Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037720 Camellia sinensis var. sinensis HOM05D005104 ORTHO05D006614 6.3e-124 447.6 249 100.0
Actinidia28058 Actinidia chinensis HOM05D005104 ORTHO05D006614 2.8e-95 352.4 251 74.5
Dinv24198 Davidia involucrata HOM05D005104 ORTHO05D006614 1.3e-92 343.6 255 73.7
vmacro19925 Vaccinium macrocarpon HOM05D005104 ORTHO05D006614 2.1e-82 309.7 291 66.0
Hma1.2p1_0522F.1_g171600 Hydrangea macrophylla HOM05D005104 ORTHO05D006614 2.2e-76 289.7 204 71.6
Manes.14G166400 Manihot esculenta HOM05D005104 ORTHO05D006614 1.0e-73 280.8 252 64.7
Haze_10684 Corylus avellana HOM05D005104 ORTHO05D006614 3.0e-73 279.3 253 72.3
Rhsim05G0108500 Rhododendron simsii HOM05D005104 ORTHO05D006614 8.7e-73 277.7 211 68.7
Cfa005608 Carpinus fangiana HOM05D005104 ORTHO05D006614 2.5e-72 276.2 254 70.5
MSTRG.27791 Avicennia marina HOM05D005104 ORTHO05D006614 5.6e-72 275.0 250 61.6
Oeu007957.1 Olea europaea HOM05D005104 ORTHO05D006614 2.8e-71 272.7 251 62.2
Atru.chr6.1109 Acer truncatum HOM05D005104 ORTHO05D006614 1.4e-70 270.4 249 69.5
SalBow6G6009 Salvia bowleyana HOM05D005104 ORTHO05D006614 1.8e-70 270.0 252 61.1
SalBow6G6298 Salvia bowleyana HOM05D005104 ORTHO05D006614 1.8e-70 270.0 252 61.1
PGR142G2776 Punica granatum HOM05D005104 ORTHO05D006614 2.4e-70 269.6 250 61.6
Prupe.8G062400 Prunus persica HOM05D005104 ORTHO05D006614 3.1e-70 269.2 253 70.0
Eucgr.I02668 Eucalyptus grandis HOM05D005104 ORTHO05D006614 4.0e-70 268.9 249 60.6
GSVIVG01003083001 Vitis vinifera HOM05D005104 ORTHO05D006614 9.0e-70 267.7 251 62.5
Atru.chr6.1089 Acer truncatum HOM05D005104 ORTHO05D006614 1.2e-69 267.3 251 69.7
CiPaw.05G036500 Carya illinoinensis HOM05D005104 ORTHO05D006614 1.2e-69 267.3 261 66.3
Thecc.02G140100 Theobroma cacao HOM05D005104 ORTHO05D006614 1.2e-69 267.3 257 67.7
SGA_v2.0_scaffold45G17311 Striga asiatica HOM05D005104 ORTHO05D006614 5.8e-69 265.0 256 62.1
TAR628G1132 Trochodendron aralioides HOM05D005104 ORTHO05D006614 9.9e-69 264.2 250 60.0
Migut.N01063 Erythranthe guttata HOM05D005104 ORTHO05D006614 1.7e-68 263.5 250 60.0
MELO3C018651.2 Cucumis melo HOM05D005104 ORTHO05D006614 6.4e-68 261.5 259 62.5
Duzib248G0158 Durio zibethinus HOM05D005104 ORTHO05D006614 6.4e-68 261.5 255 59.6
Aqoxy6G00597 Aquilegia oxysepala HOM05D005104 ORTHO05D006614 8.4e-68 261.2 258 65.9
Sopen10g017460 Solanum pennellii HOM05D005104 ORTHO05D006614 8.4e-68 261.2 249 64.7
PGSC0003DMG400017693 Solanum tuberosum HOM05D005104 ORTHO05D006614 1.1e-67 260.8 249 63.5
Sed0008592 Sechium edule HOM05D005104 ORTHO05D006614 4.2e-67 258.8 257 65.8
Solyc10g047220.2 Solanum lycopersicum HOM05D005104 ORTHO05D006614 5.4e-67 258.5 249 67.5
Gohir.A04G113100 Gossypium hirsutum HOM05D005104 ORTHO05D006614 1.6e-66 256.9 261 63.2
CANSAT11G2657 Cannabis sativa HOM05D005104 ORTHO05D006614 4.6e-66 255.4 270 58.5
DCAR_001791 Daucus carota HOM05D005104 ORTHO05D006614 4.6e-66 255.4 251 57.8
HanXRQChr10g0295831 Helianthus annuus HOM05D005104 ORTHO05D006614 4.6e-66 255.4 258 57.8
