Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037716 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.1e-215 753.1 380 100.0
CSS0025326 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 6.3e-192 674.1 379 92.1
CSS0034194 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 2.5e-188 662.1 397 87.4
CSS0020440 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.5e-185 652.9 368 91.8
CSS0043256 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 2.5e-180 635.6 379 87.9
CSS0031560 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 2.8e-179 632.1 401 85.0
CSS0040633 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.7e-149 533.1 397 75.3
CSS0008548 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 2.4e-146 522.7 414 72.2
Actinidia28645 Actinidia chinensis HOM05D004724 ORTHO05D005734 1.3e-141 506.9 415 67.5
CSS0003173 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 3.8e-136 488.8 417 67.9
Lj6A780T47 Lonicera japonica HOM05D004724 ORTHO05D005734 1.2e-134 483.8 417 64.3
Hma1.2p1_0354F.1_g133420 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 2.5e-132 476.1 414 64.3
GSVIVG01012211001 Vitis vinifera HOM05D004724 ORTHO05D005734 1.3e-131 473.8 415 62.2
CSS0030883 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.1e-127 460.7 403 66.5
Nn4g23396 Nelumbo nucifera HOM05D004724 ORTHO05D005734 1.4e-127 460.3 410 61.7
QL03p072107 Quercus lobata HOM05D004724 ORTHO05D005734 1.9e-127 459.9 413 61.5
QL03p072513 Quercus lobata HOM05D004724 ORTHO05D005734 1.9e-127 459.9 413 61.3
Migut.E00049 Erythranthe guttata HOM05D004724 ORTHO05D005734 7.1e-127 458.0 417 59.0
Nn3g17424 Nelumbo nucifera HOM05D004724 ORTHO05D005734 1.2e-126 457.2 412 61.4
vmacro16381 Vaccinium macrocarpon HOM05D004724 ORTHO05D005734 2.1e-126 456.4 508 53.1
CiPaw.05G125900 Carya illinoinensis HOM05D004724 ORTHO05D005734 3.5e-126 455.7 412 60.7
MSTRG.13448 Avicennia marina HOM05D004724 ORTHO05D005734 1.5e-124 450.3 422 60.2
Sc04g0007630 Simmondsia chinensis HOM05D004724 ORTHO05D005734 1.5e-124 450.3 415 59.8
Dinv15029 Davidia involucrata HOM05D004724 ORTHO05D005734 6.2e-123 444.9 366 67.2
Dinv34076 Davidia involucrata HOM05D004724 ORTHO05D005734 6.2e-123 444.9 366 67.2
Thecc.02G332500 Theobroma cacao HOM05D004724 ORTHO05D005734 2.4e-122 443.0 412 58.5
Eucgr.B03160 Eucalyptus grandis HOM05D004724 ORTHO05D005734 1.2e-121 440.7 413 59.3
HanXRQChr08g0211831 Helianthus annuus HOM05D004724 ORTHO05D005734 2.0e-121 439.9 417 58.8
MD13G1063400 Malus domestica HOM05D004724 ORTHO05D005734 2.0e-121 439.9 414 59.2
MD16G1061800 Malus domestica HOM05D004724 ORTHO05D005734 1.0e-120 437.6 414 59.7
THA.LOC104822013 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 2.9e-120 436.0 412 58.0
PGR102G0250 Punica granatum HOM05D004724 ORTHO05D005734 4.9e-120 435.3 412 57.8
TWI31G1115 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 8.4e-120 434.5 412 58.0
TWI79G1393 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 2.1e-118 429.9 410 57.6
Gohir.A03G104200 Gossypium hirsutum HOM05D004724 ORTHO05D005734 6.0e-118 428.3 413 56.9
Gorai.005G145100 Gossypium raimondii HOM05D004724 ORTHO05D005734 1.3e-117 427.2 412 56.6
Gohir.D02G129300 Gossypium hirsutum HOM05D004724 ORTHO05D005734 3.0e-117 426.0 412 56.3
