Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037675 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 1.4e-44 182.6 91 100.0
CSS0039007 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 6.4e-34 147.1 100 78.0
CSS0011416 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 4.2e-33 144.4 74 97.3
Lalb_Chr15g0084391 Lupinus albus HOM05D004100 ORTHO05D004781 6.7e-31 137.1 74 87.8
Lalb_Chr18g0052831 Lupinus albus HOM05D004100 ORTHO05D004781 6.7e-31 137.1 74 87.8
Glyma.18G031200 Glycine max HOM05D004100 ORTHO05D004781 8.7e-31 136.7 74 89.2
Glyma.11G226100 Glycine max HOM05D004100 ORTHO05D004781 1.9e-30 135.6 74 87.8
Phvul.001G239400 Phaseolus vulgaris HOM05D004100 ORTHO05D004781 1.9e-30 135.6 73 90.4
GSVIVG01016389001 Vitis vinifera HOM05D004100 ORTHO05D004781 2.5e-30 135.2 74 87.8
arahy.Tifrunner.gnm1.ann1.YUBK9J Arachis hypogaea HOM05D004100 ORTHO05D004781 4.3e-30 134.4 73 90.4
Gohir.A05G346300 Gossypium hirsutum HOM05D004100 ORTHO05D004781 4.3e-30 134.4 74 86.5
CiPaw.01G294400 Carya illinoinensis HOM05D004100 ORTHO05D004781 5.6e-30 134.0 74 87.8
Sed0020785 Sechium edule HOM05D004100 ORTHO05D004781 7.4e-30 133.7 74 86.5
Gohir.D04G065900 Gossypium hirsutum HOM05D004100 ORTHO05D004781 2.1e-29 132.1 74 83.8
Gorai.012G074300 Gossypium raimondii HOM05D004100 ORTHO05D004781 2.1e-29 132.1 74 83.8
Thecc.10G028200 Theobroma cacao HOM05D004100 ORTHO05D004781 2.1e-29 132.1 74 82.4
Duzib114G0906 Durio zibethinus HOM05D004100 ORTHO05D004781 2.8e-29 131.7 74 82.4
RcHm_v2.0_Chr1g0369131 Rosa chinensis HOM05D004100 ORTHO05D004781 3.7e-29 131.3 74 83.8
Ca_05921_v3 Cicer arietinum L. HOM05D004100 ORTHO05D004781 1.1e-28 129.8 74 85.1
Phvul.008G227500 Phaseolus vulgaris HOM05D004100 ORTHO05D004781 1.1e-28 129.8 74 83.8
Sed0001470 Sechium edule HOM05D004100 ORTHO05D004781 1.1e-28 129.8 74 85.1
Ciclev10010082m.g Citrus clementina HOM05D004100 ORTHO05D004781 1.8e-28 129.0 74 81.1
COL.COLO4_25607 Corchorus olitorius HOM05D004100 ORTHO05D004781 2.4e-28 128.6 75 82.7
Potri.010G194400 Populus trichocarpa HOM05D004100 ORTHO05D004781 3.1e-28 128.3 74 82.4
Gohir.D13G018200 Gossypium hirsutum HOM05D004100 ORTHO05D004781 4.0e-28 127.9 74 79.7
Potri.008G063000 Populus trichocarpa HOM05D004100 ORTHO05D004781 4.0e-28 127.9 74 81.1
TWI63G1110 Tripterygium wilfordii HOM05D004100 ORTHO05D004781 4.0e-28 127.9 74 82.4
CiPaw.02G189000 Carya illinoinensis HOM05D004100 ORTHO05D004781 5.3e-28 127.5 74 85.1
