Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037728 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 2.6e-186 655.2 321 100.0
CSS0003524 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 6.4e-169 597.4 363 84.6
Lj3C736T6 Lonicera japonica HOM05D004259 ORTHO05D005014 9.9e-146 520.4 351 73.2
Atru.chr8.1940 Acer truncatum HOM05D004259 ORTHO05D005014 1.4e-139 500.0 364 68.4
Ciclev10012027m.g Citrus clementina HOM05D004259 ORTHO05D005014 1.0e-134 483.8 366 66.1
Sed0023883 Sechium edule HOM05D004259 ORTHO05D005014 1.3e-134 483.4 361 65.7
Duzib128G0657 Durio zibethinus HOM05D004259 ORTHO05D005014 1.7e-134 483.0 363 65.8
Migut.N02703 Erythranthe guttata HOM05D004259 ORTHO05D005014 3.0e-134 482.3 364 66.5
Potri.003G094800 Populus trichocarpa HOM05D004259 ORTHO05D005014 8.7e-134 480.7 364 67.9
TAR376G0692 Trochodendron aralioides HOM05D004259 ORTHO05D005014 1.1e-133 480.3 365 66.3
CiPaw.15G061500 Carya illinoinensis HOM05D004259 ORTHO05D005014 2.5e-133 479.2 356 66.6
Cfa018528 Carpinus fangiana HOM05D004259 ORTHO05D005014 3.3e-133 478.8 358 67.6
Lsat_1_v5_gn_1_20280 Lactuca sativa HOM05D004259 ORTHO05D005014 7.3e-133 477.6 361 65.7
Oeu018211.1 Olea europaea HOM05D004259 ORTHO05D005014 1.3e-132 476.9 378 65.1
CsaV3_2G028020 Cucumis sativus L. HOM05D004259 ORTHO05D005014 1.6e-132 476.5 360 64.7
Manes.08G078200 Manihot esculenta HOM05D004259 ORTHO05D005014 2.1e-132 476.1 364 65.1
Cpa.g.sc973.4 Carica papaya HOM05D004259 ORTHO05D005014 2.8e-132 475.7 366 65.0
MELO3C010882.2 Cucumis melo HOM05D004259 ORTHO05D005014 3.6e-132 475.3 360 64.7
HanXRQChr04g0103531 Helianthus annuus HOM05D004259 ORTHO05D005014 3.6e-132 475.3 364 65.4
MSTRG.24327 Avicennia marina HOM05D004259 ORTHO05D005014 4.8e-132 474.9 364 66.5
CANSAT01G2810 Cannabis sativa HOM05D004259 ORTHO05D005014 4.8e-132 474.9 363 65.3
Gohir.D11G345100 Gossypium hirsutum HOM05D004259 ORTHO05D005014 6.2e-132 474.6 364 65.1
Gorai.007G375500 Gossypium raimondii HOM05D004259 ORTHO05D005014 8.1e-132 474.2 364 65.1
Gohir.A11G326200 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.8e-131 473.0 364 64.6
Aqoxy7G01016 Aquilegia oxysepala HOM05D004259 ORTHO05D005014 2.4e-131 472.6 354 66.9
SalBow3G4106 Salvia bowleyana HOM05D004259 ORTHO05D005014 3.1e-131 472.2 348 67.8
SGA_v2.0_scaffold204G41641 Striga asiatica HOM05D004259 ORTHO05D005014 4.0e-131 471.9 363 64.7
ClCG08G015740 Citrullus lanatus HOM05D004259 ORTHO05D005014 9.0e-131 470.7 372 62.9
GSVIVG01009522001 Vitis vinifera HOM05D004259 ORTHO05D005014 1.5e-130 469.9 312 75.0
Peaxi162Scf00162g00029 Petunia axillaris HOM05D004259 ORTHO05D005014 3.4e-130 468.8 372 63.2
PSO675G0522 Papaver somniferum HOM05D004259 ORTHO05D005014 5.8e-130 468.0 363 65.0
Peaxi162Scf00929g00211 Petunia axillaris HOM05D004259 ORTHO05D005014 7.6e-130 467.6 372 63.7
Thecc.05G042500 Theobroma cacao HOM05D004259 ORTHO05D005014 1.3e-129 466.8 363 64.5
Dinv39327 Davidia involucrata HOM05D004259 ORTHO05D005014 2.9e-129 465.7 322 73.0
MBI02_g17334_MAGBIO Magnolia biondii HOM05D004259 ORTHO05D005014 8.4e-129 464.2 389 62.2
