Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037660 Camellia sinensis var. sinensis HOM05D003622 ORTHO05D004453 7.0e-240 833.6 426 100.0
CSS0022552 Camellia sinensis var. sinensis HOM05D003622 ORTHO05D004453 2.4e-195 685.6 445 81.8
Dinv41474 Davidia involucrata HOM05D003622 ORTHO05D004453 8.2e-156 554.3 441 68.7
Dinv36478 Davidia involucrata HOM05D003622 ORTHO05D004453 7.9e-151 537.7 441 67.1
Actinidia21950 Actinidia chinensis HOM05D003622 ORTHO05D004453 1.9e-144 516.5 462 63.2
CSS0014966 Camellia sinensis var. sinensis HOM05D003622 ORTHO05D004453 5.5e-144 515.0 442 64.7
CSS0042071 Camellia sinensis var. sinensis HOM05D003622 ORTHO05D004453 1.1e-139 500.7 442 63.3
Atru.chr7.1951 Acer truncatum HOM05D003622 ORTHO05D004453 1.5e-133 480.3 439 59.2
Hma1.2p1_0343F.1_g130930 Hydrangea macrophylla HOM05D003622 ORTHO05D004453 5.9e-130 468.4 441 61.0
Cfa003424 Carpinus fangiana HOM05D003622 ORTHO05D004453 2.9e-129 466.1 438 58.7
vmacro06154 Vaccinium macrocarpon HOM05D003622 ORTHO05D004453 1.5e-128 463.8 443 60.7
QL02p089888 Quercus lobata HOM05D003622 ORTHO05D004453 2.5e-128 463.0 438 57.8
Duzib168G1318 Durio zibethinus HOM05D003622 ORTHO05D004453 8.8e-126 454.5 439 57.4
CiPaw.04G174900 Carya illinoinensis HOM05D003622 ORTHO05D004453 4.4e-125 452.2 438 56.2
Sabra18G0107100 Salix brachista HOM05D003622 ORTHO05D004453 8.3e-124 448.0 440 57.0
Rhsim03G0251600 Rhododendron simsii HOM05D003622 ORTHO05D004453 1.8e-123 446.8 425 61.6
Thecc.09G132400 Theobroma cacao HOM05D003622 ORTHO05D004453 2.4e-123 446.4 439 57.4
vmacro07722 Vaccinium macrocarpon HOM05D003622 ORTHO05D004453 2.4e-123 446.4 446 58.1
Cpa.g.sc46.43 Carica papaya HOM05D003622 ORTHO05D004453 4.1e-123 445.7 439 55.8
Ciclev10007427m.g Citrus clementina HOM05D003622 ORTHO05D004453 7.0e-123 444.9 439 56.3
Potri.018G126100 Populus trichocarpa HOM05D003622 ORTHO05D004453 9.1e-123 444.5 440 57.3
Manes.14G116100 Manihot esculenta HOM05D003622 ORTHO05D004453 1.2e-122 444.1 439 56.7
Rhsim01G0061400 Rhododendron simsii HOM05D003622 ORTHO05D004453 1.6e-122 443.7 444 57.7
Nitab4.5_0002008g0030 Nicotiana tabacum HOM05D003622 ORTHO05D004453 6.6e-121 438.3 442 57.0
Manes.06G047000 Manihot esculenta HOM05D003622 ORTHO05D004453 8.6e-121 438.0 440 56.1
COL.COLO4_35161 Corchorus olitorius HOM05D003622 ORTHO05D004453 1.5e-120 437.2 439 56.3
Gohir.A08G088500 Gossypium hirsutum HOM05D003622 ORTHO05D004453 3.3e-120 436.0 439 55.4
Gorai.013G235300 Gossypium raimondii HOM05D003622 ORTHO05D004453 3.3e-120 436.0 443 55.1
Potri.006G065600 Populus trichocarpa HOM05D003622 ORTHO05D004453 5.5e-120 435.3 439 55.6
Sabra06G0047800 Salix brachista HOM05D003622 ORTHO05D004453 5.5e-120 435.3 439 56.3