FvH4_7g23790 Fragaria vesca HOM05D004100 ORTHO05D004781 6.9e-28 127.1 74 82.4
Duzib128G1203 Durio zibethinus HOM05D004100 ORTHO05D004781 9.0e-28 126.7 74 81.1
Eucgr.E00256 Eucalyptus grandis HOM05D004100 ORTHO05D004781 9.0e-28 126.7 74 81.1
Glyma.02G253300 Glycine max HOM05D004100 ORTHO05D004781 1.2e-27 126.3 74 83.8
Gohir.A13G017100 Gossypium hirsutum HOM05D004100 ORTHO05D004781 1.2e-27 126.3 74 78.4
Glyma.14G063100 Glycine max HOM05D004100 ORTHO05D004781 2.0e-27 125.6 74 82.4
Lalb_Chr04g0250821 Lupinus albus HOM05D004100 ORTHO05D004781 2.0e-27 125.6 74 78.4
Manes.10G019000 Manihot esculenta HOM05D004100 ORTHO05D004781 2.0e-27 125.6 74 78.4
ClCG11G006500 Citrullus lanatus HOM05D004100 ORTHO05D004781 2.6e-27 125.2 73 83.6
Gorai.013G020200 Gossypium raimondii HOM05D004100 ORTHO05D004781 2.6e-27 125.2 74 78.4
Medtr5g081650 Medicago truncatula HOM05D004100 ORTHO05D004781 2.6e-27 125.2 74 82.4
Manes.07G124300 Manihot esculenta HOM05D004100 ORTHO05D004781 3.4e-27 124.8 74 79.7
PSO384G2084 Papaver somniferum HOM05D004100 ORTHO05D004781 3.4e-27 124.8 74 79.7
PSO585G0025 Papaver somniferum HOM05D004100 ORTHO05D004781 3.4e-27 124.8 74 79.7
TPR.G8047 Trifolium pratense HOM05D004100 ORTHO05D004781 3.4e-27 124.8 74 81.1
Migut.F01567 Erythranthe guttata HOM05D004100 ORTHO05D004781 5.8e-27 124.0 75 80.0
Sc11g0006410 Simmondsia chinensis HOM05D004100 ORTHO05D004781 5.8e-27 124.0 74 82.4
Prupe.2G244600 Prunus persica HOM05D004100 ORTHO05D004781 1.7e-26 122.5 74 78.4
SalBow1G1269 Salvia bowleyana HOM05D004100 ORTHO05D004781 1.7e-26 122.5 74 79.7
SalBow6G6247 Salvia bowleyana HOM05D004100 ORTHO05D004781 1.7e-26 122.5 75 77.3
Sed0017691 Sechium edule HOM05D004100 ORTHO05D004781 2.2e-26 122.1 73 83.6
GSVIVG01013495001 Vitis vinifera HOM05D004100 ORTHO05D004781 2.2e-26 122.1 74 78.4
DCAR_027562 Daucus carota HOM05D004100 ORTHO05D004781 2.9e-26 121.7 74 79.7
Sabra10G0149500 Salix brachista HOM05D004100 ORTHO05D004781 2.9e-26 121.7 74 78.4
Psat2g035960 Pisum sativum HOM05D004100 ORTHO05D004781 4.9e-26 120.9 73 80.8
MSTRG.234 Avicennia marina HOM05D004100 ORTHO05D004781 8.4e-26 120.2 74 77.0
Hma1.2p1_0026F.1_g016830 Hydrangea macrophylla HOM05D004100 ORTHO05D004781 1.4e-25 119.4 74 75.7
arahy.Tifrunner.gnm1.ann1.0J6FIX Arachis hypogaea HOM05D004100 ORTHO05D004781 2.5e-25 118.6 73 79.5
arahy.Tifrunner.gnm1.ann1.7Y0XMR Arachis hypogaea HOM05D004100 ORTHO05D004781 2.5e-25 118.6 73 79.5
Hma1.2p1_0026F.1_g016860 Hydrangea macrophylla HOM05D004100 ORTHO05D004781 2.5e-25 118.6 74 74.3
