Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037650 Camellia sinensis var. sinensis HOM05D005223 ORTHO05D006449 0.0e+00 1988.0 1035 100.0
Rhsim08G0185000 Rhododendron simsii HOM05D005223 ORTHO05D006449 0.0e+00 1511.5 1032 77.9
Dinv38469 Davidia involucrata HOM05D005223 ORTHO05D006449 0.0e+00 1487.6 998 77.0
vmacro19239 Vaccinium macrocarpon HOM05D005223 ORTHO05D006449 0.0e+00 1454.1 1082 73.4
Hma1.2p1_0123F.1_g058130 Hydrangea macrophylla HOM05D005223 ORTHO05D006449 0.0e+00 1423.7 1015 73.0
Cfa018892 Carpinus fangiana HOM05D005223 ORTHO05D006449 0.0e+00 1404.0 1019 70.6
GSVIVG01007540001 Vitis vinifera HOM05D005223 ORTHO05D006449 0.0e+00 1389.4 1053 67.9
Haze_07276 Corylus avellana HOM05D005223 ORTHO05D006449 0.0e+00 1387.5 1018 70.2
QL10p005060 Quercus lobata HOM05D005223 ORTHO05D006449 0.0e+00 1364.0 1018 68.8
Lj9C475T6 Lonicera japonica HOM05D005223 ORTHO05D006449 0.0e+00 1357.4 1040 69.2
Atru.chr9.1012 Acer truncatum HOM05D005223 ORTHO05D006449 0.0e+00 1346.6 1006 67.6
Thecc.03G122800 Theobroma cacao HOM05D005223 ORTHO05D006449 0.0e+00 1342.8 1018 68.0
MD14G1163600 Malus domestica HOM05D005223 ORTHO05D006449 0.0e+00 1332.4 1016 67.3
RcHm_v2.0_Chr7g0191161 Rosa chinensis HOM05D005223 ORTHO05D006449 0.0e+00 1332.4 1019 67.5
CANSAT80G2773 Cannabis sativa HOM05D005223 ORTHO05D006449 0.0e+00 1319.7 1036 65.5
Gorai.001G061400 Gossypium raimondii HOM05D005223 ORTHO05D006449 0.0e+00 1318.9 1021 66.9
Prupe.5G157000 Prunus persica HOM05D005223 ORTHO05D006449 0.0e+00 1315.4 1017 67.1
TAR629G2346 Trochodendron aralioides HOM05D005223 ORTHO05D006449 0.0e+00 1315.1 1005 67.7
Ciclev10018616m.g Citrus clementina HOM05D005223 ORTHO05D006449 0.0e+00 1313.9 1035 66.0
Gohir.D07G057900 Gossypium hirsutum HOM05D005223 ORTHO05D006449 0.0e+00 1312.7 1021 66.6
Gohir.A07G053500 Gossypium hirsutum HOM05D005223 ORTHO05D006449 0.0e+00 1307.4 1018 66.8
Nn4g22461 Nelumbo nucifera HOM05D005223 ORTHO05D006449 0.0e+00 1278.1 1025 65.3
TWI14G1297 Tripterygium wilfordii HOM05D005223 ORTHO05D006449 0.0e+00 1278.1 1019 65.3
FAN18G3380 Fragaria x ananassa HOM05D005223 ORTHO05D006449 0.0e+00 1277.3 1020 66.0
FvH4_5g07490 Fragaria vesca HOM05D005223 ORTHO05D006449 0.0e+00 1275.4 1022 65.9
FAN04G2946 Fragaria x ananassa HOM05D005223 ORTHO05D006449 0.0e+00 1271.9 1020 65.6
Potri.015G090700 Populus trichocarpa HOM05D005223 ORTHO05D006449 0.0e+00 1270.8 1022 65.0
FAN13G2650 Fragaria x ananassa HOM05D005223 ORTHO05D006449 0.0e+00 1269.2 1025 65.4
ClCG03G003490 Citrullus lanatus HOM05D005223 ORTHO05D006449 0.0e+00 1259.2 1019 62.4
Cc04_g10370 Coffea canephora HOM05D005223 ORTHO05D006449 0.0e+00 1256.5 1011 64.7
Manes.06G115300 Manihot esculenta HOM05D005223 ORTHO05D006449 0.0e+00 1254.2 1035 62.8
Sed0011232 Sechium edule HOM05D005223 ORTHO05D006449 0.0e+00 1243.8 1029 62.3
MELO3C002332.2 Cucumis melo HOM05D005223 ORTHO05D006449 0.0e+00 1243.4 1019 61.6
HanXRQChr05g0154741 Helianthus annuus HOM05D005223 ORTHO05D006449 0.0e+00 1242.6 1006 64.0
DCAR_021603 Daucus carota HOM05D005223 ORTHO05D006449 0.0e+00 1240.7 1017 64.3