QL02p005360 Quercus lobata HOM05D004259 ORTHO05D005014 8.4e-129 464.2 420 58.6
Rhsim10G0028600 Rhododendron simsii HOM05D004259 ORTHO05D005014 8.4e-129 464.2 350 68.9
FvH4_2g34610 Fragaria vesca HOM05D004259 ORTHO05D005014 4.2e-128 461.8 364 62.9
MD08G1103300 Malus domestica HOM05D004259 ORTHO05D005014 4.2e-128 461.8 363 64.2
Nn1g05830 Nelumbo nucifera HOM05D004259 ORTHO05D005014 1.2e-127 460.3 361 63.2
RcHm_v2.0_Chr6g0307691 Rosa chinensis HOM05D004259 ORTHO05D005014 1.6e-127 459.9 364 62.9
EL10Ac3g06655 Beta vulgaris HOM05D004259 ORTHO05D005014 3.5e-127 458.8 363 62.0
PSO339G6255 Papaver somniferum HOM05D004259 ORTHO05D005014 4.6e-127 458.4 363 63.9
FAN20G1942 Fragaria x ananassa HOM05D004259 ORTHO05D005014 6.0e-127 458.0 364 62.6
AUR62039303 Chenopodium quinoa HOM05D004259 ORTHO05D005014 7.9e-127 457.6 363 62.0
FAN15G2861 Fragaria x ananassa HOM05D001625 ORTHO05D005014 7.9e-127 457.6 362 63.0
SalBow2G1152 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.0e-126 457.2 387 61.8
PGSC0003DMG400027003 Solanum tuberosum HOM05D004259 ORTHO05D005014 1.3e-126 456.8 362 63.8
Sopen06g029870 Solanum pennellii HOM05D004259 ORTHO05D005014 2.3e-126 456.1 362 63.8
AUR62022427 Chenopodium quinoa HOM05D004259 ORTHO05D005014 5.1e-126 454.9 363 62.3
SalBow2G2463 Salvia bowleyana HOM05D004259 ORTHO05D005014 5.1e-126 454.9 387 61.5
Hma1.2p1_0718F.1_g208420 Hydrangea macrophylla HOM05D004259 ORTHO05D005014 6.7e-126 454.5 314 74.2
Solyc06g073510.3 Solanum lycopersicum HOM05D004259 ORTHO05D005014 6.7e-126 454.5 362 63.3
Lalb_Chr19g0129351 Lupinus albus HOM05D004259 ORTHO05D005014 1.5e-125 453.4 362 62.7
THA.LOC104806568 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 1.5e-125 453.4 363 61.4
SalBow2G2012 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.9e-125 453.0 387 61.2
Haze_17543 Corylus avellana HOM05D004259 ORTHO05D005014 3.3e-125 452.2 311 71.4
PSO541G1765 Papaver somniferum HOM05D004259 ORTHO05D005014 3.3e-125 452.2 363 62.3
Ca_01811_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 7.4e-125 451.1 350 65.1
Ca_29610_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 7.4e-125 451.1 350 65.1
Nitab4.5_0002664g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 9.6e-125 450.7 396 59.6
TWI53G0519 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 9.6e-125 450.7 349 64.5
Lj5g0003666 Lotus japonicus HOM05D004259 ORTHO05D005014 3.7e-124 448.7 360 62.2
Sabra03G0064000 Salix brachista HOM05D004259 ORTHO05D005014 3.7e-124 448.7 343 67.6
Glyma.14G082100 Glycine max HOM05D004259 ORTHO05D005014 6.2e-124 448.0 366 63.4
CAN.G65.190 Capsicum annuum HOM05D004259 ORTHO05D005014 1.1e-123 447.2 369 61.2
Sabra11G0061200 Salix brachista HOM05D004259 ORTHO05D005014 1.4e-123 446.8 346 66.8
TPR.G17553 Trifolium pratense HOM05D004259 ORTHO05D005014 1.4e-123 446.8 343 64.7
AT2G37560 Arabidopsis thaliana HOM05D004259 ORTHO05D005014 1.8e-123 446.4 346 62.1
Haze_17552 Corylus avellana HOM05D004259 ORTHO05D005014 6.9e-123 444.5 356 64.0
FAN27G2417 Fragaria x ananassa HOM05D004259 ORTHO05D005014 6.9e-123 444.5 344 64.8