Glyma.17G111200 Glycine max HOM05D003622 ORTHO05D004453 7.2e-120 434.9 440 54.3
Glyma.13G160300 Glycine max HOM05D003622 ORTHO05D004453 1.2e-119 434.1 440 54.3
CiPaw.03G248700 Carya illinoinensis HOM05D003622 ORTHO05D004453 6.1e-119 431.8 444 54.7
MD02G1023300 Malus domestica HOM05D003622 ORTHO05D004453 6.1e-119 431.8 438 54.8
GSVIVG01015594001 Vitis vinifera HOM05D003622 ORTHO05D004453 8.0e-119 431.4 411 58.2
Nitab4.5_0003393g0070 Nicotiana tabacum HOM05D003622 ORTHO05D004453 1.0e-118 431.0 442 56.6
Gohir.A13G200800 Gossypium hirsutum HOM05D003622 ORTHO05D004453 1.8e-118 430.3 442 54.5
MD15G1166400 Malus domestica HOM05D003622 ORTHO05D004453 2.3e-118 429.9 438 54.3
Gohir.D08G099700 Gossypium hirsutum HOM05D003622 ORTHO05D004453 3.0e-118 429.5 439 54.9
CANSAT11G0379 Cannabis sativa HOM05D003622 ORTHO05D004453 5.2e-118 428.7 438 55.0
Duzib187G1700 Durio zibethinus HOM05D003622 ORTHO05D004453 5.2e-118 428.7 440 55.7
Gorai.004G107500 Gossypium raimondii HOM05D003622 ORTHO05D004453 5.2e-118 428.7 439 54.7
RcHm_v2.0_Chr2g0087611 Rosa chinensis HOM05D003622 ORTHO05D004453 8.9e-118 427.9 438 54.1
Gorai.010G061100 Gossypium raimondii HOM05D003622 ORTHO05D004453 2.0e-117 426.8 438 55.5
Cc06_g08050 Coffea canephora HOM05D003622 ORTHO05D004453 7.5e-117 424.9 442 54.5
Lj4g0015305 Lotus japonicus HOM05D003622 ORTHO05D004453 7.5e-117 424.9 440 52.3
VMungo1215G2226 Vigna mungo HOM05D003622 ORTHO05D004453 3.7e-116 422.5 440 53.2
Actinidia07317 Actinidia chinensis HOM05D003622 ORTHO05D004453 8.3e-116 421.4 464 55.0
Gohir.D06G052700 Gossypium hirsutum HOM05D003622 ORTHO05D004453 1.1e-115 421.0 438 54.8
Peaxi162Scf00088g01327 Petunia axillaris HOM05D003622 ORTHO05D004453 1.1e-115 421.0 442 55.9
Gohir.A06G053800 Gossypium hirsutum HOM05D003622 ORTHO05D004453 1.4e-115 420.6 437 54.7
Prupe.7G248800 Prunus persica HOM05D003622 ORTHO05D004453 2.4e-115 419.9 438 54.3
FAN26G1654 Fragaria x ananassa HOM05D003622 ORTHO05D004453 7.0e-115 418.3 438 53.2
Phvul.003G169000 Phaseolus vulgaris HOM05D003622 ORTHO05D004453 3.5e-114 416.0 440 52.3
FAN28G0611 Fragaria x ananassa HOM05D003622 ORTHO05D004453 5.9e-114 415.2 438 53.2
FvH4_1g02580 Fragaria vesca HOM05D003622 ORTHO05D004453 7.8e-114 414.8 438 53.0
FAN19G0217 Fragaria x ananassa HOM05D003622 ORTHO05D004453 7.8e-114 414.8 438 53.0
CAN.G1266.4 Capsicum annuum HOM05D003622 ORTHO05D004453 2.9e-113 412.9 442 53.8
Lalb_Chr13g0301561 Lupinus albus HOM05D003622 ORTHO05D004453 2.9e-113 412.9 441 52.8
FAN23G2517 Fragaria x ananassa HOM05D003622 ORTHO05D004453 6.6e-113 411.8 438 52.7
arahy.Tifrunner.gnm1.ann1.HD4WN1 Arachis hypogaea HOM05D003622 ORTHO05D004453 4.3e-112 409.1 440 52.3
Medtr4g115350 Medicago truncatula HOM05D003622 ORTHO05D004453 9.5e-112 407.9 440 51.8
