Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037751 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 2.0e-80 302.4 153 100.0
CSS0047095 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 7.4e-75 283.9 159 93.1
CSS0037322 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 9.7e-75 283.5 159 93.1
CSS0043236 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 9.7e-75 283.5 159 92.5
CSS0031021 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 1.7e-74 282.7 159 91.8
CSS0007988 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 2.2e-74 282.3 159 92.5
CSS0010224 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 6.3e-74 280.8 159 92.5
CSS0045184 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 8.2e-74 280.4 159 92.5
CSS0032709 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 6.9e-73 277.3 159 91.2
CSS0042528 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D005452 1.1e-38 163.7 87 95.4
Dinv24296 Davidia involucrata HOM05D003697 ORTHO05D005452 2.6e-35 152.5 87 86.2
Actinidia26154 Actinidia chinensis HOM05D003697 ORTHO05D005452 4.9e-34 148.3 87 85.1
Dinv19381 Davidia involucrata HOM05D003697 ORTHO05D005452 4.9e-34 148.3 87 83.9
Hma1.2p1_0217F.1_g092200 Hydrangea macrophylla HOM05D003697 ORTHO05D005452 3.9e-31 138.7 87 78.2
Hma1.2p1_0217F.1_g092210 Hydrangea macrophylla HOM05D003697 ORTHO05D005452 3.9e-31 138.7 87 78.2
MD15G1427500 Malus domestica HOM05D003697 ORTHO05D005452 1.9e-30 136.3 87 77.0
QL02p099301 Quercus lobata HOM05D003697 ORTHO05D005452 1.9e-30 136.3 87 77.0
vmacro19883 Vaccinium macrocarpon HOM05D003697 ORTHO05D005452 4.3e-30 135.2 87 79.3
Cfa005504 Carpinus fangiana HOM05D003697 ORTHO05D005452 9.5e-30 134.0 88 75.0
Haze_01738 Corylus avellana HOM05D003697 ORTHO05D005452 9.5e-30 134.0 88 75.0
Duzib248G1637 Durio zibethinus HOM05D003697 ORTHO05D005452 9.5e-30 134.0 87 74.7
Gohir.A04G121300 Gossypium hirsutum HOM05D003697 ORTHO05D005452 9.5e-30 134.0 87 75.9
Gohir.D04G163800 Gossypium hirsutum HOM05D003697 ORTHO05D005452 9.5e-30 134.0 87 75.9
Lj5C253T9 Lonicera japonica HOM05D003697 ORTHO05D005452 9.5e-30 134.0 87 79.3
Gorai.012G151700 Gossypium raimondii HOM05D003697 ORTHO05D005452 1.2e-29 133.7 87 75.9
Cc02_g22700 Coffea canephora HOM05D003697 ORTHO05D005452 1.6e-29 133.3 87 78.2
MD08G1235900 Malus domestica HOM05D003697 ORTHO05D005452 1.6e-29 133.3 87 75.9
TWI14G0038 Tripterygium wilfordii HOM05D003697 ORTHO05D005452 2.1e-29 132.9 87 74.7
Atru.chr3.1599 Acer truncatum HOM05D003697 ORTHO05D005452 3.6e-29 132.1 87 74.7
Atru.chr3.1607 Acer truncatum HOM05D003697 ORTHO05D005452 3.6e-29 132.1 87 74.7
CiPaw.06G146300 Carya illinoinensis HOM05D003697 ORTHO05D005452 6.2e-29 131.3 85 76.5
COL.COLO4_11778 Corchorus olitorius HOM05D003697 ORTHO05D005452 6.2e-29 131.3 87 71.3
Rhsim05G0119800 Rhododendron simsii HOM05D003697 ORTHO05D005452 6.2e-29 131.3 88 77.3
Prupe.1G572000 Prunus persica HOM05D003697 ORTHO05D005452 1.0e-28 130.6 87 78.2
Thecc.02G088500 Theobroma cacao HOM05D003697 ORTHO05D005452 2.3e-28 129.4 87 71.3
Sed0005890 Sechium edule HOM05D003697 ORTHO05D005452 4.0e-28 128.6 90 70.0
Oeu027795.2 Olea europaea HOM05D003697 ORTHO05D005452 8.9e-28 127.5 87 73.6
CANSAT11G1101 Cannabis sativa HOM05D003697 ORTHO05D005452 1.2e-27 127.1 87 74.7
Peaxi162Scf00011g00526 Petunia axillaris HOM05D003697 ORTHO05D005452 4.4e-27 125.2 87 73.6
