Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037764 Camellia sinensis var. sinensis HOM05D006307 ORTHO05D008123 7.1e-74 280.8 173 100.0
Dinv34513 Davidia involucrata HOM05D006307 ORTHO05D008123 2.0e-44 183.0 175 71.4
Dinv21870 Davidia involucrata HOM05D006307 ORTHO05D008123 3.2e-42 175.6 181 61.9
Actinidia01018 Actinidia chinensis HOM05D006307 ORTHO05D008123 9.4e-42 174.1 172 60.5
GSVIVG01032869001 Vitis vinifera HOM05D006307 ORTHO05D008123 6.5e-35 151.4 174 63.8
CANSAT56G1764 Cannabis sativa HOM05D006307 ORTHO05D008123 1.4e-34 150.2 194 55.7
Rhsim09G0187400 Rhododendron simsii HOM05D006307 ORTHO05D008123 9.4e-34 147.5 190 61.1
Thecc.10G187500 Theobroma cacao HOM05D006307 ORTHO05D008123 1.6e-33 146.7 176 54.0
TAR633G2235 Trochodendron aralioides HOM05D006307 ORTHO05D008123 6.1e-33 144.8 175 60.0
Duzib114G0239 Durio zibethinus HOM05D006307 ORTHO05D008123 6.7e-32 141.4 176 52.3
Atru.chr12.221 Acer truncatum HOM05D006307 ORTHO05D008123 5.7e-31 138.3 190 53.7
COL.COLO4_19496 Corchorus olitorius HOM05D006307 ORTHO05D008123 1.1e-29 134.0 153 56.9
CiPaw.01G088900 Carya illinoinensis HOM05D006307 ORTHO05D008123 1.4e-29 133.7 175 60.0
vmacro09945 Vaccinium macrocarpon HOM05D006307 ORTHO05D008123 1.8e-29 133.3 191 60.7
Ciclev10033529m.g Citrus clementina HOM05D006307 ORTHO05D008123 3.5e-28 129.0 172 49.4
Manes.07G141400 Manihot esculenta HOM05D006307 ORTHO05D008123 3.5e-28 129.0 175 52.0
Nitab4.5_0000103g0020 Nicotiana tabacum HOM05D006307 ORTHO05D008123 4.5e-28 128.6 173 48.6
PGSC0003DMG400005260 Solanum tuberosum HOM05D006307 ORTHO05D008123 1.3e-27 127.1 169 46.7
Prupe.2G267300 Prunus persica HOM05D006307 ORTHO05D008123 1.7e-27 126.7 181 54.7
Sabra19G0079000 Salix brachista HOM05D006307 ORTHO05D008123 1.7e-27 126.7 172 56.4
CAN.G77.11 Capsicum annuum HOM05D006307 ORTHO05D008123 3.8e-27 125.6 174 46.6
Sopen03g025310 Solanum pennellii HOM05D006307 ORTHO05D008123 3.8e-27 125.6 171 46.8
TWI09G1245 Tripterygium wilfordii HOM05D006307 ORTHO05D008123 8.5e-27 124.4 173 46.2
FAN01G0868 Fragaria x ananassa HOM05D006307 ORTHO05D008123 2.5e-26 122.9 184 54.9
Nn2g10220 Nelumbo nucifera HOM05D006307 ORTHO05D008123 2.5e-26 122.9 164 51.2
Haze_17382 Corylus avellana HOM05D006307 ORTHO05D008123 3.2e-26 122.5 170 60.6
DCAR_018052 Daucus carota HOM05D006307 ORTHO05D009387 1.6e-25 120.2 181 52.5
FvH4_7g26311 Fragaria vesca HOM05D006307 ORTHO05D008123 1.6e-25 120.2 184 54.3
Potri.019G065500 Populus trichocarpa HOM05D006307 ORTHO05D008123 3.6e-25 119.0 173 56.1