PGSC0003DMG400030907 Solanum tuberosum HOM05D003622 ORTHO05D004453 2.8e-111 406.4 442 53.8
arahy.Tifrunner.gnm1.ann1.DJE2D0 Arachis hypogaea HOM05D003622 ORTHO05D004453 6.1e-111 405.2 440 52.3
Lalb_Chr12g0198231 Lupinus albus HOM05D003622 ORTHO05D004453 8.0e-111 404.8 440 52.3
TWI32G0590 Tripterygium wilfordii HOM05D003622 ORTHO05D004453 4.0e-110 402.5 439 52.6
TWI63G1810 Tripterygium wilfordii HOM05D003622 ORTHO05D004453 6.8e-110 401.7 441 53.1
TAR625G0175 Trochodendron aralioides HOM05D003622 ORTHO05D004453 8.9e-110 401.4 439 53.8
SalBow1G3694 Salvia bowleyana HOM05D003622 ORTHO05D004453 1.5e-109 400.6 440 53.0
TAR636G0579 Trochodendron aralioides HOM05D003622 ORTHO05D004453 1.5e-109 400.6 440 53.2
MELO3C010313.2 Cucumis melo HOM05D003622 ORTHO05D004453 3.4e-109 399.4 437 53.1
Sopen07g003790 Solanum pennellii HOM05D003622 ORTHO05D004453 7.5e-109 398.3 442 52.9
Eucgr.C01387 Eucalyptus grandis HOM05D003622 ORTHO05D004453 1.3e-108 397.5 439 53.1
CsaV3_1G026740 Cucumis sativus L. HOM05D003622 ORTHO05D004453 3.7e-108 396.0 439 52.6
Ca_06943_v3 Cicer arietinum L. HOM05D003622 ORTHO05D004453 4.9e-108 395.6 441 51.9
Solyc07g007890.3 Solanum lycopersicum HOM05D003622 ORTHO05D004453 6.4e-108 395.2 442 52.7
TWI34G1661 Tripterygium wilfordii HOM05D003622 ORTHO05D004453 1.1e-107 394.4 439 51.7
Sed0001481 Sechium edule HOM05D003622 ORTHO05D004453 1.4e-107 394.0 441 52.6
ClCG06G011530 Citrullus lanatus HOM05D003622 ORTHO05D004453 4.1e-107 392.5 440 51.8
Lalb_Chr11g0072261 Lupinus albus HOM05D003622 ORTHO05D004453 1.6e-106 390.6 440 50.9
Oeu056946.1 Olea europaea HOM05D003622 ORTHO05D004453 2.0e-106 390.2 439 51.5
MBI13_g37002_MAGBIO Magnolia biondii HOM05D003622 ORTHO05D004453 1.0e-105 387.9 449 50.6
SalBow6G3081 Salvia bowleyana HOM05D003622 ORTHO05D004453 5.0e-105 385.6 443 52.1
Lalb_Chr07g0179261 Lupinus albus HOM05D003622 ORTHO05D004453 6.6e-105 385.2 440 49.3
DCAR_020889 Daucus carota HOM05D003622 ORTHO05D004453 1.1e-104 384.4 441 52.2
DCAR_009323 Daucus carota HOM05D003622 ORTHO05D004453 1.9e-104 383.6 442 52.0
Psat0s188g0040 Pisum sativum HOM05D003622 ORTHO05D004453 1.9e-104 383.6 440 51.1
TPR.G24803 Trifolium pratense HOM05D003622 ORTHO05D004453 2.8e-103 379.8 445 50.1
Sc08g0006260 Simmondsia chinensis HOM05D003622 ORTHO05D004453 5.2e-102 375.6 441 50.3
Oeu052762.1 Olea europaea HOM05D003622 ORTHO05D004453 1.2e-101 374.4 414 53.1
Hund09284 Selenicereus undatus HOM05D003622 ORTHO05D004453 5.8e-101 372.1 437 50.3
MSTRG.26437 Avicennia marina HOM05D003622 ORTHO05D004453 2.9e-100 369.8 451 50.3
AUR62011177 Chenopodium quinoa HOM05D003622 ORTHO05D004453 6.4e-100 368.6 440 50.2
AUR62013307 Chenopodium quinoa HOM05D003622 ORTHO05D004453 3.2e-99 366.3 440 50.0