Lj6g0000528 Lotus japonicus HOM05D004100 ORTHO05D004781 2.5e-25 118.6 74 75.7
Nn6g33749 Nelumbo nucifera HOM05D004100 ORTHO05D004781 2.5e-25 118.6 74 75.7
CDE05G3529 Ceratophyllum demersum HOM05D004100 ORTHO05D004781 3.2e-25 118.2 74 77.0
PGR044G2436 Punica granatum HOM05D004100 ORTHO05D004781 3.2e-25 118.2 74 75.7
TAR369G1064 Trochodendron aralioides HOM05D004100 ORTHO05D004781 4.2e-25 117.9 74 77.0
Solyc08g082695.1 Solanum lycopersicum HOM05D004100 ORTHO05D004781 5.5e-25 117.5 73 76.7
Sopen08g030920 Solanum pennellii HOM05D004100 ORTHO05D004781 5.5e-25 117.5 73 76.7
unitig_0.g234 Utricularia gibba HOM05D004100 ORTHO05D004781 5.5e-25 117.5 74 74.3
Migut.I01038 Erythranthe guttata HOM05D004100 ORTHO05D004781 1.2e-24 116.3 74 73.0
Eucgr.G03237 Eucalyptus grandis HOM05D004100 ORTHO05D004781 1.2e-24 116.3 74 75.7
Nn2g11332 Nelumbo nucifera HOM05D004100 ORTHO05D004781 1.6e-24 115.9 74 77.0
CAN.G567.29 Capsicum annuum HOM05D004100 ORTHO05D004781 2.1e-24 115.5 73 75.3
Lsat_1_v5_gn_1_35860 Lactuca sativa HOM05D004100 ORTHO05D004781 2.1e-24 115.5 74 73.0
Oeu055822.1 Olea europaea HOM05D004100 ORTHO05D004781 2.1e-24 115.5 74 74.3
Os09g0326850 Oryza sativa ssp. japonica HOM05D004100 ORTHO05D004781 2.1e-24 115.5 75 74.7
HanXRQChr07g0202251 Helianthus annuus HOM05D004100 ORTHO05D004781 2.7e-24 115.2 74 73.0
Nn2g13575 Nelumbo nucifera HOM05D004100 ORTHO05D004781 3.5e-24 114.8 74 74.3
Cc02_g07040 Coffea canephora HOM05D004100 ORTHO05D004781 6.0e-24 114.0 73 74.0
Ah.10g030410 Amaranthus hybridus HOM05D004100 ORTHO05D004781 1.8e-23 112.5 74 70.3
Aqoxy2G00841 Aquilegia oxysepala HOM05D004100 ORTHO05D004781 1.8e-23 112.5 74 71.6
arahy.Tifrunner.gnm1.ann1.97IM7W Arachis hypogaea HOM05D004100 ORTHO05D004781 1.8e-23 112.5 73 75.3
CSS0048931 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 2.3e-23 112.1 74 70.3
Actinidia07713 Actinidia chinensis HOM05D004100 ORTHO05D004781 3.9e-23 111.3 74 71.6
Actinidia13907 Actinidia chinensis HOM05D004100 ORTHO05D004781 3.9e-23 111.3 74 71.6
ECA238G3287 Erigeron canadensis HOM05D004100 ORTHO05D004781 3.9e-23 111.3 74 71.6
Aqoxy6G01946 Aquilegia oxysepala HOM05D004100 ORTHO05D004781 1.5e-22 109.4 74 70.3
vmacro10075 Vaccinium macrocarpon HOM05D004100 ORTHO05D004781 1.5e-22 109.4 74 73.0
Rhsim09G0171200 Rhododendron simsii HOM05D004100 ORTHO05D004781 1.9e-22 109.0 74 71.6
vmacro16617 Vaccinium macrocarpon HOM05D004100 ORTHO05D004781 3.3e-22 108.2 74 71.6