Nitab4.5_0004171g0040 Nicotiana tabacum HOM05D004724 ORTHO05D005734 1.9e-116 423.3 425 53.9
Nitab4.5_0000231g0420 Nicotiana tabacum HOM05D004724 ORTHO05D005734 3.3e-116 422.5 418 54.3
MELO3C011422.2 Cucumis melo HOM05D004724 ORTHO05D005734 2.2e-115 419.9 412 56.3
Lalb_Chr10g0098781 Lupinus albus HOM05D004724 ORTHO05D005734 2.4e-114 416.4 413 55.9
CsaV3_6G033660 Cucumis sativus L. HOM05D004724 ORTHO05D005734 1.5e-113 413.7 412 55.6
TAR622G0524 Trochodendron aralioides HOM05D004724 ORTHO05D005734 2.6e-113 412.9 412 57.3
RcHm_v2.0_Chr4g0438491 Rosa chinensis HOM05D004724 ORTHO05D005734 4.5e-113 412.1 415 54.9
PGSC0003DMG400028320 Solanum tuberosum HOM05D004724 ORTHO05D005734 5.9e-113 411.8 426 51.9
Oeu048146.1 Olea europaea HOM05D004724 ORTHO05D005734 7.7e-113 411.4 417 57.1
TAR374G1337 Trochodendron aralioides HOM05D004724 ORTHO05D005734 1.0e-112 411.0 412 57.3
MBI16_g13587_MAGBIO Magnolia biondii HOM05D004724 ORTHO05D005734 2.2e-112 409.8 410 56.3
Sopen05g007210 Solanum pennellii HOM05D004724 ORTHO05D005734 3.8e-112 409.1 426 51.4
Peaxi162Scf00175g00020 Petunia axillaris HOM05D004724 ORTHO05D005734 5.0e-112 408.7 427 52.0
Lj2g0005374 Lotus japonicus HOM05D004724 ORTHO05D005734 1.4e-111 407.1 413 53.8
CARHR025500 Cardamine hirsuta HOM05D004724 ORTHO05D005734 2.5e-111 406.4 413 54.7
Aa31LG7G8630 Aethionema arabicum HOM05D004724 ORTHO05D005734 3.2e-111 406.0 409 53.8
TPR.G24471 Trifolium pratense HOM05D004724 ORTHO05D005734 4.2e-111 405.6 413 55.0
Glyma.01G058200 Glycine max HOM05D004724 ORTHO05D005734 5.5e-111 405.2 414 53.6
Rhsim12G0135900 Rhododendron simsii HOM05D004724 ORTHO05D005734 7.2e-111 404.8 368 62.5
SalBow2G3108 Salvia bowleyana HOM05D004724 ORTHO05D005734 1.2e-110 404.1 427 52.9
Ca_04959_v3 Cicer arietinum L. HOM05D004724 ORTHO05D005734 4.6e-110 402.1 413 55.2
Atru.chr11.1649 Acer truncatum HOM05D004724 ORTHO05D005734 6.1e-110 401.7 413 54.2
Lsat_1_v5_gn_8_47681 Lactuca sativa HOM05D004724 ORTHO05D005734 6.1e-110 401.7 373 59.8
Cfa008886 Carpinus fangiana HOM05D004724 ORTHO05D005734 1.0e-109 401.0 413 55.4
AT1G26460 Arabidopsis thaliana HOM05D004724 ORTHO05D005734 1.8e-109 400.2 419 53.5
CAN.G616.33 Capsicum annuum HOM05D004724 ORTHO05D005734 3.0e-109 399.4 428 50.0
Glyma.02G116000 Glycine max HOM05D004724 ORTHO05D005734 8.8e-109 397.9 410 53.7
AUR62007926 Chenopodium quinoa HOM05D004724 ORTHO05D005734 1.5e-108 397.1 410 54.6
AUR62003111 Chenopodium quinoa HOM05D004724 ORTHO05D005734 4.3e-108 395.6 410 54.1
Manes.01G028400 Manihot esculenta HOM05D004724 ORTHO05D005734 4.3e-108 395.6 414 52.4
Ciclev10031249m.g Citrus clementina HOM05D004724 ORTHO05D005734 7.4e-108 394.8 413 53.8
Haze_11916 Corylus avellana HOM05D004724 ORTHO05D005734 7.4e-108 394.8 400 56.5
PSO017G2003 Papaver somniferum HOM05D004724 ORTHO05D005734 1.7e-107 393.7 412 52.4
PSO478G4140 Papaver somniferum HOM05D004724 ORTHO05D005734 1.7e-107 393.7 412 52.4
ClCG08G010390 Citrullus lanatus HOM05D004724 ORTHO05D005734 2.8e-107 392.9 412 53.4
Prupe.1G286100 Prunus persica HOM05D004724 ORTHO05D005734 1.1e-106 391.0 412 53.4
BolC5t31188H Brassica oleracea HOM05D004724 ORTHO05D005734 1.8e-106 390.2 422 51.9