Gohir.A04G112960 Gossypium hirsutum HOM05D005104 ORTHO05D006614 7.8e-66 254.6 206 68.9
Lsat_1_v5_gn_5_107140 Lactuca sativa HOM05D005104 ORTHO05D006614 7.8e-66 254.6 256 65.2
CsaV3_7G006430 Cucumis sativus L. HOM05D005104 ORTHO05D006614 1.0e-65 254.2 272 56.2
Phvul.002G208000 Phaseolus vulgaris HOM05D005104 ORTHO05D006614 1.0e-65 254.2 254 60.6
Gohir.D04G154400 Gossypium hirsutum HOM05D005104 ORTHO05D006614 1.3e-65 253.8 259 62.2
Gorai.012G141700 Gossypium raimondii HOM05D005104 ORTHO05D006614 1.3e-65 253.8 259 62.2
Nn1g05321 Nelumbo nucifera HOM05D005104 ORTHO05D006614 1.7e-65 253.4 250 64.0
Glyma.05G118400 Glycine max HOM05D005104 ORTHO05D006614 3.0e-65 252.7 254 65.4
ECA234G0341 Erigeron canadensis HOM05D005104 ORTHO05D006614 3.9e-65 252.3 206 66.0
arahy.Tifrunner.gnm1.ann1.V9NXIE Arachis hypogaea HOM05D005104 ORTHO05D006614 5.1e-65 251.9 258 62.0
MD10G1051500 Malus domestica HOM05D005104 ORTHO05D006614 5.1e-65 251.9 254 68.1
VMungo0251G0802 Vigna mungo HOM05D005104 ORTHO05D006614 5.1e-65 251.9 262 58.0
Ciclev10029197m.g Citrus clementina HOM05D005104 ORTHO05D006614 8.7e-65 251.1 249 67.1
RcHm_v2.0_Chr6g0273461 Rosa chinensis HOM05D005104 ORTHO05D006614 1.9e-64 250.0 250 64.8
FvH4_2g12710 Fragaria vesca HOM05D005104 ORTHO05D006614 3.3e-64 249.2 251 63.7
Glyma.08G073500 Glycine max HOM05D005104 ORTHO05D006614 3.3e-64 249.2 258 64.7
ClCG09G015340 Citrullus lanatus HOM05D005104 ORTHO05D006614 7.3e-64 248.1 278 57.6
arahy.Tifrunner.gnm1.ann1.PH7E5N Arachis hypogaea HOM05D005104 ORTHO05D006614 9.6e-64 247.7 258 62.4
COL.COLO4_20953 Corchorus olitorius HOM05D005104 ORTHO05D006614 1.1e-62 244.2 258 60.1
Lalb_Chr10g0097741 Lupinus albus HOM05D005104 ORTHO05D006614 1.1e-62 244.2 258 62.8
Psat7g098720 Pisum sativum HOM05D005104 ORTHO05D006614 2.4e-62 243.0 257 56.4
FAN20G1981 Fragaria x ananassa HOM05D005104 ORTHO05D006614 3.1e-62 242.7 250 62.8
FAN27G3119 Fragaria x ananassa HOM05D005104 ORTHO05D006614 5.3e-62 241.9 251 60.6
TPR.G10460 Trifolium pratense HOM05D005104 ORTHO05D006614 9.0e-62 241.1 200 68.0
Medtr4g094252 Medicago truncatula HOM05D005104 ORTHO05D006614 1.2e-61 240.7 268 55.6
TWI59G0245 Tripterygium wilfordii HOM05D005104 ORTHO05D006614 1.5e-61 240.4 252 56.3
Peaxi162Scf00003g03543 Petunia axillaris HOM05D005104 ORTHO05D006614 4.5e-61 238.8 249 67.9
Lj4g0020611 Lotus japonicus HOM05D005104 ORTHO05D006614 5.8e-61 238.4 250 56.0
QL11p020542 Quercus lobata HOM05D005104 ORTHO05D006614 9.9e-61 237.7 278 61.5
Cpa.g.sc42.74 Carica papaya HOM05D005104 ORTHO05D006614 1.7e-60 236.9 262 55.3
Hma1.2p1_0522F.1_g171590 Hydrangea macrophylla HOM05D005104 ORTHO05D006614 1.9e-59 233.4 206 61.7
ATR0564G397 Amborella trichopoda HOM05D005104 ORTHO05D006614 2.4e-59 233.0 250 57.2
Sp2g27220 Schrenkiella parvula HOM05D005104 ORTHO05D006614 3.2e-59 232.6 249 53.8
Oeu026158.1 Olea europaea HOM05D005104 ORTHO05D006614 5.4e-59 231.9 180 70.6
PSO781G0266 Papaver somniferum HOM05D005104 ORTHO05D006614 9.3e-59 231.1 260 54.6