CAN.G689.7 Capsicum annuum HOM05D004100 ORTHO05D004781 5.7e-22 107.5 74 66.2
TAR623G1136 Trochodendron aralioides HOM05D004100 ORTHO05D004781 9.7e-22 106.7 74 68.9
Phvul.010G006600 Phaseolus vulgaris HOM05D004100 ORTHO05D004781 2.8e-21 105.1 74 68.9
THA.LOC104805700 Tarenaya hassleriana HOM05D004100 ORTHO05D004781 3.7e-21 104.8 74 64.9
Manes.08G084000 Manihot esculenta HOM05D004100 ORTHO05D004781 4.8e-21 104.4 74 63.5
Glyma.01G109600 Glycine max HOM05D004100 ORTHO05D004781 6.3e-21 104.0 74 67.6
Glyma.03G074700 Glycine max HOM05D004100 ORTHO05D004781 6.3e-21 104.0 74 67.6
TWI53G1956 Tripterygium wilfordii HOM05D004100 ORTHO05D004781 6.3e-21 104.0 74 64.9
Duzib128G0469 Durio zibethinus HOM05D004100 ORTHO05D004781 8.2e-21 103.6 74 63.5
Gorai.012G110700 Gossypium raimondii HOM05D004100 ORTHO05D004781 8.2e-21 103.6 74 63.5
Rhsim03G0139100 Rhododendron simsii HOM05D004100 ORTHO05D004781 8.2e-21 103.6 74 67.6
TWI74G1404 Tripterygium wilfordii HOM05D004100 ORTHO05D004781 1.4e-20 102.8 74 63.5
Duzib093G2045 Durio zibethinus HOM05D004100 ORTHO05D004781 1.8e-20 102.4 74 62.2
Os03g0331900 Oryza sativa ssp. japonica HOM05D004100 ORTHO05D004781 1.8e-20 102.4 75 65.3
Medtr4g019160 Medicago truncatula HOM05D004100 ORTHO05D004781 2.4e-20 102.1 74 66.2
TPR.G8216 Trifolium pratense HOM05D004100 ORTHO05D004781 3.1e-20 101.7 74 66.2
Thecc.05G024300 Theobroma cacao HOM05D004100 ORTHO05D004781 4.1e-20 101.3 74 63.5
CANSAT35G1936 Cannabis sativa HOM05D004100 ORTHO05D004781 5.3e-20 100.9 75 65.3
Gohir.D04G127700 Gossypium hirsutum HOM05D004100 ORTHO05D004781 5.3e-20 100.9 74 63.5
Potri.016G109500 Populus trichocarpa HOM05D004100 ORTHO05D004781 5.3e-20 100.9 74 63.5
Atru.chr8.2126 Acer truncatum HOM05D004100 ORTHO05D004781 6.9e-20 100.5 74 62.2
CiPaw.10G153500 Carya illinoinensis HOM05D004100 ORTHO05D004781 6.9e-20 100.5 74 63.5
Gohir.A04G087300 Gossypium hirsutum HOM05D004100 ORTHO05D004781 6.9e-20 100.5 75 61.3
Prupe.6G268700 Prunus persica HOM05D004100 ORTHO05D004781 9.0e-20 100.1 74 64.9
MD12G1158300 Malus domestica HOM05D004100 ORTHO05D004781 1.2e-19 99.8 74 59.5
PGR031G0718 Punica granatum HOM05D004100 ORTHO05D004781 1.5e-19 99.4 74 63.5
CiPaw.09G204500 Carya illinoinensis HOM05D004100 ORTHO05D004781 2.0e-19 99.0 74 62.2
MD04G1144200 Malus domestica HOM05D004100 ORTHO05D004781 2.6e-19 98.6 74 59.5
THA.LOC104816861 Tarenaya hassleriana HOM05D004100 ORTHO05D004781 4.5e-19 97.8 74 62.2