CAN.G798.12 Capsicum annuum HOM05D003697 ORTHO05D005452 5.8e-27 124.8 87 73.6
Ciclev10000024m.g Citrus clementina HOM05D003697 ORTHO05D005452 9.8e-27 124.0 88 70.5
CsaV3_3G019150 Cucumis sativus L. HOM05D003697 ORTHO05D005452 9.8e-27 124.0 90 67.8
Potri.003G018900 Populus trichocarpa HOM05D003697 ORTHO05D005452 1.3e-26 123.6 87 70.1
GSVIVG01022867001 Vitis vinifera HOM05D003697 ORTHO05D005452 4.9e-26 121.7 87 72.4
MELO3C019456.2 Cucumis melo HOM05D003697 ORTHO05D005452 6.4e-26 121.3 90 66.7
ClCG05G009570 Citrullus lanatus HOM05D003697 ORTHO05D005452 8.3e-26 120.9 90 65.6
Lsat_1_v5_gn_9_118481 Lactuca sativa HOM05D003697 ORTHO05D005452 8.3e-26 120.9 87 71.3
Sopen01g046450 Solanum pennellii HOM05D003697 ORTHO05D005452 8.3e-26 120.9 87 71.3
Sabra03G0010400 Salix brachista HOM05D003697 ORTHO05D005452 1.4e-25 120.2 87 70.1
Manes.10G121900 Manihot esculenta HOM05D003697 ORTHO05D005452 1.9e-25 119.8 85 68.2
Solyc01g104040.4 Solanum lycopersicum HOM05D003697 ORTHO05D005452 1.9e-25 119.8 87 70.1
TAR381G0967 Trochodendron aralioides HOM05D003697 ORTHO05D005452 4.1e-25 118.6 87 67.8
Gohir.A12G027900 Gossypium hirsutum HOM05D003697 ORTHO05D005452 7.0e-25 117.9 87 67.8
ECA240G1790 Erigeron canadensis HOM05D003697 ORTHO05D005452 9.2e-25 117.5 87 69.0
Nitab4.5_0000816g0140 Nicotiana tabacum HOM05D003697 ORTHO05D005452 9.2e-25 117.5 87 69.0
MSTRG.20304 Avicennia marina HOM05D003697 ORTHO05D005452 1.2e-24 117.1 87 69.0
Gorai.008G028000 Gossypium raimondii HOM05D003697 ORTHO05D005452 1.2e-24 117.1 87 66.7
FvH4_5g28990 Fragaria vesca HOM05D003697 ORTHO05D005452 1.6e-24 116.7 93 66.7
arahy.Tifrunner.gnm1.ann1.IR21Q7 Arachis hypogaea HOM05D003697 ORTHO05D005452 2.0e-24 116.3 87 67.8
FAN04G3000 Fragaria x ananassa HOM05D003697 ORTHO05D005452 2.0e-24 116.3 87 70.1
PGR142G1992 Punica granatum HOM05D003697 ORTHO05D005452 2.7e-24 115.9 87 69.0
RcHm_v2.0_Chr7g0221551 Rosa chinensis HOM05D003697 ORTHO05D005452 2.7e-24 115.9 87 69.0
FAN08G0197 Fragaria x ananassa HOM05D003697 ORTHO05D005452 3.5e-24 115.5 87 69.0
FAN13G2190 Fragaria x ananassa HOM05D003697 ORTHO05D005452 3.5e-24 115.5 87 70.1
FAN18G2119 Fragaria x ananassa HOM05D003697 ORTHO05D005452 4.6e-24 115.2 87 69.0
Nitab4.5_0008466g0010 Nicotiana tabacum HOM05D003697 ORTHO05D005452 6.0e-24 114.8 87 69.0
THA.LOC104801984 Tarenaya hassleriana HOM05D003697 ORTHO05D005452 6.0e-24 114.8 85 65.9
Medtr2g006960 Medicago truncatula HOM05D003697 ORTHO05D005452 7.8e-24 114.4 88 69.3
Eucgr.I02739 Eucalyptus grandis HOM05D003697 ORTHO05D005452 1.0e-23 114.0 87 66.7
Glyma.08G187500 Glycine max HOM05D003697 ORTHO05D005452 1.7e-23 113.2 88 67.0
HanXRQChr09g0249001 Helianthus annuus HOM05D003697 ORTHO05D005452 1.7e-23 113.2 87 66.7
arahy.Tifrunner.gnm1.ann1.6LDV6M Arachis hypogaea HOM05D003697 ORTHO05D005452 2.3e-23 112.8 87 65.5
DCAR_006698 Daucus carota HOM05D003697 ORTHO05D005452 3.0e-23 112.5 90 64.4
Glyma.05G168600 Glycine max HOM05D003697 ORTHO05D005452 3.9e-23 112.1 87 66.7
Lalb_Chr13g0295701 Lupinus albus HOM05D003697 ORTHO05D005452 3.9e-23 112.1 90 64.4
SalBow7G4621 Salvia bowleyana HOM05D003697 ORTHO05D005452 3.9e-23 112.1 87 63.2
SGA_v2.0_scaffold110G31335 Striga asiatica HOM05D003697 ORTHO05D005452 3.9e-23 112.1 87 65.5
Nn1g08409 Nelumbo nucifera HOM05D003697 ORTHO05D005452 5.0e-23 111.7 87 64.4
Ca_00071_v3 Cicer arietinum L. HOM05D003697 ORTHO05D005452 1.1e-22 110.5 88 65.9
