Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037652 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 1.8e-78 295.8 144 100.0
CSS0003948 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 3.6e-63 245.0 152 84.2
Rhsim11G0157800 Rhododendron simsii HOM05D004481 ORTHO05D005350 7.5e-53 210.7 138 74.6
TAR628G0287 Trochodendron aralioides HOM05D004481 ORTHO05D005350 6.0e-50 201.1 152 68.4
Dinv42206 Davidia involucrata HOM05D002228 ORTHO05D005350 1.0e-49 200.3 152 68.4
Rhsim11G0156300 Rhododendron simsii HOM05D004481 ORTHO05D005350 1.7e-49 199.5 152 67.8
Actinidia27975 Actinidia chinensis HOM05D004481 ORTHO05D005350 1.2e-47 193.4 152 66.4
CSS0002878 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 1.8e-46 189.5 153 63.4
CSS0015264 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 1.8e-46 189.5 153 63.4
TAR376G0836 Trochodendron aralioides HOM05D004481 ORTHO05D005350 3.1e-46 188.7 151 66.2
Cfa004607 Carpinus fangiana HOM05D004481 ORTHO05D005350 2.0e-45 186.0 153 63.4
DCAR_021976 Daucus carota HOM05D004481 ORTHO05D005350 4.4e-45 184.9 153 61.4
CiPaw.05G013400 Carya illinoinensis HOM05D004481 ORTHO05D005350 7.5e-45 184.1 152 63.8
Lj5A215G63 Lonicera japonica HOM05D004481 ORTHO05D005350 9.8e-45 183.7 159 62.3
Gohir.A12G021100 Gossypium hirsutum HOM05D004481 ORTHO05D005350 1.7e-44 183.0 152 63.2
Hma1.2p1_1023F.1_g249000 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 2.9e-44 182.2 153 61.4
Thecc.02G111500 Theobroma cacao HOM05D004481 ORTHO05D005350 3.7e-44 181.8 153 64.1
CiPaw.06G168400 Carya illinoinensis HOM05D004481 ORTHO05D005350 4.9e-44 181.4 153 61.4
Nn1g04655 Nelumbo nucifera HOM05D004481 ORTHO05D005350 4.9e-44 181.4 152 61.8
Medtr1g107045 Medicago truncatula HOM05D004481 ORTHO05D005350 8.3e-44 180.6 152 63.2
Ciclev10028970m.g Citrus clementina HOM05D004481 ORTHO05D005350 1.9e-43 179.5 152 61.2
GSVIVG01037896001 Vitis vinifera HOM05D004481 ORTHO05D005350 1.9e-43 179.5 152 63.8
CSS0013759 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 2.4e-43 179.1 153 60.8
Gohir.D12G021400 Gossypium hirsutum HOM05D004481 ORTHO05D005350 2.4e-43 179.1 152 61.8
Gorai.008G021700 Gossypium raimondii HOM05D004481 ORTHO05D005350 2.4e-43 179.1 152 61.8
QL11p032653 Quercus lobata HOM05D004481 ORTHO05D005350 2.4e-43 179.1 152 61.8
TWI79G1728 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 2.4e-43 179.1 152 61.2
TPR.G27083 Trifolium pratense HOM05D004481 ORTHO05D005350 3.2e-43 178.7 152 61.2
Psat6g216600 Pisum sativum HOM05D004481 ORTHO05D005350 4.1e-43 178.3 152 61.2
CANSAT25G3441 Cannabis sativa HOM05D004481 ORTHO05D005350 1.2e-42 176.8 152 63.8
Glyma.10G260500 Glycine max HOM05D004481 ORTHO05D005350 1.6e-42 176.4 152 61.2
Lj5g0012751 Lotus japonicus HOM05D004481 ORTHO05D005350 1.6e-42 176.4 152 61.8
TWI75G0922 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 1.6e-42 176.4 152 63.2
MELO3C018500.2 Cucumis melo HOM05D004481 ORTHO05D005350 2.1e-42 176.0 151 61.6