SalBow8G1172 Salvia bowleyana HOM05D004724 ORTHO05D005734 5.3e-106 388.7 454 49.3
Sed0014019 Sechium edule HOM05D004724 ORTHO05D005734 5.3e-106 388.7 413 53.3
Medtr5g044270 Medicago truncatula HOM05D004724 ORTHO05D005734 1.0e-104 384.4 413 51.3
Potri.010G159100 Populus trichocarpa HOM05D004724 ORTHO05D005734 1.3e-104 384.0 418 53.6
ECA233G5398 Erigeron canadensis HOM05D004724 ORTHO05D005734 1.7e-104 383.6 376 56.1
SGA_v2.0_scaffold16G07777 Striga asiatica HOM05D004724 ORTHO05D005734 1.7e-104 383.6 413 52.5
FvH4_4g30160 Fragaria vesca HOM05D004724 ORTHO05D005734 6.5e-104 381.7 416 52.4
CANSAT64G0483 Cannabis sativa HOM05D004724 ORTHO05D005734 9.4e-103 377.9 419 52.5
COL.COLO4_27896 Corchorus olitorius HOM05D004724 ORTHO05D005734 9.4e-103 377.9 411 51.6
AL1G39280 Arabidopsis lyrata HOM05D004724 ORTHO05D005734 2.1e-102 376.7 419 51.6
EL10Ac6g14982 Beta vulgaris HOM05D004724 ORTHO05D005734 2.7e-102 376.3 413 51.1
Carub.0001s2456 Capsella rubella HOM05D004724 ORTHO05D005734 4.7e-102 375.6 419 51.3
Cc11_g12080 Coffea canephora HOM05D004724 ORTHO05D005734 1.8e-101 373.6 417 51.1
ATR0064G103 Amborella trichopoda HOM05D004724 ORTHO05D005734 3.0e-101 372.9 372 55.4
THA.LOC104805036 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 1.1e-100 370.9 412 51.0
BraA09t39487Z Brassica rapa HOM05D004724 ORTHO05D005734 4.4e-100 369.0 422 49.5
A09p39880 Brassica napus HOM05D004724 ORTHO05D005734 7.4e-100 368.2 422 49.5
Thhalv10007071m.g Eutrema salsugineum HOM05D004724 ORTHO05D005734 7.4e-100 368.2 415 51.3
C05p24540 Brassica napus HOM05D004724 ORTHO05D005734 1.3e-99 367.5 422 49.5
DCAR_027471 Daucus carota HOM05D004724 ORTHO05D005734 1.4e-98 364.0 431 49.2
FAN12G2645 Fragaria x ananassa HOM05D004724 ORTHO05D005734 2.0e-97 360.1 416 50.7
FAN22G1297 Fragaria x ananassa HOM05D004724 ORTHO05D005734 2.0e-97 360.1 422 49.8
Migut.L01196 Erythranthe guttata HOM05D004724 ORTHO05D005734 2.2e-96 356.7 417 50.6
HPP92_009526 Vanilla planifolia HOM05D004724 ORTHO05D005734 1.2e-94 350.9 439 47.4
HPP92_009555 Vanilla planifolia HOM05D004724 ORTHO05D005734 6.1e-94 348.6 439 47.2
Sabra10G0120800 Salix brachista HOM05D004724 ORTHO05D005734 2.3e-93 346.7 418 49.5
arahy.Tifrunner.gnm1.ann1.06XI8G Arachis hypogaea HOM05D004724 ORTHO05D005734 3.9e-93 345.9 413 49.4
arahy.Tifrunner.gnm1.ann1.CTA0UQ Arachis hypogaea HOM05D004724 ORTHO05D005734 1.5e-92 344.0 412 49.3
Phvul.003G043100 Phaseolus vulgaris HOM05D004724 ORTHO05D005734 3.5e-89 332.8 414 48.1
CiPaw.06G092100 Carya illinoinensis HOM05D004724 ORTHO05D005734 1.1e-87 327.8 398 49.7
FAN07G2095 Fragaria x ananassa HOM05D004724 ORTHO05D005734 2.5e-87 326.6 422 47.2
Psat2g129640 Pisum sativum HOM05D004724 ORTHO05D005734 9.4e-87 324.7 272 63.6
Os07g0599000 Oryza sativa ssp. japonica HOM05D004724 ORTHO05D005734 1.6e-86 323.9 366 48.9
Zm00001eb108470 Zea mays HOM05D004724 ORTHO05D005734 1.0e-85 321.2 370 47.8
FAN17G2607 Fragaria x ananassa HOM05D004724 ORTHO05D005734 5.7e-84 315.5 432 45.6
Hund25184 Selenicereus undatus HOM05D004724 ORTHO05D005734 1.3e-83 314.3 380 48.7
Zm00001eb326730 Zea mays HOM05D004724 ORTHO05D005734 1.4e-82 310.8 365 47.1
Solyc05g012390.4 Solanum lycopersicum HOM05D004724 ORTHO05D005734 2.7e-81 306.6 325 49.8
