Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002657 Camellia sinensis var. sinensis HOM05D007944 ORTHO05D010014 3.1e-23 110.9 55 100.0
CSS0037671 Camellia sinensis var. sinensis HOM05D007944 ORTHO05D010014 3.1e-23 110.9 55 100.0
Thecc.03G102900 Theobroma cacao HOM05D007944 ORTHO05D010014 2.1e-19 98.2 55 85.5
Gohir.D03G096800 Gossypium hirsutum HOM05D007944 ORTHO05D010014 6.0e-19 96.7 55 83.6
Gorai.003G101600 Gossypium raimondii HOM05D007944 ORTHO05D010014 6.0e-19 96.7 55 83.6
COL.COLO4_24344 Corchorus olitorius HOM05D007944 ORTHO05D010014 7.9e-19 96.3 55 80.0
Duzib084G0160 Durio zibethinus HOM05D007944 ORTHO05D010014 7.9e-19 96.3 55 83.6
Gohir.A03G070400 Gossypium hirsutum HOM05D007944 ORTHO05D010014 1.8e-18 95.1 55 81.8
Manes.06G083900 Manihot esculenta HOM05D007944 ORTHO05D010014 2.3e-18 94.7 55 78.2
Hma1.2p1_0060F.1_g033020 Hydrangea macrophylla HOM05D007944 ORTHO05D010014 3.0e-18 94.4 55 80.0
THA.LOC104818349 Tarenaya hassleriana HOM05D007944 ORTHO05D010014 3.9e-18 94.0 55 80.0
HanXRQChr04g0110041 Helianthus annuus HOM05D007944 ORTHO05D010014 5.1e-18 93.6 55 80.0
PGSC0003DMG400024536 Solanum tuberosum HOM05D007944 ORTHO05D010014 8.7e-18 92.8 55 80.0
GSVIVG01008105001 Vitis vinifera HOM05D007944 ORTHO05D010014 1.1e-17 92.4 55 76.4
PGR083G1417 Punica granatum HOM05D007944 ORTHO05D010014 1.9e-17 91.7 55 76.4
Ciclev10023235m.g Citrus clementina HOM05D007944 ORTHO05D010014 2.5e-17 91.3 55 76.4
Potri.015G058500 Populus trichocarpa HOM05D007944 ORTHO05D010014 4.3e-17 90.5 55 76.4
THA.LOC109116171 Tarenaya hassleriana HOM05D007944 ORTHO05D010014 1.3e-16 89.0 55 74.5
AL6G18390 Arabidopsis lyrata HOM05D007944 ORTHO05D010014 1.6e-16 88.6 55 69.1
Lsat_1_v5_gn_1_14420 Lactuca sativa HOM05D007944 ORTHO05D010014 2.1e-16 88.2 55 74.5
Nn3g17462 Nelumbo nucifera HOM05D007944 ORTHO05D010014 2.1e-16 88.2 55 80.0
Carub.0006s0693 Capsella rubella HOM05D007944 ORTHO05D010014 1.1e-15 85.9 55 67.3
Prupe.5G206000 Prunus persica HOM05D007944 ORTHO05D010014 1.4e-15 85.5 55 78.2
Duzib205G1703 Durio zibethinus HOM05D007944 ORTHO05D010014 2.4e-15 84.7 55 74.5
C02p03390 Brassica napus HOM05D007944 ORTHO05D010014 3.1e-15 84.3 55 69.1
BolC2t06301H Brassica oleracea HOM05D007944 ORTHO05D010014 3.1e-15 84.3 55 69.1
BraA02t04940Z Brassica rapa HOM05D007944 ORTHO05D010014 3.1e-15 84.3 55 69.1
BcaB05g21585 Brassica carinata HOM05D007944 ORTHO05D010014 4.0e-15 84.0 55 67.3
C09p68880 Brassica napus HOM05D007944 ORTHO05D010014 4.0e-15 84.0 55 67.3
Migut.D01638 Erythranthe guttata HOM05D007944 ORTHO05D010014 4.0e-15 84.0 55 72.7
TWI60G0934 Tripterygium wilfordii HOM05D007944 ORTHO05D010014 4.0e-15 84.0 55 72.7
AT5G08040 Arabidopsis thaliana HOM05D007944 ORTHO05D010014 5.3e-15 83.6 55 63.6
CAN.G1228.17 Capsicum annuum HOM05D007944 ORTHO05D010014 6.9e-15 83.2 55 70.9
CiPaw.11G054400 Carya illinoinensis HOM05D007944 ORTHO05D010014 6.9e-15 83.2 55 72.7
MD06G1225800 Malus domestica HOM05D007944 ORTHO05D010014 6.9e-15 83.2 55 74.5
MD14G1212700 Malus domestica HOM05D007944 ORTHO05D010014 6.9e-15 83.2 55 74.5
BcaC03g13205 Brassica carinata HOM05D007944 ORTHO05D010014 9.0e-15 82.8 55 67.3
CARHR205140 Cardamine hirsuta HOM05D007944 ORTHO05D010014 9.0e-15 82.8 53 66.0
TAR629G2843 Trochodendron aralioides HOM05D007944 ORTHO05D010014 9.0e-15 82.8 49 75.5