SGA_v2.0_scaffold63G21826 Striga asiatica HOM05D003622 ORTHO05D004453 6.0e-98 362.1 450 50.4
PSO170G2238 Papaver somniferum HOM05D003622 ORTHO05D004453 3.9e-97 359.4 440 48.6
EL10Ac8g18721 Beta vulgaris HOM05D003622 ORTHO05D004453 3.6e-95 352.8 459 48.6
PSO017G7291 Papaver somniferum HOM05D003622 ORTHO05D004453 4.7e-95 352.4 440 48.2
PGR102G2297 Punica granatum HOM05D003622 ORTHO05D004453 6.2e-95 352.1 441 47.6
Ah.09g224810 Amaranthus hybridus HOM05D003622 ORTHO05D004453 8.1e-95 351.7 440 49.3
Lj7C432T7 Lonicera japonica HOM05D003622 ORTHO05D004453 1.5e-93 347.4 412 51.7
Aqoxy7G03634 Aquilegia oxysepala HOM05D003622 ORTHO05D004453 4.4e-93 345.9 439 47.8
Migut.K00423 Erythranthe guttata HOM05D003622 ORTHO05D004453 5.8e-93 345.5 442 50.2
Sed0008371 Sechium edule HOM05D003622 ORTHO05D004453 1.3e-92 344.4 430 47.9
SGA_v2.0_scaffold464G52002 Striga asiatica HOM05D003622 ORTHO05D004453 1.7e-92 344.0 440 48.9
Nn2g12120 Nelumbo nucifera HOM05D003622 ORTHO05D004453 8.3e-92 341.7 288 62.8
Hund26549 Selenicereus undatus HOM05D003622 ORTHO05D004453 1.6e-87 327.4 440 45.7
Thhalv10003437m.g Eutrema salsugineum HOM05D003622 ORTHO05D004453 4.4e-85 319.3 414 45.9
ATR0800G088 Amborella trichopoda HOM05D003622 ORTHO05D004453 5.8e-85 318.9 413 47.0
THA.LOC104808966 Tarenaya hassleriana HOM05D003622 ORTHO05D004453 5.4e-83 312.4 422 46.0
Migut.J01215 Erythranthe guttata HOM05D003622 ORTHO05D004453 3.5e-82 309.7 403 49.4
CARHR217470 Cardamine hirsuta HOM05D003622 ORTHO05D004453 5.1e-81 305.8 417 43.6
CDE03G0113 Ceratophyllum demersum HOM05D003622 ORTHO05D004453 8.7e-81 305.1 449 44.1
Aa31LG9G18070 Aethionema arabicum HOM05D003622 ORTHO05D004453 9.6e-80 301.6 418 45.5
BcaB02g08053 Brassica carinata HOM05D003622 ORTHO05D004453 3.6e-79 299.7 409 44.3
Duzib150G0473 Durio zibethinus HOM05D003622 ORTHO05D004453 1.8e-78 297.4 347 49.6
A04p09700 Brassica napus HOM05D003622 ORTHO05D004453 1.5e-77 294.3 418 44.5
C04p43220 Brassica napus HOM05D003622 ORTHO05D004453 2.0e-77 293.9 418 44.0
BcaB06g26937 Brassica carinata HOM05D003622 ORTHO05D004453 4.4e-77 292.7 417 44.4
Gohir.D13G206400 Gossypium hirsutum HOM05D003622 ORTHO05D004453 2.9e-76 290.0 358 48.0
Sp7g06890 Schrenkiella parvula HOM05D003622 ORTHO05D004453 3.8e-76 289.7 421 43.7
CDE06G0586 Ceratophyllum demersum HOM05D003622 ORTHO05D004453 4.2e-75 286.2 418 46.7
ECA234G4065 Erigeron canadensis HOM05D003622 ORTHO05D004453 7.1e-75 285.4 416 44.2
Carub.0007s3125 Capsella rubella HOM05D003622 ORTHO05D004453 9.3e-75 285.0 417 42.0
HanXRQChr12g0356631 Helianthus annuus HOM05D003622 ORTHO05D004453 1.7e-73 280.8 421 43.2
AT5G35430 Arabidopsis thaliana HOM05D003622 ORTHO05D004453 6.6e-73 278.9 417 42.2
