Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037657 Camellia sinensis var. sinensis HOM05D006420 ORTHO05D008009 1.2e-144 516.5 259 100.0
CSS0034260 Camellia sinensis var. sinensis HOM05D006420 ORTHO05D008009 7.5e-144 513.8 259 99.6
Actinidia05697 Actinidia chinensis HOM05D006420 ORTHO05D008009 8.9e-113 410.6 266 76.3
Dinv23938 Davidia involucrata HOM05D006420 ORTHO05D008009 1.2e-109 400.2 281 74.0
Lj9A85G78 Lonicera japonica HOM05D006420 ORTHO05D008009 1.2e-106 390.2 269 72.1
Lj9A86G16 Lonicera japonica HOM05D006420 ORTHO05D008009 1.6e-106 389.8 269 72.1
Hma1.2p1_0928F.1_g237740 Hydrangea macrophylla HOM05D006420 ORTHO05D008009 3.6e-106 388.7 265 72.8
RhsimUnG0226900 Rhododendron simsii HOM05D006420 ORTHO05D008009 8.3e-103 377.5 256 75.4
GSVIVG01000081001 Vitis vinifera HOM05D006420 ORTHO05D008009 3.5e-101 372.1 268 69.0
Hund21694 Selenicereus undatus HOM05D006420 ORTHO05D008009 3.0e-100 369.0 265 70.9
Solyc01g099130.3 Solanum lycopersicum HOM05D006420 ORTHO05D008009 3.3e-99 365.5 270 66.7
Sopen01g042690 Solanum pennellii HOM05D006420 ORTHO05D008009 3.3e-99 365.5 270 66.7
MSTRG.5100 Avicennia marina HOM05D006420 ORTHO05D008009 5.6e-99 364.8 270 65.9
PGSC0003DMG400024687 Solanum tuberosum HOM05D006420 ORTHO05D008009 7.3e-99 364.4 270 66.3
TAR636G1821 Trochodendron aralioides HOM05D006420 ORTHO05D008009 4.7e-98 361.7 284 65.5
TAR365G0270 Trochodendron aralioides HOM05D006420 ORTHO05D008009 8.1e-98 360.9 281 66.9
Aqoxy5G00493 Aquilegia oxysepala HOM05D006420 ORTHO05D008009 1.4e-97 360.1 271 64.9
Manes.08G120400 Manihot esculenta HOM05D006420 ORTHO05D008009 5.2e-97 358.2 263 65.4
Nitab4.5_0000137g0140 Nicotiana tabacum HOM05D006420 ORTHO05D008009 5.2e-97 358.2 270 65.2
Lsat_1_v5_gn_9_123421 Lactuca sativa HOM05D006420 ORTHO05D008009 8.9e-97 357.5 264 67.8
vmacro05011 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 1.5e-96 356.7 224 78.6
Gohir.A08G210900 Gossypium hirsutum HOM05D006420 ORTHO05D008009 2.6e-96 355.9 261 67.8
Gohir.D08G227700 Gossypium hirsutum HOM05D006420 ORTHO05D008009 2.6e-96 355.9 261 67.8
Gorai.004G241900 Gossypium raimondii HOM05D006420 ORTHO05D008009 2.6e-96 355.9 261 67.8
COL.COLO4_13456 Corchorus olitorius HOM05D006420 ORTHO05D008009 5.8e-96 354.8 261 68.2
Nn1g02269 Nelumbo nucifera HOM05D006420 ORTHO05D008009 1.1e-94 350.5 280 65.0
Oeu010909.1 Olea europaea HOM05D006420 ORTHO05D008009 1.1e-94 350.5 263 66.2
Nn4g26277 Nelumbo nucifera HOM05D006420 ORTHO05D008009 4.2e-94 348.6 231 74.9
Thecc.05G302400 Theobroma cacao HOM05D006420 ORTHO05D008009 4.2e-94 348.6 237 71.3
Sed0005627 Sechium edule HOM05D006420 ORTHO05D008009 2.7e-93 345.9 267 67.0
EL10Ac4g09358 Beta vulgaris HOM05D006420 ORTHO05D008009 3.5e-93 345.5 261 62.5