CsaV3_1G009290 Cucumis sativus L. HOM05D005223 ORTHO05D006449 0.0e+00 1238.4 1019 61.6
Migut.I00475 Erythranthe guttata HOM05D005223 ORTHO05D006449 0.0e+00 1234.2 1017 63.5
Nitab4.5_0000955g0070 Nicotiana tabacum HOM05D005223 ORTHO05D006449 0.0e+00 1228.8 1017 63.8
MSTRG.11293 Avicennia marina HOM05D005223 ORTHO05D006449 0.0e+00 1225.7 1016 63.4
PGSC0003DMG400025026 Solanum tuberosum HOM05D005223 ORTHO05D006449 0.0e+00 1223.0 1010 62.9
Sopen10g002700 Solanum pennellii HOM05D005223 ORTHO05D006449 0.0e+00 1221.1 1009 63.3
Duzib084G0239 Durio zibethinus HOM05D005223 ORTHO05D006449 0.0e+00 1220.7 1020 63.7
Nitab4.5_0002775g0020 Nicotiana tabacum HOM05D005223 ORTHO05D006449 0.0e+00 1219.9 1016 63.6
ECA246G2102 Erigeron canadensis HOM05D005223 ORTHO05D006449 0.0e+00 1216.4 1006 64.1
SGA_v2.0_scaffold457G51932 Striga asiatica HOM05D005223 ORTHO05D006449 0.0e+00 1216.4 1019 61.4
PGR083G1937 Punica granatum HOM05D005223 ORTHO05D006449 0.0e+00 1215.7 1041 62.4
CiPaw.12G035700 Carya illinoinensis HOM05D005223 ORTHO05D006449 0.0e+00 1213.0 900 69.3
Glyma.04G193000 Glycine max HOM05D005223 ORTHO05D006449 0.0e+00 1209.5 1015 61.7
Solyc10g006780.4 Solanum lycopersicum HOM05D005223 ORTHO05D006449 0.0e+00 1204.9 1011 62.1
Sabra15G0112800 Salix brachista HOM05D005223 ORTHO05D000001 0.0e+00 1202.2 994 63.6
Eucgr.L01337 Eucalyptus grandis HOM05D005223 ORTHO05D006449 0.0e+00 1196.8 1023 60.7
Aqoxy5G03583 Aquilegia oxysepala HOM05D005223 ORTHO05D006449 0.0e+00 1195.3 1021 61.0
Medtr3g075100 Medicago truncatula HOM05D005223 ORTHO05D006449 0.0e+00 1193.7 1015 60.2
Lsat_1_v5_gn_5_13240 Lactuca sativa HOM05D005223 ORTHO05D006449 0.0e+00 1192.6 1007 61.7
Phvul.009G168800 Phaseolus vulgaris HOM05D005223 ORTHO05D006449 0.0e+00 1191.8 1016 61.1
Lj1g0000662 Lotus japonicus HOM05D005223 ORTHO05D006449 0.0e+00 1186.8 1015 61.0
PSO063G1058 Papaver somniferum HOM05D005223 ORTHO05D006449 0.0e+00 1181.0 1019 60.5
Lalb_Chr08g0236961 Lupinus albus HOM05D005223 ORTHO05D006449 0.0e+00 1179.9 1015 60.5
CAN.G1110.40 Capsicum annuum HOM05D005223 ORTHO05D006449 0.0e+00 1179.1 1011 61.4
Ca_16089_v3 Cicer arietinum L. HOM05D005223 ORTHO05D006449 0.0e+00 1178.3 1016 60.5
VMungo1309G0017 Vigna mungo HOM05D005223 ORTHO05D006449 0.0e+00 1167.1 1017 59.9
SalBow5G2547 Salvia bowleyana HOM05D005223 ORTHO05D006449 0.0e+00 1166.4 1024 59.3
Peaxi162Scf00536g00422 Petunia axillaris HOM05D005223 ORTHO05D006449 0.0e+00 1162.9 1025 61.2
CSS0005553 Camellia sinensis var. sinensis HOM05D005223 ORTHO05D006449 0.0e+00 1159.8 702 89.6
TPR.G13978 Trifolium pratense HOM05D005223 ORTHO05D006449 0.0e+00 1157.1 1017 59.2
arahy.Tifrunner.gnm1.ann1.D4E4RT Arachis hypogaea HOM05D005223 ORTHO05D006449 0.0e+00 1151.0 1050 58.6
Sc10g0010350 Simmondsia chinensis HOM05D005223 ORTHO05D006449 0.0e+00 1124.4 958 61.8
THA.LOC104818196 Tarenaya hassleriana HOM05D005223 ORTHO05D006449 0.0e+00 1124.0 1020 57.4
AL5G27880 Arabidopsis lyrata HOM05D005223 ORTHO05D006449 0.0e+00 1110.1 1024 56.9