HPP92_003287 Vanilla planifolia HOM05D004100 ORTHO05D004781 4.5e-19 97.8 63 76.2
BcaB01g03736 Brassica carinata HOM05D000076 ORTHO05D001377 7.6e-19 97.1 75 60.0
BolC3t14861H Brassica oleracea HOM05D000076 ORTHO05D001377 7.6e-19 97.1 75 60.0
BraA03t11338Z Brassica rapa HOM05D000076 ORTHO05D001377 7.6e-19 97.1 75 60.0
Ciclev10013247m.g Citrus clementina HOM05D004100 ORTHO05D004781 7.6e-19 97.1 74 60.8
Thhalv10017760m.g Eutrema salsugineum HOM05D004100 ORTHO05D004781 7.6e-19 97.1 75 61.3
FvH4_6g12280 Fragaria vesca HOM05D004100 ORTHO05D004781 7.6e-19 97.1 74 63.5
Sabra16G0106200 Salix brachista HOM05D004100 ORTHO05D004781 7.6e-19 97.1 74 59.5
Sp4g20290 Schrenkiella parvula HOM05D004100 ORTHO05D004781 7.6e-19 97.1 75 60.0
A04p29120 Brassica napus HOM05D004100 ORTHO05D004781 1.0e-18 96.7 75 60.0
BolC4t28139H Brassica oleracea HOM05D000076 ORTHO05D001377 1.0e-18 96.7 75 60.0
BraA04t18382Z Brassica rapa HOM05D000076 ORTHO05D001377 1.0e-18 96.7 75 60.0
FAN09G3480 Fragaria x ananassa HOM05D004100 ORTHO05D004781 1.0e-18 96.7 74 63.5
Aa31sc250G10 Aethionema arabicum HOM05D004100 ORTHO05D004781 1.7e-18 95.9 74 60.8
BcaB02g09230 Brassica carinata HOM05D004100 ORTHO05D004781 1.7e-18 95.9 75 60.0
BraA05t19768Z Brassica rapa HOM05D004100 ORTHO05D004781 1.7e-18 95.9 75 60.0
Carub.0004s1994 Capsella rubella HOM05D004100 ORTHO05D004781 2.2e-18 95.5 75 60.0
CARHR132530 Cardamine hirsuta HOM05D004100 ORTHO05D004781 2.2e-18 95.5 75 60.0
CARHR150630 Cardamine hirsuta HOM05D004100 ORTHO05D004781 2.2e-18 95.5 75 60.0
AL4G34950 Arabidopsis lyrata HOM05D004100 ORTHO05D004781 2.9e-18 95.1 75 60.0
AT2G37975 Arabidopsis thaliana HOM05D004100 ORTHO05D004781 2.9e-18 95.1 75 60.0
AL5G35090 Arabidopsis lyrata HOM05D004100 ORTHO05D004781 3.8e-18 94.7 75 61.3
Cfa017271 Carpinus fangiana HOM05D004100 ORTHO05D004781 3.8e-18 94.7 74 59.5
Carub.0005s2067 Capsella rubella HOM05D004100 ORTHO05D004781 5.0e-18 94.4 75 60.0
Mapoly0015s0116 Marchantia polymorpha HOM05D004100 ORTHO05D004781 5.0e-18 94.4 74 56.8
ClCG10G021700 Citrullus lanatus HOM05D004100 ORTHO05D004781 6.5e-18 94.0 74 60.8
RcHm_v2.0_Chr3g0464081 Rosa chinensis HOM05D004100 ORTHO05D004781 8.5e-18 93.6 74 59.5
QL07p036366 Quercus lobata HOM05D004100 ORTHO05D004781 1.4e-17 92.8 74 59.5
Aa31sc516G30 Aethionema arabicum HOM05D004100 ORTHO05D004781 1.9e-17 92.4 74 59.5
FAN01G2433 Fragaria x ananassa HOM05D004100 ORTHO05D004781 1.9e-17 92.4 56 76.8
AT3G54085 Arabidopsis thaliana HOM05D004100 ORTHO05D004781 2.5e-17 92.0 75 60.0