Sc07g0003460 Simmondsia chinensis HOM05D004259 ORTHO05D005014 6.9e-123 444.5 300 72.0
ATR0100G023 Amborella trichopoda HOM05D004259 ORTHO05D005014 9.0e-123 444.1 361 61.8
BcaB02g09273 Brassica carinata HOM05D004259 ORTHO05D005014 9.0e-123 444.1 364 60.7
Sp4g19910 Schrenkiella parvula HOM05D004259 ORTHO05D005014 9.0e-123 444.1 364 61.0
THA.LOC104809222 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 1.5e-122 443.4 367 60.8
unitig_26.g10027 Utricularia gibba HOM05D004259 ORTHO05D005014 2.0e-122 443.0 364 61.3
A05p08400 Brassica napus HOM05D004259 ORTHO05D005014 2.6e-122 442.6 364 60.2
PGR031G2227 Punica granatum HOM05D004259 ORTHO05D005014 2.6e-122 442.6 363 61.7
Phvul.001G021100 Phaseolus vulgaris HOM05D004259 ORTHO05D005014 4.5e-122 441.8 366 61.7
Thhalv10016846m.g Eutrema salsugineum HOM05D004259 ORTHO05D005014 5.8e-122 441.4 364 60.4
CARHR132030 Cardamine hirsuta HOM05D004259 ORTHO05D005014 7.6e-122 441.0 362 60.5
C04p10400 Brassica napus HOM05D004259 ORTHO05D005014 1.3e-121 440.3 364 60.2
Carub.0004s1948 Capsella rubella HOM05D004259 ORTHO05D005014 1.7e-121 439.9 364 59.6
AL4G34050 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 2.2e-121 439.5 364 59.9
BraA05t19805Z Brassica rapa HOM05D004259 ORTHO05D005014 2.2e-121 439.5 364 60.2
BolC4t22638H Brassica oleracea HOM05D004259 ORTHO05D005014 3.8e-121 438.7 364 59.9
BcaC02g11869 Brassica carinata HOM05D004259 ORTHO05D005014 4.9e-121 438.3 363 60.1
VMungo0647G0522 Vigna mungo HOM05D004259 ORTHO05D005014 4.9e-121 438.3 353 62.9
CDE10G1325 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 8.4e-121 437.6 357 61.6
Psat6g012600 Pisum sativum HOM05D004259 ORTHO05D005014 2.5e-120 436.0 342 64.9
Medtr1g019770 Medicago truncatula HOM05D004259 ORTHO05D005014 7.1e-120 434.5 343 63.6
Nitab4.5_0000111g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 7.1e-120 434.5 381 59.6
Nitab4.5_0002045g0130 Nicotiana tabacum HOM05D004259 ORTHO05D005014 2.3e-118 429.5 369 60.4
Peaxi162Scf00003g02311 Petunia axillaris HOM05D004259 ORTHO05D005014 1.9e-117 426.4 397 57.7
Eucgr.F00239 Eucalyptus grandis HOM05D004259 ORTHO05D005014 3.3e-117 425.6 355 60.0
Prupe.1G438300 Prunus persica HOM05D004259 ORTHO05D005014 1.1e-112 410.6 298 68.8
ECA247G2793 Erigeron canadensis HOM05D004259 ORTHO05D005014 1.9e-112 409.8 325 63.4
arahy.Tifrunner.gnm1.ann1.1PWX74 Arachis hypogaea HOM05D004259 ORTHO05D005014 5.5e-112 408.3 353 59.8
arahy.Tifrunner.gnm1.ann1.63NC9C Arachis hypogaea HOM05D004259 ORTHO05D005014 5.5e-112 408.3 353 59.8
Ah.05g168820 Amaranthus hybridus HOM05D001625 ORTHO05D005014 3.5e-111 405.6 385 54.3
Cc10_g04310 Coffea canephora HOM05D004259 ORTHO05D005014 6.3e-108 394.8 351 57.5
Os03g0184700 Oryza sativa ssp. japonica HOM05D004259 ORTHO05D005014 4.1e-107 392.1 354 56.8
Actinidia29866 Actinidia chinensis HOM05D004259 ORTHO05D005014 7.7e-106 387.9 335 62.7
SalBow2G0695 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.7e-105 386.7 285 67.7
Nitab4.5_0004918g0050 Nicotiana tabacum HOM05D004259 ORTHO05D005014 2.3e-102 376.3 354 56.8
MD15G1084600 Malus domestica HOM05D004259 ORTHO05D005014 2.0e-101 373.2 373 54.4
