BcaC04g22796 Brassica carinata HOM05D000834 ORTHO05D006956 1.3e-166 590.1 406 72.7
A07p00360 Brassica napus HOM05D000834 ORTHO05D000909 1.3e-166 590.1 405 72.6
BolC9t54430H Brassica oleracea HOM05D000834 ORTHO05D006956 1.3e-166 590.1 406 72.7
Ah.08g213640 Amaranthus hybridus HOM05D000834 ORTHO05D006956 2.2e-166 589.3 369 79.4
A09p58940 Brassica napus HOM05D000834 ORTHO05D006956 2.2e-166 589.3 385 75.8
C08p42260 Brassica napus HOM05D000834 ORTHO05D006956 6.4e-166 587.8 396 74.5
BcaB08g34904 Brassica carinata HOM05D000834 ORTHO05D006956 8.3e-166 587.4 407 72.5
Thhalv10002002m.g Eutrema salsugineum HOM05D000834 ORTHO05D006956 8.3e-166 587.4 406 72.2
BcaC06g36723 Brassica carinata HOM05D000834 ORTHO05D006956 2.4e-165 585.9 406 72.2
A09p12840 Brassica napus HOM05D000834 ORTHO05D006956 2.4e-165 585.9 395 73.9
Nitab4.5_0000385g0020 Nicotiana tabacum HOM05D000834 ORTHO05D006956 3.2e-165 585.5 447 68.0
Nitab4.5_0002435g0060 Nicotiana tabacum HOM05D000834 ORTHO05D006956 5.4e-165 584.7 451 67.6
BolC7t40517H Brassica oleracea HOM05D000834 ORTHO05D006956 7.0e-165 584.3 405 72.1
C07p00720 Brassica napus HOM05D000834 ORTHO05D006956 2.7e-164 582.4 405 71.9
C09p15230 Brassica napus HOM05D000834 ORTHO05D006956 2.3e-163 579.3 395 73.2
Os02g0816800 Oryza sativa ssp. japonica HOM05D000834 ORTHO05D006956 1.1e-162 577.0 362 78.5
BraA09t36931Z Brassica rapa HOM05D000834 ORTHO05D006956 1.9e-162 576.2 396 73.0
Ca_09644_v3 Cicer arietinum L. HOM05D000834 ORTHO05D006956 4.3e-162 575.1 422 69.7
HPP92_020769 Vanilla planifolia HOM05D000834 ORTHO05D006956 1.8e-160 569.7 400 69.8
FAN27G0744 Fragaria x ananassa HOM05D000834 ORTHO05D006956 3.1e-160 568.9 356 80.3
SEGI_11456 Sequoiadendron giganteum HOM05D000834 ORTHO05D006956 4.4e-159 565.1 397 69.8
BcaB03g16828 Brassica carinata HOM05D000834 ORTHO05D006956 2.7e-156 555.8 406 69.7
CDE02G1088 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 1.0e-147 527.3 332 79.2
Dinv19263 Davidia involucrata HOM05D000834 ORTHO05D006956 3.3e-146 522.3 292 87.7
AUR62008805 Chenopodium quinoa HOM05D000834 ORTHO05D006956 1.0e-139 500.7 311 78.1
CAN.G536.3 Capsicum annuum HOM05D000834 ORTHO05D006956 8.1e-137 491.1 322 78.9
ECA248G1156 Erigeron canadensis HOM05D000121 ORTHO05D000102 1.4e-133 480.3 307 78.2
SalBow6G5988 Salvia bowleyana HOM05D000834 ORTHO05D006956 2.4e-125 453.0 348 70.4
AagrBONN_evm.TU.Sc2ySwM_368.182 Anthoceros agrestis HOM05D000834 ORTHO05D006956 5.8e-119 431.8 391 55.8
Pp3c14_9070 Physcomitrium patens HOM05D000834 ORTHO05D006956 3.5e-116 422.5 361 55.1
Zm00001eb258880 Zea mays HOM05D000834 ORTHO05D006956 4.3e-114 415.6 260 78.8
Mapoly0051s0097 Marchantia polymorpha HOM05D000834 ORTHO05D006956 5.3e-112 408.7 342 57.6
CBR_g12802 Chara braunii HOM05D000834 ORTHO05D006956 1.7e-110 403.7 340 55.3
Actinidia23703 Actinidia chinensis HOM05D000834 ORTHO05D006956 1.8e-104 383.6 240 83.3
SMO119G0351 Selaginella moellendorffii HOM05D000834 ORTHO05D006956 1.6e-100 370.5 349 53.6
Pp3c1_35920 Physcomitrium patens HOM05D000834 ORTHO05D006956 5.5e-85 318.9 284 52.5
MD15G1374200 Malus domestica HOM05D000834 ORTHO05D006956 4.8e-81 305.8 226 69.0
MCO13G055 Micromonas commoda HOM05D000834 ORTHO05D006956 1.1e-77 294.7 350 45.4
PRCOL_00005891 Prasinoderma coloniale HOM05D000834 ORTHO05D006956 4.5e-71 272.7 358 41.6
SHI26743 Sapria himalayana HOM05D000834 ORTHO05D006956 5.0e-62 242.7 218 61.9
Dinv43064 Davidia involucrata HOM05D000834 ORTHO05D006956 1.5e-61 241.1 233 58.4
Cre10.g434450 Chlamydomonas reinhardtii HOM05D000834 ORTHO05D006956 2.5e-61 240.4 350 40.3
Oeu015439.4 Olea europaea HOM05D000121 ORTHO05D000102 1.6e-60 237.7 285 49.8
SEGI_20632 Sequoiadendron giganteum HOM05D000834 ORTHO05D006956 2.4e-56 223.8 170 69.4
Gohir.A13G077301 Gossypium hirsutum HOM05D000834 ORTHO05D006956 1.4e-43 181.4 99 89.9
Gohir.A12G044900 Gossypium hirsutum HOM05D000751 ORTHO05D000889 2.9e-33 147.1 80 88.8
Gohir.A01G059200 Gossypium hirsutum HOM05D000751 ORTHO05D000889 4.9e-33 146.4 82 87.8
vmacro08769 Vaccinium macrocarpon HOM05D000834 ORTHO05D006956 1.0e-30 138.7 132 59.1
CDE02G0223 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 1.8e-27 127.9 81 77.8
vmacro08768 Vaccinium macrocarpon HOM05D000834 ORTHO05D426596 2.1e-20 104.4 65 75.4
SHI26740 Sapria himalayana HOM05D000834 ORTHO05D006956 6.2e-20 102.8 105 50.5
BcaB02g11316 Brassica carinata HOM05D000834 ORTHO05D000693 5.8e-18 96.3 75 61.3
Lsat_1_v5_gn_8_148040 Lactuca sativa HOM05D000834 ORTHO05D006956 2.8e-12 77.4 53 73.6
Dinv43063 Davidia involucrata HOM05D000834 ORTHO05D183077 1.2e-10 72.0 34 97.1
Lsat_1_v5_gn_7_90061 Lactuca sativa HOM05D000834 ORTHO05D001119 5.4e-08 63.2 41 78.0
CiPaw.05G147100 Carya illinoinensis HOM05D000834 ORTHO05D006956 1.2e-07 62.0 42 71.4


User provided reference genes

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