Glyma.20G130700 Glycine max HOM05D004481 ORTHO05D005350 2.1e-42 176.0 152 61.2
Sabra09G0071800 Salix brachista HOM05D004481 ORTHO05D005350 2.1e-42 176.0 152 60.5
Hund06305 Selenicereus undatus HOM05D004481 ORTHO05D005350 2.1e-42 176.0 138 65.2
RcHm_v2.0_Chr6g0254491 Rosa chinensis HOM05D004481 ORTHO05D005350 3.5e-42 175.3 152 61.2
EL10Ac9g22252 Beta vulgaris HOM05D004481 ORTHO05D005350 4.6e-42 174.9 136 64.0
CsaV3_7G008050 Cucumis sativus L. HOM05D004481 ORTHO05D005350 4.6e-42 174.9 151 60.9
Potri.001G298500 Populus trichocarpa HOM05D004481 ORTHO05D005350 4.6e-42 174.9 152 61.2
PSO170G4403 Papaver somniferum HOM05D004481 ORTHO05D005350 7.8e-42 174.1 152 61.2
Solyc10g049850.3 Solanum lycopersicum HOM05D004481 ORTHO05D005350 1.0e-41 173.7 152 58.6
Sopen10g019880 Solanum pennellii HOM05D004481 ORTHO05D005350 1.0e-41 173.7 152 58.6
PGSC0003DMG400023263 Solanum tuberosum HOM05D004481 ORTHO05D005350 1.0e-41 173.7 153 58.2
Potri.009G093200 Populus trichocarpa HOM05D004481 ORTHO05D005350 1.3e-41 173.3 152 59.9
Prupe.8G137600 Prunus persica HOM05D004481 ORTHO05D005350 1.3e-41 173.3 152 61.2
CANSAT25G2190 Cannabis sativa HOM05D004481 ORTHO05D005350 1.7e-41 172.9 152 62.5
Ca_11058_v3 Cicer arietinum L. HOM05D004481 ORTHO05D005350 1.7e-41 172.9 152 59.9
Cc02_g19430 Coffea canephora HOM05D004481 ORTHO05D005350 2.3e-41 172.6 152 59.2
Duzib052G1089 Durio zibethinus HOM05D004481 ORTHO05D005350 2.3e-41 172.6 155 60.0
Nitab4.5_0002647g0020 Nicotiana tabacum HOM05D004481 ORTHO05D005350 2.3e-41 172.6 152 57.9
MD10G1100100 Malus domestica HOM05D004481 ORTHO05D005350 3.0e-41 172.2 152 61.8
Aqoxy5G01130 Aquilegia oxysepala HOM05D004481 ORTHO05D005350 5.0e-41 171.4 152 59.9
ClCG02G006560 Citrullus lanatus HOM05D004481 ORTHO05D005350 5.0e-41 171.4 151 60.9
PGR142G4205 Punica granatum HOM05D004481 ORTHO05D005350 6.6e-41 171.0 152 59.9
Manes.07G066500 Manihot esculenta HOM05D004481 ORTHO05D005350 8.6e-41 170.6 152 59.9
Sc18g0005550 Simmondsia chinensis HOM05D004481 ORTHO05D005350 1.5e-40 169.9 151 57.0
Lalb_Chr02g0145211 Lupinus albus HOM05D004481 ORTHO05D005350 1.9e-40 169.5 152 59.2
Cpa.g.sc106.118 Carica papaya HOM05D004481 ORTHO05D005350 2.5e-40 169.1 154 59.1
FAN27G3202 Fragaria x ananassa HOM05D004481 ORTHO05D005350 2.5e-40 169.1 152 61.2
PSO210G1902 Papaver somniferum HOM05D004481 ORTHO05D005350 3.3e-40 168.7 152 59.9
arahy.Tifrunner.gnm1.ann1.PGW4NS Arachis hypogaea HOM05D004481 ORTHO05D005350 4.3e-40 168.3 153 60.1
FvH4_2g04780 Fragaria vesca HOM05D004481 ORTHO05D005350 4.3e-40 168.3 152 59.2
FAN24G0473 Fragaria x ananassa HOM05D004481 ORTHO05D005350 4.3e-40 168.3 152 59.2
PGSC0003DMG400025761 Solanum tuberosum HOM05D004481 ORTHO05D005350 4.3e-40 168.3 152 58.6
arahy.Tifrunner.gnm1.ann1.5RC8JY Arachis hypogaea HOM05D004481 ORTHO05D005350 5.6e-40 167.9 152 59.9
CAN.G606.21 Capsicum annuum HOM05D004481 ORTHO05D005350 5.6e-40 167.9 152 58.6
