Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037636 Camellia sinensis var. sinensis HOM05D011157 ORTHO05D013820 1.0e-210 736.5 372 100.0
CSS0030944 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.3e-128 461.5 636 49.2
CSS0039876 Camellia sinensis var. sinensis HOM05D011157 ORTHO05D013820 1.3e-43 181.4 194 59.8
CSS0047522 Camellia sinensis var. sinensis HOM05D011157 ORTHO05D013820 2.4e-42 177.2 183 58.5
CSS0024493 Camellia sinensis var. sinensis HOM05D011157 ORTHO05D013820 5.3e-42 176.0 208 53.8
QL02p002557 Quercus lobata HOM05D000002 ORTHO05D000001 6.9e-34 149.1 310 34.8
QL12p040299 Quercus lobata HOM05D000002 ORTHO05D000001 6.9e-34 149.1 310 34.8
CSS0050237 Camellia sinensis var. sinensis HOM05D011157 ORTHO05D013820 4.5e-33 146.4 377 35.8
CSS0031773 Camellia sinensis var. sinensis HOM05D011157 ORTHO05D013820 1.8e-29 134.4 306 36.3
CSS0006070 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.3e-28 130.2 304 39.8
CSS0013976 Camellia sinensis var. sinensis HOM05D011157 ORTHO05D013820 2.2e-27 127.5 291 36.1
CSS0031756 Camellia sinensis var. sinensis HOM05D011157 ORTHO05D013820 1.8e-26 124.4 168 48.2
CSS0036030 Camellia sinensis var. sinensis HOM05D011157 ORTHO05D013820 4.1e-26 123.2 286 37.4
CSS0000154 Camellia sinensis var. sinensis HOM05D011157 ORTHO05D013820 7.7e-25 119.0 285 34.7
CSS0038420 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.2e-24 117.5 336 33.0
CSS0019150 Camellia sinensis var. sinensis HOM05D000936 ORTHO05D005107 1.4e-21 108.2 219 38.8
Manes.08G119311 Manihot esculenta HOM05D011157 ORTHO05D000001 3.9e-21 106.7 218 36.2
CSS0002432 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.0e-20 104.4 350 31.4
Thecc.08G074900 Theobroma cacao HOM05D011157 ORTHO05D013820 2.0e-20 104.4 139 47.5
VMungo1215G3020 Vigna mungo HOM05D000002 ORTHO05D000001 2.0e-20 104.4 336 28.0
TAR332G0002 Trochodendron aralioides HOM05D000002 ORTHO05D000001 2.6e-20 104.0 466 26.8
CSS0039481 Camellia sinensis var. sinensis HOM05D011276 ORTHO05D013043 5.7e-20 102.8 230 37.8
VMungo1383G2495 Vigna mungo HOM05D002560 ORTHO05D003782 5.7e-20 102.8 292 28.8
Manes.10G073332 Manihot esculenta HOM05D000002 ORTHO05D000047 4.1e-18 96.7 146 43.8
Manes.18G145666 Manihot esculenta HOM05D000002 ORTHO05D000047 1.6e-17 94.7 145 42.1
VMungo1215G1550 Vigna mungo HOM05D004417 ORTHO05D005528 2.5e-15 87.4 261 29.1
SHI34552 Sapria himalayana HOM05D000002 ORTHO05D000001 3.2e-15 87.0 236 28.8
RcHm_v2.0_Chr6g0300481 Rosa chinensis HOM05D000002 ORTHO05D000001 1.6e-14 84.7 399 26.8
Oeu043920.1 Olea europaea HOM05D000002 ORTHO05D000001 2.1e-14 84.3 210 28.6
SHI16640 Sapria himalayana HOM05D000002 ORTHO05D000001 1.8e-13 81.3 187 31.6
VMungo0464G1194 Vigna mungo HOM05D000349 ORTHO05D001782 2.3e-13 80.9 274 27.4
Hma1.2p1_0164F.1_g073240 Hydrangea macrophylla HOM05D000002 ORTHO05D000047 5.2e-13 79.7 176 34.1
VMungo1215G2913 Vigna mungo HOM05D000070 ORTHO05D006344 5.2e-13 79.7 264 31.1