CDE04G2698 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 7.7e-81 305.1 422 42.4
Aqoxy3G03611 Aquilegia oxysepala HOM05D004724 ORTHO05D005734 1.0e-80 304.7 373 47.5
SGA_v2.0_scaffold287G47167 Striga asiatica HOM05D004724 ORTHO05D005734 6.8e-77 292.0 283 57.6
VMungo1215G0095 Vigna mungo HOM05D004724 ORTHO05D005734 1.3e-75 287.7 410 43.9
DCAR_027465 Daucus carota HOM05D004724 ORTHO05D005734 2.4e-74 283.5 336 49.1
SHI32884 Sapria himalayana HOM05D004724 ORTHO05D005734 1.4e-61 241.1 247 53.4
SEGI_02789 Sequoiadendron giganteum HOM05D004724 ORTHO05D005734 5.2e-53 212.6 234 49.6
GSVIVG01028487001 Vitis vinifera HOM05D004724 ORTHO05D005734 4.9e-51 206.1 226 52.7
EL10Ac5g12464 Beta vulgaris HOM05D004724 ORTHO05D005734 6.4e-51 205.7 254 46.5
Cpa.g.sc1.117 Carica papaya HOM05D004724 ORTHO05D005734 3.2e-50 203.4 192 57.8
GSVIVG01021735001 Vitis vinifera HOM05D004724 ORTHO05D005734 3.5e-49 199.9 226 52.7
Ah.02g126900 Amaranthus hybridus HOM05D004724 ORTHO05D005734 3.5e-41 173.3 234 44.0
AagrBONN_evm.TU.Sc2ySwM_117.2858 Anthoceros agrestis HOM05D004724 ORTHO05D005734 1.1e-39 168.3 359 29.2
Mapoly0002s0313 Marchantia polymorpha HOM05D004724 ORTHO05D005734 4.3e-39 166.4 360 29.4
SHI32782 Sapria himalayana HOM05D004724 ORTHO05D005734 3.6e-38 163.3 415 31.1
CDE07G1937 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 8.1e-38 162.2 240 41.7
Actinidia32302 Actinidia chinensis HOM05D004724 ORTHO05D005734 2.6e-36 157.1 143 62.9
GSVIVG01009940001 Vitis vinifera HOM05D004724 ORTHO05D005734 2.5e-31 140.6 98 69.4
SHI32882 Sapria himalayana HOM05D004724 ORTHO05D005734 1.6e-30 137.9 174 46.6
Nitab4.5_0011966g0020 Nicotiana tabacum HOM05D004724 ORTHO05D005734 1.4e-29 134.8 324 30.2
Medtr6g024415 Medicago truncatula HOM05D004724 ORTHO05D005734 1.3e-24 118.2 108 58.3
Pp3c1_28760 Physcomitrium patens HOM05D004724 ORTHO05D005734 2.3e-24 117.5 368 23.9
Pp3c14_20030 Physcomitrium patens HOM05D004724 ORTHO05D005734 3.0e-24 117.1 398 26.1
Actinidia32301 Actinidia chinensis HOM05D004724 ORTHO05D005734 1.4e-21 108.2 99 59.6
Actinidia32300 Actinidia chinensis HOM05D004724 ORTHO05D007268 1.2e-20 105.1 121 50.4
Ah.02g126910 Amaranthus hybridus HOM05D004724 ORTHO05D005734 8.4e-19 99.0 107 48.6
CBR_g55790 Chara braunii HOM05D004724 ORTHO05D005734 1.1e-18 98.6 373 21.7
C07p19370 Brassica napus HOM05D004724 ORTHO05D005734 6.9e-13 79.3 85 45.9
SEGI_03319 Sequoiadendron giganteum HOM05D004724 ORTHO05D005734 9.0e-13 79.0 96 40.6
CDE07G0543 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 4.9e-11 73.2 65 53.8
Hma1.2p1_0477F.1_g160970 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 1.6e-09 68.2 43 69.8
Hma1.2p1_1953F.1_g308830 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 1.6e-09 68.2 43 69.8
A07p12930 Brassica napus HOM05D004724 ORTHO05D005734 7.9e-09 65.9 68 48.5
BraA07t29066Z Brassica rapa HOM05D004724 ORTHO05D005734 7.9e-09 65.9 68 48.5
Gohir.D12G165066 Gossypium hirsutum HOM05D004724 ORTHO05D005734 7.9e-09 65.9 56 53.6
BolC7t42456H Brassica oleracea HOM05D004724 ORTHO05D005734 8.7e-08 62.4 68 47.1
Hma1.2p1_0820F.1_g223970 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 1.5e-07 61.6 37 78.4


User provided reference genes

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