Lalb_Chr21g0308241 Lupinus albus HOM05D004481 ORTHO05D005350 7.3e-40 167.5 152 60.5
Phvul.007G041700 Phaseolus vulgaris HOM05D004481 ORTHO05D005350 7.3e-40 167.5 153 57.5
Sed0018810 Sechium edule HOM05D004481 ORTHO05D005350 7.3e-40 167.5 151 59.6
Hma1.2p1_1023F.1_g248990 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 9.5e-40 167.2 152 57.9
Nn5g30459 Nelumbo nucifera HOM05D004481 ORTHO05D005350 1.2e-39 166.8 152 60.5
Oeu037260.1 Olea europaea HOM05D004481 ORTHO05D005350 1.6e-39 166.4 146 61.6
Sp7g32060 Schrenkiella parvula HOM05D004481 ORTHO05D005350 1.6e-39 166.4 152 58.6
AUR62010332 Chenopodium quinoa HOM05D004481 ORTHO05D005350 2.1e-39 166.0 150 57.3
Atru.chr5.2445 Acer truncatum HOM05D004481 ORTHO05D005350 2.8e-39 165.6 154 57.1
SalBow6G4388 Salvia bowleyana HOM05D004481 ORTHO05D005350 2.8e-39 165.6 147 60.5
SalBow6G4779 Salvia bowleyana HOM05D004481 ORTHO05D005350 2.8e-39 165.6 147 60.5
Sed0023236 Sechium edule HOM05D004481 ORTHO05D005350 3.6e-39 165.2 152 57.9
Nitab4.5_0001480g0100 Nicotiana tabacum HOM05D004481 ORTHO05D005350 4.7e-39 164.9 152 57.2
Thhalv10025895m.g Eutrema salsugineum HOM05D004481 ORTHO05D005350 6.2e-39 164.5 152 57.9
Carub.0007s0609 Capsella rubella HOM05D004481 ORTHO05D005350 8.1e-39 164.1 152 55.9
Migut.B00402 Erythranthe guttata HOM05D004481 ORTHO05D005350 8.1e-39 164.1 147 57.8
VMungo0720G1503 Vigna mungo HOM05D004481 ORTHO05D005350 1.1e-38 163.7 152 55.9
Eucgr.I01088 Eucalyptus grandis HOM05D004481 ORTHO05D005350 1.8e-38 162.9 152 60.5
A01p04140 Brassica napus HOM05D004481 ORTHO05D005350 5.2e-38 161.4 153 58.2
vmacro01990 Vaccinium macrocarpon HOM05D004481 ORTHO05D005350 5.2e-38 161.4 139 61.2
BcaNung04989 Brassica carinata HOM05D004481 ORTHO05D005350 8.9e-38 160.6 152 56.6
BraA01t00403Z Brassica rapa HOM05D004481 ORTHO05D005350 8.9e-38 160.6 153 57.5
AL7G17000 Arabidopsis lyrata HOM05D004481 ORTHO05D005350 1.2e-37 160.2 152 57.2
Nitab4.5_0003699g0050 Nicotiana tabacum HOM05D004481 ORTHO05D005350 1.2e-37 160.2 163 54.0
THA.LOC104807234 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 1.5e-37 159.8 152 56.6
MSTRG.20195 Avicennia marina HOM05D004481 ORTHO05D005350 2.6e-37 159.1 147 58.5
CARHR242510 Cardamine hirsuta HOM05D004481 ORTHO05D005350 2.6e-37 159.1 152 54.6
Peaxi162Scf00016g02527 Petunia axillaris HOM05D004481 ORTHO05D005350 4.4e-37 158.3 190 48.4
SGA_v2.0_scaffold225G42995 Striga asiatica HOM05D004481 ORTHO05D005350 4.4e-37 158.3 147 57.1
AT4G34270 Arabidopsis thaliana HOM05D004481 ORTHO05D005350 9.9e-37 157.1 152 55.3
THA.LOC104819549 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 1.3e-36 156.8 152 55.3
BolC1t00437H Brassica oleracea HOM05D004481 ORTHO05D005350 1.7e-36 156.4 152 55.3
C01p04510 Brassica napus HOM05D004481 ORTHO05D005350 4.9e-36 154.8 152 55.3
CDE02G3699 Ceratophyllum demersum HOM05D004481 ORTHO05D005350 4.9e-36 154.8 154 53.2