CAN.G1034.41 Capsicum annuum HOM05D006420 ORTHO05D008009 4.6e-93 345.1 242 68.2
AUR62000819 Chenopodium quinoa HOM05D006420 ORTHO05D008009 4.6e-93 345.1 261 64.0
Peaxi162Scf00037g00513 Petunia axillaris HOM05D006420 ORTHO05D008009 6.0e-93 344.7 228 71.1
PGR083G0891 Punica granatum HOM05D006420 ORTHO05D008009 6.0e-93 344.7 263 64.6
Duzib177G0348 Durio zibethinus HOM05D006420 ORTHO05D008009 1.0e-92 344.0 259 65.3
Cc02_g33350 Coffea canephora HOM05D006420 ORTHO05D008009 2.3e-92 342.8 227 71.4
PSO210G7816 Papaver somniferum HOM05D006420 ORTHO05D008009 3.0e-92 342.4 267 64.4
Cfa006594 Carpinus fangiana HOM05D006420 ORTHO05D008009 1.5e-91 340.1 224 73.2
AUR62005152 Chenopodium quinoa HOM05D006420 ORTHO05D008009 5.6e-91 338.2 272 62.1
CANSAT54G1557 Cannabis sativa HOM05D006420 ORTHO05D008009 1.2e-90 337.0 263 63.5
Ah.04g160290 Amaranthus hybridus HOM05D006420 ORTHO05D008009 1.6e-90 336.7 256 65.2
DCAR_029409 Daucus carota HOM05D006420 ORTHO05D008009 1.6e-90 336.7 224 72.8
Prupe.6G324800 Prunus persica HOM05D006420 ORTHO05D008009 8.1e-90 334.3 267 61.8
FAN14G2531 Fragaria x ananassa HOM05D006420 ORTHO05D008009 1.8e-89 333.2 269 62.1
Sc06g0003280 Simmondsia chinensis HOM05D006420 ORTHO05D008009 1.8e-89 333.2 224 73.2
CiPaw.07G020700 Carya illinoinensis HOM05D006420 ORTHO05D008009 6.9e-89 331.3 224 71.4
Glyma.20G234300 Glycine max HOM05D006420 ORTHO05D008009 6.9e-89 331.3 258 63.2
Psat6g150480 Pisum sativum HOM05D006420 ORTHO05D008009 2.0e-88 329.7 261 64.0
Cfa006595 Carpinus fangiana HOM05D006420 ORTHO05D008009 2.6e-88 329.3 224 71.0
Migut.N01987 Erythranthe guttata HOM05D006420 ORTHO05D008009 2.6e-88 329.3 275 61.1
Migut.N02012 Erythranthe guttata HOM05D006420 ORTHO05D008009 2.6e-88 329.3 275 61.1
MD04G1204800 Malus domestica HOM05D006420 ORTHO05D008009 5.8e-88 328.2 264 62.5
HPP92_020377 Vanilla planifolia HOM05D006420 ORTHO05D008009 5.8e-88 328.2 260 63.5
Lalb_Chr21g0310681 Lupinus albus HOM05D006420 ORTHO05D008009 7.6e-88 327.8 262 63.4
Phvul.007G179700 Phaseolus vulgaris HOM05D006420 ORTHO05D008009 7.6e-88 327.8 257 62.6
CsaV3_2G005340 Cucumis sativus L. HOM05D006420 ORTHO05D008009 9.9e-88 327.4 272 62.9
Cpa.g.sc48.61 Carica papaya HOM05D006420 ORTHO05D008009 1.3e-87 327.0 261 62.8
Ciclev10002177m.g Citrus clementina HOM05D006420 ORTHO05D008009 1.3e-87 327.0 267 64.4
MD12G1218500 Malus domestica HOM05D006420 ORTHO05D008009 4.9e-87 325.1 263 61.2
Duzib106G1877 Durio zibethinus HOM05D006420 ORTHO05D008009 8.4e-87 324.3 224 70.1
Ca_10114_v3 Cicer arietinum L. HOM05D006420 ORTHO05D008009 5.4e-86 321.6 227 68.7
Glyma.10G154000 Glycine max HOM05D006420 ORTHO05D008009 7.1e-86 321.2 261 60.5