BcaB07g29727 Brassica carinata HOM05D005104 ORTHO05D006614 4.6e-58 228.8 250 54.0
Thhalv10004872m.g Eutrema salsugineum HOM05D005104 ORTHO05D006614 4.6e-58 228.8 249 53.4
BcaC01g02673 Brassica carinata HOM05D005104 ORTHO05D006614 7.9e-58 228.0 250 58.4
A06p30880 Brassica napus HOM05D005104 ORTHO05D006614 7.9e-58 228.0 250 58.4
BcaB02g09781 Brassica carinata HOM05D005104 ORTHO05D006614 1.0e-57 227.6 250 55.6
PSO541G4381 Papaver somniferum HOM05D005104 ORTHO05D006614 5.1e-57 225.3 259 54.1
HPP92_006000 Vanilla planifolia HOM05D005104 ORTHO05D006614 5.1e-57 225.3 254 55.5
BolC3t18470H Brassica oleracea HOM05D005104 ORTHO05D006614 8.7e-57 224.6 250 57.6
C03p62090 Brassica napus HOM05D005104 ORTHO05D006614 1.1e-56 224.2 250 57.6
Ca_18345_v3 Cicer arietinum L. HOM05D005104 ORTHO05D006614 1.1e-56 224.2 277 53.4
BcaC02g09479 Brassica carinata HOM05D002012 ORTHO05D001992 1.9e-56 223.4 219 58.9
Cc02_g21630 Coffea canephora HOM05D005104 ORTHO05D006614 1.9e-56 223.4 250 64.0
AL8G41430 Arabidopsis lyrata HOM05D005104 ORTHO05D006614 2.5e-56 223.0 250 52.8
AT5G64160 Arabidopsis thaliana HOM05D005104 ORTHO05D006614 2.5e-56 223.0 250 52.8
CDE10G0587 Ceratophyllum demersum HOM05D005104 ORTHO05D006614 3.3e-56 222.6 249 50.6
Potri.003G023601 Populus trichocarpa HOM05D005104 ORTHO05D006614 9.6e-56 221.1 263 59.7
Carub.0008s2495 Capsella rubella HOM05D005104 ORTHO05D006614 4.8e-55 218.8 250 54.0
CARHR278070 Cardamine hirsuta HOM05D005104 ORTHO05D006614 2.4e-54 216.5 249 52.6
C09p58340 Brassica napus HOM05D005104 ORTHO05D006614 2.0e-53 213.4 223 57.0
BolC9t58698H Brassica oleracea HOM05D005104 ORTHO05D006614 2.0e-53 213.4 223 57.0
C09p58390 Brassica napus HOM05D005104 ORTHO05D006614 1.7e-52 210.3 219 56.2
C06p26800 Brassica napus HOM05D005104 ORTHO05D006614 2.4e-51 206.5 223 55.6
Sabra01G0157800 Salix brachista HOM05D005104 ORTHO05D006614 7.1e-51 204.9 280 52.5
BolC6t37855H Brassica oleracea HOM05D005104 ORTHO05D006614 9.3e-51 204.5 223 55.2
GSVIVG01003087001 Vitis vinifera HOM05D005104 ORTHO05D006614 3.5e-50 202.6 138 76.8
Hund06391 Selenicereus undatus HOM05D005104 ORTHO05D006614 1.0e-49 201.1 252 49.6
BcaC08g45071 Brassica carinata HOM05D005104 ORTHO05D006614 2.3e-49 199.9 204 56.9
GSVIVG01013334001 Vitis vinifera HOM05D005104 ORTHO05D006614 2.3e-49 199.9 138 76.1
SEGI_35517 Sequoiadendron giganteum HOM05D005104 ORTHO05D006614 3.9e-49 199.1 256 48.8
Aa31LG1G17770 Aethionema arabicum HOM05D005104 ORTHO05D006614 5.1e-49 198.7 267 48.3
C02p46090 Brassica napus HOM05D005104 ORTHO05D006614 8.7e-49 198.0 223 55.2
Lj5A240T40 Lonicera japonica HOM05D005104 ORTHO05D006614 5.6e-48 195.3 138 73.9
Os02g0753200 Oryza sativa ssp. japonica HOM05D005104 ORTHO05D006614 5.6e-48 195.3 193 59.6
MBI02_g08741_MAGBIO Magnolia biondii HOM05D005104 ORTHO05D006614 1.3e-47 194.1 135 72.6
BraA03t13815Z Brassica rapa HOM05D005104 ORTHO05D006614 3.7e-47 192.6 218 51.4
AUR62010117 Chenopodium quinoa HOM05D005104 ORTHO05D006614 4.8e-47 192.2 253 57.3