SHI05271 Sapria himalayana HOM05D004481 ORTHO05D005350 4.9e-36 154.8 152 53.9
HanXRQChr04g0105981 Helianthus annuus HOM05D004481 ORTHO05D005350 1.9e-35 152.9 152 52.6
Aa31LG2G16850 Aethionema arabicum HOM05D004481 ORTHO05D005350 2.4e-35 152.5 152 55.9
Zm00001eb214380 Zea mays HOM05D004481 ORTHO05D005350 3.2e-35 152.1 149 54.4
ECA234G2632 Erigeron canadensis HOM05D004481 ORTHO05D005350 5.4e-35 151.4 152 55.3
Lsat_1_v5_gn_5_116421 Lactuca sativa HOM05D004481 ORTHO05D005350 7.1e-35 151.0 155 54.2
unitig_0.g879 Utricularia gibba HOM05D004481 ORTHO05D005350 1.6e-34 149.8 147 57.1
Haze_10202 Corylus avellana HOM05D004481 ORTHO05D005350 4.6e-34 148.3 138 57.2
ATR0661G316 Amborella trichopoda HOM05D004481 ORTHO05D005350 5.1e-33 144.8 155 51.6
Os03g0760600 Oryza sativa ssp. japonica HOM05D004481 ORTHO05D005350 1.8e-30 136.3 148 52.0
SEGI_10030 Sequoiadendron giganteum HOM05D004481 ORTHO05D005350 2.4e-30 136.0 154 50.6
Mapoly0064s0080 Marchantia polymorpha HOM05D004481 ORTHO05D005350 5.2e-30 134.8 157 47.8
AUR62039053 Chenopodium quinoa HOM05D004481 ORTHO05D005350 9.9e-29 130.6 136 50.0
AagrBONN_evm.TU.Sc2ySwM_228.2403 Anthoceros agrestis HOM05D004481 ORTHO05D005350 1.2e-26 123.6 153 46.4
FAN20G2321 Fragaria x ananassa HOM05D004481 ORTHO05D005350 5.6e-24 114.8 138 47.1
Ah.01g010900 Amaranthus hybridus HOM05D004481 ORTHO05D005350 7.3e-24 114.4 93 63.4
FAN15G0583 Fragaria x ananassa HOM05D004481 ORTHO05D005350 7.3e-24 114.4 152 46.1
SMO361G0327 Selaginella moellendorffii HOM05D004481 ORTHO05D005350 7.3e-24 114.4 149 45.6
Sopen01g049670 Solanum pennellii HOM05D004481 ORTHO05D005350 1.4e-22 110.2 72 73.6
Actinidia00401 Actinidia chinensis HOM05D004481 ORTHO05D005350 4.0e-22 108.6 76 75.0
Pp3c10_18670 Physcomitrium patens HOM05D004481 ORTHO05D005350 5.8e-21 104.8 154 40.3
HPP92_010143 Vanilla planifolia HOM05D004481 ORTHO05D005350 4.6e-18 95.1 89 53.9
Peaxi162Scf00003g02548 Petunia axillaris HOM05D004481 ORTHO05D005350 6.9e-14 81.3 138 35.5
CBR_g36716 Chara braunii HOM05D004481 ORTHO05D005350 9.0e-14 80.9 77 54.5
PRCOL_00000955 Prasinoderma coloniale HOM05D004481 ORTHO05D005350 3.8e-12 75.5 149 35.6
MD00G1108800 Malus domestica HOM05D004481 ORTHO05D005350 1.4e-11 73.6 62 59.7
MCO13G563 Micromonas commoda HOM05D004481 ORTHO05D005350 3.2e-11 72.4 146 34.2
Cre17.g734150 Chlamydomonas reinhardtii HOM05D004481 ORTHO05D005350 1.9e-08 63.2 100 38.0
BcaC08g44162 Brassica carinata HOM05D004481 ORTHO05D005350 6.2e-07 58.2 98 40.8
BcaC01g03137 Brassica carinata HOM05D004481 ORTHO05D005350 5.3e-06 55.1 98 39.8
C03p55700 Brassica napus HOM05D004481 ORTHO05D005350 5.3e-06 55.1 98 39.8
BolC3t17849H Brassica oleracea HOM05D004481 ORTHO05D005350 5.3e-06 55.1 98 39.8
BcaNung04988 Brassica carinata HOM05D004481 ORTHO05D005350 9.0e-06 54.3 34 67.6
Cfa024874 Carpinus fangiana HOM05D004481 ORTHO05D005350 9.0e-06 54.3 83 37.3


User provided reference genes

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