Migut.B00820 Erythranthe guttata HOM05D003697 ORTHO05D005452 1.1e-22 110.5 87 65.5
PSO017G4515 Papaver somniferum HOM05D003697 ORTHO05D005452 1.1e-22 110.5 90 62.2
PSO170G2453 Papaver somniferum HOM05D003697 ORTHO05D005452 1.1e-22 110.5 90 62.2
Lj6g0024422 Lotus japonicus HOM05D003697 ORTHO05D005452 4.3e-22 108.6 88 64.8
Psat1g220520 Pisum sativum HOM05D003697 ORTHO05D005452 5.6e-22 108.2 88 64.8
BcaB03g14879 Brassica carinata HOM05D003697 ORTHO05D005452 9.5e-22 107.5 93 58.1
A07p37570 Brassica napus HOM05D003697 ORTHO05D005452 9.5e-22 107.5 93 58.1
BraA07t31318Z Brassica rapa HOM05D003697 ORTHO05D005452 9.5e-22 107.5 93 58.1
Ah.04g162670 Amaranthus hybridus HOM05D003697 ORTHO05D005452 1.2e-21 107.1 91 53.8
BcaC08g46557 Brassica carinata HOM05D003697 ORTHO05D005452 1.2e-21 107.1 93 57.0
BolC6t39589H Brassica oleracea HOM05D003697 ORTHO05D005452 1.2e-21 107.1 93 57.0
AL2G30830 Arabidopsis lyrata HOM05D003697 ORTHO05D005452 1.6e-21 106.7 93 58.1
Glyma.08G127200 Glycine max HOM05D003697 ORTHO05D005452 1.6e-21 106.7 87 62.1
Thhalv10018004m.g Eutrema salsugineum HOM05D003697 ORTHO05D005452 2.1e-21 106.3 93 58.1
C06p45330 Brassica napus HOM05D003697 ORTHO05D005452 2.8e-21 105.9 93 57.0
CARHR064520 Cardamine hirsuta HOM05D003697 ORTHO05D005452 3.6e-21 105.5 92 57.6
Phvul.006G215600 Phaseolus vulgaris HOM05D003697 ORTHO05D005452 8.1e-21 104.4 87 64.4
Sp5g26380 Schrenkiella parvula HOM05D003697 ORTHO05D005452 1.1e-20 104.0 93 55.9
Carub.0002s1810 Capsella rubella HOM05D003697 ORTHO05D005452 1.4e-20 103.6 94 58.5
Sc02g0002740 Simmondsia chinensis HOM05D003697 ORTHO05D005452 1.4e-20 103.6 87 58.6
AUR62037329 Chenopodium quinoa HOM05D003697 ORTHO05D005452 4.0e-20 102.1 84 58.3
AUR62042597 Chenopodium quinoa HOM05D003697 ORTHO05D005452 4.0e-20 102.1 84 58.3
Aa31LG4G9290 Aethionema arabicum HOM05D003697 ORTHO05D005452 5.2e-20 101.7 87 58.6
unitig_749.g14126 Utricularia gibba HOM05D003697 ORTHO05D005452 5.2e-20 101.7 87 60.9
AT1G71220 Arabidopsis thaliana HOM05D003697 ORTHO05D005452 1.5e-19 100.1 93 57.0
SHI16668 Sapria himalayana HOM05D003697 ORTHO05D005452 1.5e-19 100.1 86 57.0
Psat7g198520 Pisum sativum HOM05D003697 ORTHO05D005452 2.0e-19 99.8 88 61.4
Aqoxy5G02635 Aquilegia oxysepala HOM05D003697 ORTHO05D005452 2.6e-19 99.4 90 56.7
VMungo0540G0442 Vigna mungo HOM05D003697 ORTHO05D005452 2.6e-19 99.4 87 60.9
EL10Ac4g08781 Beta vulgaris HOM05D003697 ORTHO05D005452 5.8e-19 98.2 84 53.6
Zm00001eb258320 Zea mays HOM05D003697 ORTHO05D005452 4.1e-17 92.0 85 56.5
ATR1136G197 Amborella trichopoda HOM05D003697 ORTHO05D005452 1.2e-16 90.5 87 54.0
Psat4g083840 Pisum sativum HOM05D003697 ORTHO05D014541 6.0e-16 88.2 81 60.5
TPR.G2085 Trifolium pratense HOM05D003697 ORTHO05D005452 6.0e-16 88.2 88 56.8
HPP92_015204 Vanilla planifolia HOM05D003697 ORTHO05D005452 1.7e-15 86.7 89 51.7
Cpa.g.sc30.4 Carica papaya HOM05D003697 ORTHO05D005452 5.1e-15 85.1 62 69.4
CDE06G0802 Ceratophyllum demersum HOM05D003697 ORTHO05D005452 8.6e-15 84.3 87 51.7
TPR.G34678 Trifolium pratense HOM05D003697 ORTHO05D014541 8.9e-12 74.3 57 66.7
SEGI_03237 Sequoiadendron giganteum HOM05D003697 ORTHO05D005452 5.8e-11 71.6 72 50.0
Psat7g199600 Pisum sativum HOM05D003697 ORTHO05D023078 2.2e-10 69.7 66 57.6
Psat5g083120 Pisum sativum HOM05D003697 ORTHO05D002190 8.4e-10 67.8 54 64.8


User provided reference genes

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