RcHm_v2.0_Chr3g0454981 Rosa chinensis HOM05D006420 ORTHO05D008009 7.1e-86 321.2 281 59.1
arahy.Tifrunner.gnm1.ann1.GHU2GX Arachis hypogaea HOM05D006420 ORTHO05D008009 9.3e-86 320.9 227 70.0
ClCG02G015760 Citrullus lanatus HOM05D006420 ORTHO05D008009 9.3e-86 320.9 272 61.4
FAN09G3808 Fragaria x ananassa HOM05D006420 ORTHO05D008009 4.6e-85 318.5 271 58.7
FvH4_6g06020 Fragaria vesca HOM05D006420 ORTHO05D008009 7.8e-85 317.8 269 59.9
THA.LOC104820863 Tarenaya hassleriana HOM05D006420 ORTHO05D008009 7.8e-85 317.8 262 59.5
QL03p007116 Quercus lobata HOM05D006420 ORTHO05D008009 1.0e-84 317.4 267 60.3
arahy.Tifrunner.gnm1.ann1.7ESY4D Arachis hypogaea HOM05D006420 ORTHO05D008009 1.3e-84 317.0 227 69.2
TWI56G0424 Tripterygium wilfordii HOM05D006420 ORTHO05D008009 1.7e-84 316.6 270 60.4
ATR0332G062 Amborella trichopoda HOM05D006420 ORTHO05D008009 3.9e-84 315.5 269 58.4
TPR.G6113 Trifolium pratense HOM05D006420 ORTHO05D008009 5.1e-84 315.1 228 66.2
Atru.chr2.393 Acer truncatum HOM05D006420 ORTHO05D008009 1.5e-83 313.5 266 60.2
VMungo0720G1765 Vigna mungo HOM05D006420 ORTHO05D008009 4.3e-83 312.0 260 59.6
FAN05G3282 Fragaria x ananassa HOM05D006420 ORTHO05D008009 2.1e-82 309.7 270 58.1
ECA232G4325 Erigeron canadensis HOM05D006420 ORTHO05D008009 3.6e-82 308.9 222 69.8
Nitab4.5_0005541g0070 Nicotiana tabacum HOM05D006420 ORTHO05D008009 5.3e-81 305.1 270 57.4
FAN02G2504 Fragaria x ananassa HOM05D006420 ORTHO05D008009 9.0e-81 304.3 233 63.9
Lj5g0015213 Lotus japonicus HOM05D006420 ORTHO05D008009 9.0e-81 304.3 228 64.9
MBI04_g29616_MAGBIO Magnolia biondii HOM05D006420 ORTHO05D008009 1.2e-80 303.9 186 76.9
Medtr1g082950 Medicago truncatula HOM05D006420 ORTHO05D008009 1.2e-80 303.9 227 64.8
FAN05G1000 Fragaria x ananassa HOM05D006420 ORTHO05D008009 3.4e-80 302.4 288 54.9
A03p68650 Brassica napus HOM05D006420 ORTHO05D008009 9.9e-80 300.8 236 60.6
BraSC39t46193Z Brassica rapa HOM05D006420 ORTHO05D008009 9.9e-80 300.8 236 60.6
Thhalv10023646m.g Eutrema salsugineum HOM05D006420 ORTHO05D008009 1.1e-78 297.4 257 56.8
Aa31LG2G11700 Aethionema arabicum HOM05D006774 ORTHO05D008411 2.4e-78 296.2 260 56.5
BcaC06g31763 Brassica carinata HOM05D006420 ORTHO05D008009 4.2e-78 295.4 262 55.7
HanXRQChr16g0524621 Helianthus annuus HOM05D006420 ORTHO05D008009 9.3e-78 294.3 218 66.5
Haze_04190 Corylus avellana HOM05D006420 ORTHO05D008009 7.9e-77 291.2 323 49.8
Potri.013G021600 Populus trichocarpa HOM05D006420 ORTHO05D008009 2.3e-76 289.7 219 66.2
BcaC02g10755 Brassica carinata HOM05D006420 ORTHO05D008009 5.1e-76 288.5 260 54.6
C04p25420 Brassica napus HOM05D006420 ORTHO05D008009 5.1e-76 288.5 260 54.6
BolC4t24060H Brassica oleracea HOM05D006420 ORTHO05D008009 5.1e-76 288.5 260 54.6