Carub.0005s1465 Capsella rubella HOM05D005223 ORTHO05D006449 0.0e+00 1090.1 1024 56.1
AT3G48470 Arabidopsis thaliana HOM05D005223 ORTHO05D006449 0.0e+00 1080.5 1024 55.6
CARHR157230 Cardamine hirsuta HOM05D005223 ORTHO05D006449 0.0e+00 1078.9 1024 55.6
AUR62025728 Chenopodium quinoa HOM05D005223 ORTHO05D006449 0.0e+00 1078.5 1037 56.2
EL10Ac7g18074 Beta vulgaris HOM05D005223 ORTHO05D006449 0.0e+00 1075.8 1016 57.1
COL.COLO4_09267 Corchorus olitorius HOM05D005223 ORTHO05D006449 0.0e+00 1075.1 855 66.4
Sp5g13560 Schrenkiella parvula HOM05D005223 ORTHO05D006449 2.8e-311 1072.0 1023 55.4
AUR62001278 Chenopodium quinoa HOM05D005223 ORTHO05D006449 1.4e-310 1069.7 1026 56.1
C03p66340 Brassica napus HOM05D005223 ORTHO05D006449 1.6e-309 1066.2 1028 55.4
BcaC01g02344 Brassica carinata HOM05D005223 ORTHO05D006449 4.5e-309 1064.7 1028 55.4
Hund18539 Selenicereus undatus HOM05D005223 ORTHO05D006449 5.5e-307 1057.7 970 58.0
A06p27680 Brassica napus HOM05D005223 ORTHO05D006449 4.7e-306 1054.7 1024 54.8
BraA06t25704Z Brassica rapa HOM05D005223 ORTHO05D006449 1.0e-305 1053.5 1033 54.6
ATR0824G104 Amborella trichopoda HOM05D005223 ORTHO05D006449 4.0e-305 1051.6 1022 57.1
BcaB02g10650 Brassica carinata HOM05D005223 ORTHO05D006449 6.8e-305 1050.8 1030 54.5
Psat5g141880 Pisum sativum HOM05D005223 ORTHO05D006449 2.4e-302 1042.3 921 58.3
SGA_v2.0_scaffold50G18602 Striga asiatica HOM05D005223 ORTHO05D006449 4.1e-302 1041.6 1019 55.8
BolC3t18905H Brassica oleracea HOM05D005223 ORTHO05D006449 9.2e-302 1040.4 1048 54.0
CDE02G2587 Ceratophyllum demersum HOM05D005223 ORTHO05D006449 1.7e-300 1036.2 1028 54.4
Thhalv10010098m.g Eutrema salsugineum HOM05D005223 ORTHO05D006449 3.3e-283 978.8 1023 52.0
Zm00001eb246300 Zea mays HOM05D005223 ORTHO05D006449 3.5e-277 958.7 1007 50.4
Os02g0598800 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 6.0e-277 958.0 1005 51.3
Glyma.06G172900 Glycine max HOM05D005223 ORTHO05D006449 4.1e-270 935.3 771 61.6
arahy.Tifrunner.gnm1.ann1.9N92ER Arachis hypogaea HOM05D005223 ORTHO05D006449 4.0e-265 918.7 775 62.3
Eucgr.B00148 Eucalyptus grandis HOM05D005223 ORTHO05D006449 2.9e-263 912.5 1030 50.7
Actinidia19387 Actinidia chinensis HOM05D005223 ORTHO05D006449 1.1e-257 894.0 587 78.0
Os02g0599100 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 3.6e-205 719.5 648 58.2
Os02g0598400 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 6.1e-205 718.8 648 58.0
Aa31LG4G17060 Aethionema arabicum HOM05D005223 ORTHO05D006449 2.8e-189 666.8 633 55.9
Cpa.g.sc52.35 Carica papaya HOM05D005223 ORTHO05D006449 8.6e-183 645.2 570 62.6
Pp3c24_17160 Physcomitrium patens HOM05D005223 ORTHO05D006449 3.6e-165 586.6 997 37.4
Mapoly0075s0016 Marchantia polymorpha HOM05D005223 ORTHO05D006449 2.6e-163 580.5 1089 36.5
SHI10647 Sapria himalayana HOM05D005223 ORTHO05D006449 3.0e-151 540.4 528 56.6
Oeu007006.1 Olea europaea HOM05D005223 ORTHO05D006449 1.7e-146 524.6 347 76.1
SMO367G0489 Selaginella moellendorffii HOM05D005223 ORTHO05D006449 7.6e-139 499.2 970 36.2
Oeu057221.1 Olea europaea HOM05D005223 ORTHO05D006449 1.0e-111 409.1 390 55.1