HanXRQChr10g0315861 Helianthus annuus HOM05D003622 ORTHO05D004453 6.6e-73 278.9 413 45.0
AL7G44290 Arabidopsis lyrata HOM05D003622 ORTHO05D004453 1.5e-72 277.7 418 42.6
Carub.0001s0938 Capsella rubella HOM05D003622 ORTHO05D004453 4.8e-71 272.7 416 41.8
unitig_748.g7167 Utricularia gibba HOM05D003622 ORTHO05D004453 4.8e-71 272.7 415 42.4
Lsat_1_v5_gn_5_91841 Lactuca sativa HOM05D003622 ORTHO05D004453 8.1e-71 271.9 405 44.9
unitig_0.g2718 Utricularia gibba HOM05D003622 ORTHO05D004453 1.2e-69 268.1 428 43.0
Zm00001eb308130 Zea mays HOM05D003622 ORTHO05D004453 9.9e-69 265.0 425 41.9
BolC4t25899H Brassica oleracea HOM05D003622 ORTHO05D004453 3.8e-68 263.1 253 56.1
BraA04t16629Z Brassica rapa HOM05D003622 ORTHO05D004453 6.4e-68 262.3 252 56.0
BcaC02g09474 Brassica carinata HOM05D003622 ORTHO05D004453 1.1e-67 261.5 288 51.7
Zm00001eb095440 Zea mays HOM05D003622 ORTHO05D004453 1.6e-66 257.7 435 40.7
Os09g0123100 Oryza sativa ssp. japonica HOM05D003622 ORTHO05D004453 5.1e-65 252.7 430 40.7
HPP92_000465 Vanilla planifolia HOM05D003622 ORTHO05D004453 6.2e-63 245.7 232 53.4
SHI22466 Sapria himalayana HOM05D003622 ORTHO05D004453 5.8e-61 239.2 459 37.9
THA.LOC104826553 Tarenaya hassleriana HOM05D003622 ORTHO05D004453 1.0e-60 238.4 448 38.4
SEGI_29075 Sequoiadendron giganteum HOM05D003622 ORTHO05D004453 5.1e-57 226.1 467 34.0
Mapoly0024s0101 Marchantia polymorpha HOM05D003622 ORTHO05D004453 2.5e-51 207.2 471 33.3
MBI13_g36807_MAGBIO Magnolia biondii HOM05D003622 ORTHO05D004453 3.5e-50 203.4 124 77.4
SMO351G0297 Selaginella moellendorffii HOM05D003622 ORTHO05D004453 9.4e-43 178.7 346 39.0
Pp3c9_20660 Physcomitrium patens HOM05D003622 ORTHO05D004453 2.7e-42 177.2 334 35.9
Pp3c15_17690 Physcomitrium patens HOM05D003622 ORTHO05D004453 2.3e-41 174.1 336 37.5
Oeu055962.1 Olea europaea HOM05D003622 ORTHO05D004453 2.0e-40 171.0 422 34.4
BcaC02g09475 Brassica carinata HOM05D003622 ORTHO05D004453 7.2e-35 152.5 309 35.6
CBR_g27935 Chara braunii HOM05D000019 ORTHO05D000048 9.7e-32 142.1 203 38.4
HPP92_000473 Vanilla planifolia HOM05D003622 ORTHO05D004453 2.2e-31 141.0 176 46.0
SEGI_39442 Sequoiadendron giganteum HOM05D003622 ORTHO05D004453 3.7e-31 140.2 244 36.5
AagrBONN_evm.TU.Sc2ySwM_344.2256 Anthoceros agrestis HOM05D003622 ORTHO05D004453 1.1e-27 128.6 273 34.1
Actinidia38718 Actinidia chinensis HOM05D003622 ORTHO05D004453 1.6e-26 124.8 145 53.1
Oeu052177.3 Olea europaea HOM05D003622 ORTHO05D004453 2.8e-15 87.4 374 27.8
MBI13_g02370_MAGBIO Magnolia biondii HOM05D003622 ORTHO05D004453 2.1e-10 71.2 169 33.7
MBI13_g36809_MAGBIO Magnolia biondii HOM05D003622 ORTHO05D240810 2.0e-08 64.7 47 57.4


User provided reference genes

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