Zm00001eb248940 Zea mays HOM05D004259 ORTHO05D005014 5.7e-101 371.7 358 55.3
SalBow2G2610 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.1e-99 367.5 387 54.0
Rhsim07G0229700 Rhododendron simsii HOM05D004259 ORTHO05D005014 6.9e-99 364.8 328 59.5
vmacro04457 Vaccinium macrocarpon HOM05D004259 ORTHO05D005014 4.5e-98 362.1 350 58.0
Glyma.17G243200 Glycine max HOM05D004259 ORTHO05D005014 6.1e-95 351.7 291 61.9
Rhsim10G0028100 Rhododendron simsii HOM05D004259 ORTHO05D005014 2.4e-91 339.7 350 55.7
TWI53G0792 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 2.9e-89 332.8 254 66.1
AagrBONN_evm.TU.Sc2ySwM_344.5209 Anthoceros agrestis HOM05D004259 ORTHO05D005014 5.2e-86 322.0 354 48.3
COL.COLO4_14836 Corchorus olitorius HOM05D004259 ORTHO05D005014 8.8e-86 321.2 335 51.9
Pp3c18_14740 Physcomitrium patens HOM05D004259 ORTHO05D005014 8.8e-86 321.2 347 49.6
RcHm_v2.0_Chr6g0307531 Rosa chinensis HOM05D004259 ORTHO05D005014 3.7e-84 315.8 329 53.5
SMO147G0302 Selaginella moellendorffii HOM05D004259 ORTHO05D005014 6.3e-84 315.1 326 49.1
Mapoly0106s0035 Marchantia polymorpha HOM05D004259 ORTHO05D005014 4.2e-80 302.4 321 48.6
SEGI_21568 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 1.2e-77 294.3 289 52.2
CBR_g6665 Chara braunii HOM05D004259 ORTHO05D005014 1.7e-73 280.4 337 42.7
SHI12655 Sapria himalayana HOM05D004259 ORTHO05D005014 1.4e-70 270.8 366 44.0
HPP92_027219 Vanilla planifolia HOM05D004259 ORTHO05D005014 6.8e-46 188.7 152 61.2
MCO16G222 Micromonas commoda HOM05D004259 ORTHO05D005014 6.4e-44 182.2 327 33.6
HPP92_027220 Vanilla planifolia HOM05D004259 ORTHO05D005014 4.6e-42 176.0 124 71.0
CDE10G0377 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 5.6e-40 169.1 138 62.3
Nitab4.5_0000017g0120 Nicotiana tabacum HOM05D004259 ORTHO05D005014 3.2e-35 153.3 185 45.9
AL4G34080 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 8.6e-33 145.2 103 67.0
Cc00_g16720 Coffea canephora HOM05D004259 ORTHO05D005014 1.1e-32 144.8 116 63.8
Gohir.D12G080700 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.1e-30 138.3 87 74.7
Gorai.011G277900 Gossypium raimondii HOM05D004259 ORTHO05D005014 5.2e-30 136.0 83 77.1
Gohir.D10G137766 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.0e-29 134.0 103 62.1
Gorai.005G118700 Gossypium raimondii HOM05D004259 ORTHO05D005014 2.0e-29 134.0 89 71.9
PRCOL_00004897 Prasinoderma coloniale HOM05D004259 ORTHO05D005014 3.4e-29 133.3 284 28.9
Gohir.D02G104501 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.3e-28 131.3 89 70.8
Gohir.D03G074850 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.3e-25 120.6 79 72.2
Gohir.D01G124400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 8.7e-25 118.6 78 71.8
Gohir.D09G120150 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.1e-24 118.2 78 71.8
Gorai.008G056700 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.5e-24 117.9 79 70.9
Gohir.D02G123750 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.9e-24 117.5 78 70.5
Gorai.005G130400 Gossypium raimondii HOM05D004259 ORTHO05D005014 4.3e-24 116.3 78 70.5