RcHm_v2.0_Chr1g0372771 Rosa chinensis HOM05D006307 ORTHO05D008123 4.7e-25 118.6 199 50.3
EL10Ac2g02693 Beta vulgaris HOM05D006307 ORTHO05D008123 3.0e-24 115.9 182 55.5
Cc02_g05030 Coffea canephora HOM05D006307 ORTHO05D008123 4.0e-24 115.5 175 56.6
Cpa.g.sc65.81 Carica papaya HOM05D006307 ORTHO05D008123 8.8e-24 114.4 176 53.4
Cfa001179 Carpinus fangiana HOM05D006307 ORTHO05D008123 1.1e-23 114.0 175 57.1
MD01G1172000 Malus domestica HOM05D006307 ORTHO05D008123 1.5e-23 113.6 204 48.0
Nitab4.5_0001493g0020 Nicotiana tabacum HOM05D006307 ORTHO05D008123 1.5e-23 113.6 172 45.3
Actinidia31756 Actinidia chinensis HOM05D006307 ORTHO05D008123 4.4e-23 112.1 115 59.1
TWI73G0583 Tripterygium wilfordii HOM05D006307 ORTHO05D008123 9.7e-23 110.9 145 50.3
QL08p065320 Quercus lobata HOM05D006307 ORTHO05D008123 3.7e-22 109.0 176 58.0
Oeu001370.1 Olea europaea HOM05D006307 ORTHO05D008123 1.3e-19 100.5 84 63.1
Gohir.D04G010800 Gossypium hirsutum HOM05D006307 ORTHO05D008123 1.7e-19 100.1 175 43.4
Psat2g060080 Pisum sativum HOM05D006307 ORTHO05D008123 2.2e-19 99.8 166 39.8
Gorai.012G012900 Gossypium raimondii HOM05D006307 ORTHO05D008123 5.0e-19 98.6 175 43.4
Glyma.06G140100 Glycine max HOM05D006307 ORTHO05D008123 1.9e-18 96.7 176 43.8
Gohir.A05G404900 Gossypium hirsutum HOM05D006307 ORTHO05D008123 2.5e-18 96.3 175 44.0
Eucgr.G03171 Eucalyptus grandis HOM05D006307 ORTHO05D008123 3.2e-18 95.9 172 40.1
LjContig00155g0000391 Lotus japonicus HOM05D006307 ORTHO05D008123 4.2e-18 95.5 164 47.6
Ah.12g064690 Amaranthus hybridus HOM05D006307 ORTHO05D008123 7.2e-18 94.7 189 47.1
Lj1g0008062 Lotus japonicus HOM05D006307 ORTHO05D008123 1.2e-17 94.0 177 40.7
Glyma.04G224600 Glycine max HOM05D006307 ORTHO05D008123 2.1e-17 93.2 176 47.2
Ca_05544_v3 Cicer arietinum L. HOM05D006307 ORTHO05D008123 2.7e-17 92.8 139 41.7
Lalb_Chr08g0239321 Lupinus albus HOM05D006307 ORTHO05D008123 3.6e-17 92.4 173 39.9
Ah.10g029650 Amaranthus hybridus HOM05D006307 ORTHO05D008123 4.7e-17 92.0 169 48.5
AUR62032552 Chenopodium quinoa HOM05D006307 ORTHO05D008123 4.7e-17 92.0 189 50.8
arahy.Tifrunner.gnm1.ann1.78S8ZN Arachis hypogaea HOM05D006307 ORTHO05D008123 8.0e-17 91.3 180 41.7
arahy.Tifrunner.gnm1.ann1.8Y6D9P Arachis hypogaea HOM05D006307 ORTHO05D008123 1.0e-16 90.9 180 41.7
Glyma.14G187500 Glycine max HOM05D006307 ORTHO05D008123 4.0e-16 89.0 174 38.5
Eucgr.J00096 Eucalyptus grandis HOM05D006307 ORTHO05D008123 2.0e-15 86.7 180 45.6