CARHR287540 Cardamine hirsuta HOM05D006420 ORTHO05D008009 2.8e-74 282.7 221 62.9
SpUn0004_0090 Schrenkiella parvula HOM05D006420 ORTHO05D008009 8.1e-74 281.2 221 62.0
Zm00001eb054020 Zea mays HOM05D006420 ORTHO05D008009 2.4e-73 279.6 228 57.9
Carub.0002s0818 Capsella rubella HOM05D006420 ORTHO05D008009 2.0e-72 276.6 220 61.4
AL1G65580 Arabidopsis lyrata HOM05D006420 ORTHO05D008009 5.8e-72 275.0 221 61.1
SGA_v2.0_scaffold81G26063 Striga asiatica HOM05D006420 ORTHO05D000105 7.6e-72 274.6 470 38.7
Sabra13G0024000 Salix brachista HOM05D006420 ORTHO05D008009 2.9e-71 272.7 219 62.1
AT1G55000 Arabidopsis thaliana HOM05D006420 ORTHO05D008009 6.4e-71 271.6 220 59.5
MELO3C004253.2 Cucumis melo HOM05D000208 ORTHO05D000130 1.8e-68 263.5 219 62.6
Os03g0699600 Oryza sativa ssp. japonica HOM05D006420 ORTHO05D008009 1.5e-67 260.4 208 57.7
Pp3c16_5370 Physcomitrium patens HOM05D006420 ORTHO05D008009 1.5e-59 233.8 210 56.7
AagrBONN_evm.TU.Sc2ySwM_368.542 Anthoceros agrestis HOM05D006420 ORTHO05D008009 2.3e-52 209.9 214 48.1
Rhsim07G0185100 Rhododendron simsii HOM05D006420 ORTHO05D008009 1.3e-50 204.1 125 82.4
CDE02G2742 Ceratophyllum demersum HOM05D006420 ORTHO05D008009 8.2e-50 201.4 164 61.0
SMO356G0643 Selaginella moellendorffii HOM05D006420 ORTHO05D008009 1.3e-47 194.1 208 46.2
Potri.005G032100 Populus trichocarpa HOM05D006420 ORTHO05D008009 5.1e-44 182.2 155 58.7
MD10G1167700 Malus domestica HOM05D006420 ORTHO05D008009 7.7e-40 168.3 117 67.5
QL03p007970 Quercus lobata HOM05D006420 ORTHO05D008009 2.5e-38 163.3 115 69.6
QL03p007144 Quercus lobata HOM05D006420 ORTHO05D008009 2.7e-37 159.8 116 69.0
vmacro23281 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 2.3e-36 156.8 99 74.7
Eucgr.B01949 Eucalyptus grandis HOM05D006420 ORTHO05D008009 1.1e-35 154.5 111 64.9
Eucgr.B01859 Eucalyptus grandis HOM05D006420 ORTHO05D008009 2.8e-34 149.8 107 64.5
Eucgr.B01946 Eucalyptus grandis HOM05D006420 ORTHO05D008009 4.8e-34 149.1 104 66.3
Sabra05G0034600 Salix brachista HOM05D006420 ORTHO05D008009 1.5e-27 127.5 134 50.0
SEGI_28170 Sequoiadendron giganteum HOM05D006420 ORTHO05D008009 5.9e-24 115.5 83 62.7
Cre16.g667100 Chlamydomonas reinhardtii HOM05D006420 ORTHO05D008009 4.2e-22 109.4 231 29.4
vmacro23282 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 2.4e-17 93.6 104 54.8
QL03p007977 Quercus lobata HOM05D006420 ORTHO05D008009 2.2e-10 70.5 76 44.7
QL03p007137 Quercus lobata HOM05D006420 ORTHO05D008009 8.3e-10 68.6 67 49.3
GSVIVG01012047001 Vitis vinifera HOM05D002624 ORTHO05D002796 1.6e-08 64.3 87 40.2
Thhalv10024156m.g Eutrema salsugineum HOM05D006420 ORTHO05D008009 1.3e-07 61.2 84 39.3


User provided reference genes

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