Gohir.D04G089650 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.1e-23 114.0 79 68.4
Gorai.004G133100 Gossypium raimondii HOM05D004259 ORTHO05D005014 2.1e-23 114.0 78 69.2
Gohir.D10G134400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.8e-22 110.9 70 72.9
Gorai.012G099900 Gossypium raimondii HOM05D004259 ORTHO05D005014 9.0e-22 108.6 79 64.6
Aa31LG5G22990 Aethionema arabicum HOM05D004259 ORTHO05D005014 1.2e-21 108.2 124 46.8
Cre03.g199400 Chlamydomonas reinhardtii HOM05D004259 ORTHO05D005014 2.6e-21 107.1 336 27.7
Cfa024619 Carpinus fangiana HOM05D004259 ORTHO05D005014 7.6e-21 105.5 315 26.0
Gorai.006G043100 Gossypium raimondii HOM05D004259 ORTHO05D005014 9.9e-21 105.1 101 56.4
Aa31sc112G60 Aethionema arabicum HOM05D004259 ORTHO05D005014 3.8e-20 103.2 78 61.5
Cc06_g20720 Coffea canephora HOM05D004259 ORTHO05D005014 1.2e-18 98.2 104 55.8
PSO724G0286 Papaver somniferum HOM05D004259 ORTHO05D005014 7.8e-18 95.5 83 51.8
SEGI_22221 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 7.8e-18 95.5 76 60.5
Actinidia38053 Actinidia chinensis HOM05D004259 ORTHO05D005014 1.3e-17 94.7 90 57.8
PSO724G0742 Papaver somniferum HOM05D004259 ORTHO05D005014 3.3e-16 90.1 82 50.0
Cc11_g02680 Coffea canephora HOM05D004259 ORTHO05D005014 1.6e-15 87.8 60 70.0
Gohir.D09G088725 Gossypium hirsutum HOM05D004259 ORTHO05D005014 8.1e-15 85.5 51 78.4
Sabra15G0136400 Salix brachista HOM05D004259 ORTHO05D004947 1.4e-14 84.7 67 68.7
EL10Ac4g08135 Beta vulgaris HOM05D004259 ORTHO05D005014 2.9e-12 77.0 46 76.1
Cc00_g00370 Coffea canephora HOM05D004259 ORTHO05D005014 1.2e-10 71.6 52 63.5
Cc01_g09720 Coffea canephora HOM05D004259 ORTHO05D005014 1.0e-09 68.6 43 72.1
Gohir.D09G037800 Gossypium hirsutum HOM05D004259 ORTHO05D005014 3.0e-09 67.0 43 74.4
Gorai.011G153000 Gossypium raimondii HOM05D004259 ORTHO05D005014 2.5e-08 63.9 97 43.3
Cc02_g31720 Coffea canephora HOM05D004259 ORTHO05D005014 4.3e-08 63.2 42 66.7
Cc10_g11800 Coffea canephora HOM05D006912 ORTHO05D008686 5.6e-08 62.8 43 65.1
Aa31LG5G23020 Aethionema arabicum HOM05D004259 ORTHO05D005014 1.6e-07 61.2 46 63.0
Gohir.D01G066700 Gossypium hirsutum HOM05D000706 ORTHO05D013538 3.7e-07 60.1 49 55.1
Gohir.D01G081300 Gossypium hirsutum HOM05D000706 ORTHO05D013538 3.7e-07 60.1 37 67.6
Gohir.D09G037400 Gossypium hirsutum HOM05D000706 ORTHO05D013538 8.1e-07 58.9 37 64.9
Gorai.007G356500 Gossypium raimondii HOM05D000706 ORTHO05D013538 8.1e-07 58.9 49 55.1
Cc09_g06650 Coffea canephora HOM05D004259 ORTHO05D005014 1.4e-06 58.2 42 59.5
Gohir.D03G122500 Gossypium hirsutum HOM05D000706 ORTHO05D013538 1.4e-06 58.2 37 64.9
Gohir.D06G127100 Gossypium hirsutum HOM05D000706 ORTHO05D013538 1.4e-06 58.2 78 44.9
Gohir.D09G143401 Gossypium hirsutum HOM05D000706 ORTHO05D013538 1.4e-06 58.2 49 55.1
Gorai.010G148400 Gossypium raimondii HOM05D000706 ORTHO05D013538 1.4e-06 58.2 78 44.9
Gohir.D06G138051 Gossypium hirsutum HOM05D000706 ORTHO05D013538 3.1e-06 57.0 37 64.9
Gohir.D13G142000 Gossypium hirsutum HOM05D000706 ORTHO05D013538 3.1e-06 57.0 91 42.9


User provided reference genes

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