Phvul.009G041400 Phaseolus vulgaris HOM05D006307 ORTHO05D008123 2.0e-15 86.7 94 51.1
PGR142G3034 Punica granatum HOM05D006307 ORTHO05D008123 5.7e-15 85.1 100 55.0
Lalb_Chr10g0102911 Lupinus albus HOM05D006307 ORTHO05D008123 9.8e-15 84.3 114 46.5
Medtr3g093560 Medicago truncatula HOM05D006307 ORTHO05D008123 4.8e-14 82.0 156 36.5
Glyma.02G220300 Glycine max HOM05D006307 ORTHO05D008123 8.3e-14 81.3 179 41.9
Sc11g0006110 Simmondsia chinensis HOM05D006307 ORTHO05D008123 2.4e-13 79.7 175 44.0
TPR.G13964 Trifolium pratense HOM05D006307 ORTHO05D008123 2.4e-13 79.7 158 37.3
SGA_v2.0_scaffold60G20871 Striga asiatica HOM05D006307 ORTHO05D008123 4.1e-13 79.0 173 42.8
Migut.F00561 Erythranthe guttata HOM05D006307 ORTHO05D008123 5.4e-13 78.6 83 56.6
TPR.G27912 Trifolium pratense HOM05D006307 ORTHO05D008123 7.0e-13 78.2 85 50.6
VMungo1309G1947 Vigna mungo HOM05D006307 ORTHO05D008123 2.0e-12 76.6 95 53.7
Psat5g070080 Pisum sativum HOM05D006307 ORTHO05D008123 2.7e-12 76.3 169 35.5
arahy.Tifrunner.gnm1.ann1.SS94V0 Arachis hypogaea HOM05D006307 ORTHO05D008123 4.5e-12 75.5 167 35.9
arahy.Tifrunner.gnm1.ann1.RI9J7M Arachis hypogaea HOM05D006307 ORTHO05D008123 5.9e-12 75.1 180 33.9
Lsat_1_v5_gn_8_11140 Lactuca sativa HOM05D006307 ORTHO05D008123 1.0e-11 74.3 82 64.6
MSTRG.27248 Avicennia marina HOM05D006307 ORTHO05D008123 1.7e-11 73.6 137 54.7
THA.LOC104824373 Tarenaya hassleriana HOM05D006307 ORTHO05D008123 5.0e-11 72.0 168 39.3
Ca_16847_v3 Cicer arietinum L. HOM05D006307 ORTHO05D008123 1.9e-10 70.1 131 39.7
Cpa.g.sc65.83 Carica papaya HOM05D006307 ORTHO05D008123 2.5e-10 69.7 70 72.9
Medtr5g068530 Medicago truncatula HOM05D006307 ORTHO05D008123 4.2e-10 68.9 153 42.5
Medtr5g068540 Medicago truncatula HOM05D000512 ORTHO05D000861 4.2e-10 68.9 133 42.9
PGR044G1713 Punica granatum HOM05D006307 ORTHO05D008123 4.2e-10 68.9 181 32.0
HanXRQChr14g0441281 Helianthus annuus HOM05D006307 ORTHO05D008123 2.1e-09 66.6 84 48.8
ECA233G0944 Erigeron canadensis HOM05D006307 ORTHO05D008123 1.8e-08 63.5 144 36.8
AL4G38760 Arabidopsis lyrata HOM05D006307 ORTHO05D008123 8.8e-08 61.2 81 37.0
Cc02_g04860 Coffea canephora HOM05D006307 ORTHO05D008123 1.7e-06 57.0 31 83.9
CDE04G1875 Ceratophyllum demersum HOM05D006307 ORTHO05D008123 2.2e-06 56.6 183 30.6
AUR62031669 Chenopodium quinoa HOM05D006307 ORTHO05D008123 2.8e-06 56.2 70 60.0
PSO384G0230 Papaver somniferum HOM05D006307 ORTHO05D008123 3.7e-06 55.8 78 42.3


User provided reference genes

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