CBR_g45764 Chara braunii HOM05D005223 ORTHO05D006449 1.4e-100 372.1 1113 28.6
FvH4_5g07461 Fragaria vesca HOM05D005223 ORTHO05D006449 3.5e-99 367.5 328 61.6
CBR_g52378 Chara braunii HOM05D005223 ORTHO05D006449 2.5e-97 361.3 1122 28.0
Aa31LG4G17050 Aethionema arabicum HOM05D005223 ORTHO05D006449 8.2e-93 346.3 439 44.0
Cpa.g.sc52.34 Carica papaya HOM05D005223 ORTHO05D006449 1.0e-82 312.8 368 47.8
FvH4_3g25520 Fragaria vesca HOM05D005223 ORTHO05D006449 9.8e-70 269.6 265 55.8
FvH4_5g07361 Fragaria vesca HOM05D005223 ORTHO05D006449 7.8e-59 233.4 563 32.3
MBI11_g36316_MAGBIO Magnolia biondii HOM05D005223 ORTHO05D006449 1.2e-56 226.1 217 58.1
Nn8g40428 Nelumbo nucifera HOM05D005223 ORTHO05D006449 2.8e-48 198.4 148 67.6
MD06G1153900 Malus domestica HOM05D005223 ORTHO05D006449 5.1e-42 177.6 149 63.8
FvH4_5g07460 Fragaria vesca HOM05D005223 ORTHO05D006449 6.2e-40 170.6 225 45.8
Lsat_1_v5_gn_0_22080 Lactuca sativa HOM05D005223 ORTHO05D006449 6.2e-40 170.6 149 53.0
SEGI_02888 Sequoiadendron giganteum HOM05D005223 ORTHO05D006449 9.0e-31 140.2 222 38.7
Actinidia25613 Actinidia chinensis HOM05D005223 ORTHO05D006449 1.0e-26 126.7 128 55.5
Nn7g38107 Nelumbo nucifera HOM05D005223 ORTHO05D006449 2.3e-26 125.6 103 58.3
QL10p005098 Quercus lobata HOM05D005223 ORTHO05D006449 2.3e-26 125.6 173 44.5
Cre03.g186550 Chlamydomonas reinhardtii HOM05D005223 ORTHO05D006449 1.5e-25 122.9 435 26.9
SalBow5G3736 Salvia bowleyana HOM05D005223 ORTHO05D006449 1.3e-24 119.8 79 68.4
SEGI_05777 Sequoiadendron giganteum HOM05D005223 ORTHO05D006449 6.2e-24 117.5 146 42.5
SalBow1G2179 Salvia bowleyana HOM05D005223 ORTHO05D006449 1.4e-20 106.3 67 70.1
ECA246G0437 Erigeron canadensis HOM05D005223 ORTHO05D006449 2.4e-20 105.5 224 37.5
SalBow1G1130 Salvia bowleyana HOM05D005223 ORTHO05D006449 7.1e-20 104.0 67 68.7
Lsat_1_v5_gn_1_114041 Lactuca sativa HOM05D005223 ORTHO05D006449 9.3e-20 103.6 111 46.8
Nn3g20975 Nelumbo nucifera HOM05D005223 ORTHO05D006449 5.1e-18 97.8 103 51.5
RcHm_v2.0_Chr0c39g0503251 Rosa chinensis HOM05D005223 ORTHO05D006449 3.4e-14 85.1 53 69.8
RcHm_v2.0_Chr1g0353191 Rosa chinensis HOM05D005223 ORTHO05D006449 3.4e-14 85.1 53 69.8
RcHm_v2.0_Chr1g0339741 Rosa chinensis HOM05D005223 ORTHO05D006449 5.8e-14 84.3 64 64.1
AagrBONN_evm.TU.Sc2ySwM_228.970 Anthoceros agrestis HOM05D005223 ORTHO05D006449 2.9e-13 82.0 252 28.6
HPP92_024695 Vanilla planifolia HOM05D005223 ORTHO05D006449 4.9e-13 81.3 153 35.9
DCAR_016747 Daucus carota HOM05D000329 ORTHO05D006449 6.5e-13 80.9 72 58.3
RcHm_v2.0_Chr4g0412201 Rosa chinensis HOM05D005223 ORTHO05D006449 1.2e-11 76.6 64 60.9
Nitab4.5_0004801g0040 Nicotiana tabacum HOM05D000112 ORTHO05D001327 7.9e-11 73.9 36 86.1
Actinidia19388 Actinidia chinensis HOM05D005223 ORTHO05D006449 3.7e-08 65.1 33 93.9
MD00G1179800 Malus domestica HOM05D005223 ORTHO05D006449 2.0e-06 59.3 52 55.8
MCO03G522 Micromonas commoda HOM05D005223 ORTHO05D006449 1.0e-05 57.0 982 19.1


User provided reference genes

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