AUR62013112 Chenopodium quinoa HOM05D005104 ORTHO05D006614 2.0e-45 186.8 253 56.9
FAN24G3378 Fragaria x ananassa HOM05D005104 ORTHO05D006614 1.7e-44 183.7 140 71.4
GSVIVG01003093001 Vitis vinifera HOM05D005104 ORTHO05D006614 7.9e-42 174.9 121 76.9
Zm00001eb194200 Zea mays HOM05D005104 ORTHO05D006614 1.0e-41 174.5 198 52.0
Ah.01g009520 Amaranthus hybridus HOM05D005104 ORTHO05D006614 2.3e-41 173.3 252 45.6
Nitab4.5_0000078g0030 Nicotiana tabacum HOM05D005104 ORTHO05D006614 8.2e-39 164.9 221 50.2
Zm00001eb255190 Zea mays HOM05D005104 ORTHO05D006614 1.4e-38 164.1 264 43.2
AagrBONN_evm.TU.Sc2ySwM_117.984 Anthoceros agrestis HOM05D005104 ORTHO05D006614 2.2e-36 156.8 255 42.4
Mapoly0096s0033 Marchantia polymorpha HOM05D005104 ORTHO05D006614 8.5e-36 154.8 265 40.4
SMO117G0229 Selaginella moellendorffii HOM05D005104 ORTHO05D006614 6.3e-31 138.7 202 45.0
Sc08g0003350 Simmondsia chinensis HOM05D005104 ORTHO05D006614 8.2e-31 138.3 141 57.4
CAN.G1.36 Capsicum annuum HOM05D005104 ORTHO05D006614 1.4e-30 137.5 179 56.4
unitig_22.g6836 Utricularia gibba HOM05D001058 ORTHO05D000911 6.9e-30 135.2 179 48.0
Pp3c18_21190 Physcomitrium patens HOM05D005104 ORTHO05D006614 5.0e-28 129.0 253 37.9
THA.LOC104818435 Tarenaya hassleriana HOM05D005104 ORTHO05D006614 6.1e-26 122.1 176 44.9
BolC4t25904H Brassica oleracea HOM05D005104 ORTHO05D006614 7.4e-24 115.2 74 75.7
Nitab4.5_0005015g0050 Nicotiana tabacum HOM05D005104 ORTHO05D006614 1.3e-23 114.4 155 60.6
CDE10G1356 Ceratophyllum demersum HOM05D005104 ORTHO05D006614 1.5e-21 107.5 176 38.1
EL10Ac9g21466 Beta vulgaris HOM05D005104 ORTHO05D006614 1.7e-20 104.0 75 72.0
Hma1.2p1_0516F.1_g170490 Hydrangea macrophylla HOM05D005104 ORTHO05D006614 2.5e-19 100.1 93 53.8
CBR_g47116 Chara braunii HOM05D005104 ORTHO05D006614 1.0e-17 94.7 223 35.4
Duzib132G1169 Durio zibethinus HOM05D005104 ORTHO05D006614 3.1e-14 83.2 133 43.6
A02p26040 Brassica napus HOM05D005104 ORTHO05D006614 1.2e-13 81.3 106 48.1
EL10Ac9g21465 Beta vulgaris HOM05D005104 ORTHO05D006614 1.2e-10 71.2 224 36.6
FAN15G2545 Fragaria x ananassa HOM05D005104 ORTHO05D006614 6.1e-10 68.9 118 55.9
arahy.Tifrunner.gnm1.ann1.H2YG1F Arachis hypogaea HOM05D005104 ORTHO05D006614 2.3e-09 67.0 60 58.3
Potri.001G206032 Populus trichocarpa HOM05D005104 ORTHO05D006614 5.2e-09 65.9 184 41.8
C07p45690 Brassica napus HOM05D005104 ORTHO05D021970 1.2e-08 64.7 129 38.0
C03p52730 Brassica napus HOM05D005104 ORTHO05D021970 3.3e-08 63.2 132 36.4
BolC6t38485H Brassica oleracea HOM05D005104 ORTHO05D006614 3.3e-08 63.2 101 41.6
C09p03790 Brassica napus HOM05D005104 ORTHO05D006614 1.7e-07 60.8 130 36.2
A10p06060 Brassica napus HOM05D005104 ORTHO05D006614 4.8e-07 59.3 76 48.7
C05p26840 Brassica napus HOM05D005104 ORTHO05D006614 4.8e-07 59.3 129 36.4
Cre12.g509300 Chlamydomonas reinhardtii HOM05D005104 ORTHO05D006614 5.3e-06 55.8 191 28.8


User provided reference genes

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