Thhalv10015226m.g Eutrema salsugineum HOM05D007944 ORTHO05D010014 1.2e-14 82.4 55 65.5
Phvul.003G184100 Phaseolus vulgaris HOM05D007944 ORTHO05D010014 1.2e-14 82.4 55 67.3
BolC9t59634H Brassica oleracea HOM05D007944 ORTHO05D010014 2.0e-14 81.6 55 65.5
Sc12g0007040 Simmondsia chinensis HOM05D007944 ORTHO05D010014 2.6e-14 81.3 53 66.0
BcaB01g05682 Brassica carinata HOM05D007944 ORTHO05D010014 3.4e-14 80.9 55 65.5
Glyma.05G020300 Glycine max HOM05D007944 ORTHO05D010014 3.4e-14 80.9 55 70.9
Glyma.17G079100 Glycine max HOM05D007944 ORTHO05D010014 3.4e-14 80.9 55 70.9
BcaB08g37295 Brassica carinata HOM05D007944 ORTHO05D010014 4.5e-14 80.5 55 67.3
A03p03550 Brassica napus HOM05D007944 ORTHO05D010014 4.5e-14 80.5 55 63.6
BraA03t09705Z Brassica rapa HOM05D007944 ORTHO05D010014 4.5e-14 80.5 55 63.6
BraA10t44908Z Brassica rapa HOM05D007944 ORTHO05D010014 4.5e-14 80.5 52 67.3
ClCG04G011750 Citrullus lanatus HOM05D007944 ORTHO05D010014 4.5e-14 80.5 49 75.5
MELO3C002035.2 Cucumis melo HOM05D007944 ORTHO05D010014 4.5e-14 80.5 49 75.5
Sp6g34910 Schrenkiella parvula HOM05D000813 ORTHO05D004282 4.5e-14 80.5 53 67.9
BcaB01g05641 Brassica carinata HOM05D007944 ORTHO05D010014 5.8e-14 80.1 55 63.6
BolC3t12937H Brassica oleracea HOM05D007944 ORTHO05D010014 5.8e-14 80.1 55 63.6
CANSAT56G0188 Cannabis sativa HOM05D007944 ORTHO05D010014 5.8e-14 80.1 55 67.3
Lalb_Chr13g0302811 Lupinus albus HOM05D007944 ORTHO05D010014 1.0e-13 79.3 55 67.3
RcHm_v2.0_Chr7g0183191 Rosa chinensis HOM05D007944 ORTHO05D010014 1.0e-13 79.3 55 70.9
Medtr4g109610 Medicago truncatula HOM05D007944 ORTHO05D010014 2.2e-13 78.2 55 65.5
C03p04000 Brassica napus HOM05D007944 ORTHO05D010014 5.0e-13 77.0 55 61.8
Ca_21766_v3 Cicer arietinum L. HOM05D007944 ORTHO05D010014 8.4e-13 76.3 55 67.3
Lj4g0027267 Lotus japonicus HOM05D007944 ORTHO05D010014 1.9e-12 75.1 55 61.8
Sed0006151 Sechium edule HOM05D007944 ORTHO05D010014 1.9e-12 75.1 49 67.3
HanXRQChr02g0044781 Helianthus annuus HOM05D007944 ORTHO05D010014 2.5e-12 74.7 47 70.2
Aa31LG3G18500 Aethionema arabicum HOM05D000813 ORTHO05D004282 4.2e-12 73.9 54 61.1
Lalb_Chr12g0197241 Lupinus albus HOM05D007944 ORTHO05D010014 4.2e-12 73.9 55 61.8
Psat4g047680 Pisum sativum HOM05D007944 ORTHO05D010014 4.2e-12 73.9 55 61.8
A10p28590 Brassica napus HOM05D007944 ORTHO05D010014 2.1e-11 71.6 52 65.4
FvH4_5g13750 Fragaria vesca HOM05D007944 ORTHO05D010014 3.5e-11 70.9 50 68.0
Os12g0575200 Oryza sativa ssp. japonica HOM05D007944 ORTHO05D010014 7.9e-11 69.7 55 56.4
CsaV3_1G006040 Cucumis sativus L. HOM05D007944 ORTHO05D010014 6.7e-10 66.6 38 81.6
Aqoxy3G03680 Aquilegia oxysepala HOM05D007944 ORTHO05D010014 4.3e-09 63.9 55 58.2
Sed0010401 Sechium edule HOM05D007944 ORTHO05D010014 1.6e-08 62.0 48 56.2
Pp3c3_35330 Physcomitrium patens HOM05D007944 ORTHO05D010014 2.4e-07 58.2 49 51.0
Actinidia18986 Actinidia chinensis HOM05D007944 ORTHO05D010014 3.1e-07 57.8 52 53.8
Pp3c12_23850 Physcomitrium patens HOM05D007944 ORTHO05D010014 6.9e-07 56.6 52 46.2
unitig_744.g24380 Utricularia gibba HOM05D007944 ORTHO05D010014 2.0e-06 55.1 83 44.6
Os03g0603500 Oryza sativa ssp. japonica HOM05D007944 ORTHO05D010014 4.5e-06 53.9 55 50.9
TAR374G0214 Trochodendron aralioides HOM05D007944 ORTHO05D010014 1.0e-05 52.8 32 65.6


User provided reference genes

Program Settings