FAN03G0295 Fragaria x ananassa HOM05D004100 ORTHO05D004781 2.5e-17 92.0 52 80.8
CARHR163970 Cardamine hirsuta HOM05D004100 ORTHO05D004781 3.2e-17 91.7 75 58.7
ECA247G3878 Erigeron canadensis HOM05D001920 ORTHO05D004895 4.2e-17 91.3 58 74.1
A09p47070 Brassica napus HOM05D004100 ORTHO05D004781 5.5e-17 90.9 75 58.7
Psat7g242160 Pisum sativum HOM05D004100 ORTHO05D004781 1.2e-16 89.7 78 56.4
Prupe.6G268600 Prunus persica HOM05D004100 ORTHO05D004781 1.2e-16 89.7 73 57.5
arahy.Tifrunner.gnm1.ann1.R21D2Y Arachis hypogaea HOM05D004100 ORTHO05D004781 1.6e-16 89.4 52 78.8
Thhalv10010931m.g Eutrema salsugineum HOM05D004100 ORTHO05D004781 2.1e-16 89.0 75 56.0
arahy.Tifrunner.gnm1.ann1.0IJH0T Arachis hypogaea HOM05D004100 ORTHO05D087279 2.7e-16 88.6 51 80.4
C08p29320 Brassica napus HOM05D004100 ORTHO05D004781 6.1e-16 87.4 75 56.0
Pp3c6_2550 Physcomitrium patens HOM05D004100 ORTHO05D004781 6.1e-16 87.4 74 56.8
Pp3c5_27310 Physcomitrium patens HOM05D004100 ORTHO05D004781 7.9e-16 87.0 74 55.4
MELO3C009201.2 Cucumis melo HOM05D004100 ORTHO05D004781 1.4e-15 86.3 74 54.1
Ah.12g057400 Amaranthus hybridus HOM05D004100 ORTHO05D004781 2.3e-15 85.5 74 56.8
Ah.02g116480 Amaranthus hybridus HOM05D004100 ORTHO05D004781 3.0e-15 85.1 74 56.8
SMO117G0142 Selaginella moellendorffii HOM05D004100 ORTHO05D004781 8.8e-15 83.6 67 58.2
BcaNung06516 Brassica carinata HOM05D004100 ORTHO05D004781 1.9e-14 82.4 74 55.4
AUR62013833 Chenopodium quinoa HOM05D004100 ORTHO05D004781 2.2e-13 79.0 68 60.3
Sed0010532 Sechium edule HOM05D004100 ORTHO05D004781 4.8e-13 77.8 74 51.4
FAN06G1577 Fragaria x ananassa HOM05D004100 ORTHO05D004781 9.1e-12 73.6 41 82.9
Atru.chr8.2168 Acer truncatum HOM05D004100 ORTHO05D004781 2.6e-11 72.0 58 55.2
LjContig00141g0009471 Lotus japonicus HOM05D004100 ORTHO05D004781 2.6e-11 72.0 49 63.3
Actinidia27826 Actinidia chinensis HOM05D004100 ORTHO05D004781 4.5e-11 71.2 38 86.8
FAN06G2089 Fragaria x ananassa HOM05D004100 ORTHO05D004781 4.5e-11 71.2 40 82.5
MCO12G437 Micromonas commoda HOM05D004100 ORTHO05D004781 4.2e-09 64.7 76 47.4
BcaC02g11939 Brassica carinata HOM05D004100 ORTHO05D004781 2.1e-08 62.4 45 64.4
AUR62037182 Chenopodium quinoa HOM05D004100 ORTHO05D004781 6.1e-08 60.8 69 49.3
Cre06.g299750 Chlamydomonas reinhardtii HOM05D004100 ORTHO05D004781 3.0e-07 58.5 74 43.2
PRCOL_00003613 Prasinoderma coloniale HOM05D004100 ORTHO05D004781 1.1e-06 56.6 76 42.1


User provided reference genes

Program Settings