Lj1g0008265 Lotus japonicus HOM05D000002 ORTHO05D000047 6.7e-13 79.3 134 38.1
ClCG10G009560 Citrullus lanatus HOM05D000002 ORTHO05D000001 8.8e-13 79.0 169 34.3
Lj3g0020805 Lotus japonicus HOM05D000002 ORTHO05D000047 8.8e-13 79.0 134 38.1
CAN.G27.28 Capsicum annuum HOM05D005075 ORTHO05D007097 1.2e-12 78.6 100 42.0
ClCG01G012940 Citrullus lanatus HOM05D000002 ORTHO05D000001 1.2e-12 78.6 162 32.7
CSS0050489 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.5e-12 78.2 135 35.6
ClCG07G007670 Citrullus lanatus HOM05D000002 ORTHO05D000001 2.6e-12 77.4 179 33.0
SHI04754 Sapria himalayana HOM05D000002 ORTHO05D000001 4.4e-12 76.6 189 30.2
Rhsim06G0133100 Rhododendron simsii HOM05D004563 ORTHO05D002944 5.7e-12 76.3 282 25.2
HPP92_028162 Vanilla planifolia HOM05D005168 ORTHO05D006358 5.7e-12 76.3 181 33.7
Atru.ctg802.2 Acer truncatum HOM05D000002 ORTHO05D000001 7.5e-12 75.9 305 25.6
ClCG11G008610 Citrullus lanatus HOM05D000002 ORTHO05D000001 7.5e-12 75.9 397 25.7
ClCG02G008720 Citrullus lanatus HOM05D000002 ORTHO05D000001 9.7e-12 75.5 259 29.7
VMungo1309G0587 Vigna mungo HOM05D000002 ORTHO05D000001 1.3e-11 75.1 279 27.2
CSS0029482 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.7e-11 74.7 157 33.8
SHI21519 Sapria himalayana HOM05D000002 ORTHO05D000001 2.2e-11 74.3 290 25.5
SHI14083 Sapria himalayana HOM05D000002 ORTHO05D000001 3.7e-11 73.6 221 28.1
SHI26999 Sapria himalayana HOM05D000002 ORTHO05D000001 3.7e-11 73.6 191 31.9
SHI07176 Sapria himalayana HOM05D000002 ORTHO05D000001 4.8e-11 73.2 220 29.1
SHI25917 Sapria himalayana HOM05D000002 ORTHO05D000001 4.8e-11 73.2 285 24.2
SEGI_08785 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 4.8e-11 73.2 252 27.8
SHI23559 Sapria himalayana HOM05D000002 ORTHO05D000001 8.2e-11 72.4 203 27.6
SHI27433 Sapria himalayana HOM05D000002 ORTHO05D000001 8.2e-11 72.4 197 29.9
CSS0004866 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 1.1e-10 72.0 148 32.4
Ca_19997_v3 Cicer arietinum L. HOM05D000004 ORTHO05D000224 1.1e-10 72.0 166 33.7
SHI31170 Sapria himalayana HOM05D000002 ORTHO05D000001 1.4e-10 71.6 158 32.9
CSS0017511 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 1.8e-10 71.2 148 32.4
PSO832G2869 Papaver somniferum HOM05D000002 ORTHO05D000001 1.8e-10 71.2 212 29.2
CSS0004984 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.4e-10 70.9 148 32.4
CSS0005907 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 2.4e-10 70.9 226 32.3
CSS0050398 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 2.4e-10 70.9 148 32.4
Nn5g30897 Nelumbo nucifera HOM05D000002 ORTHO05D000047 2.4e-10 70.9 134 34.3
PSO384G2910 Papaver somniferum HOM05D000002 ORTHO05D000001 2.4e-10 70.9 198 29.3
CSS0010794 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.1e-10 70.5 148 32.4
CSS0011005 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 3.1e-10 70.5 148 32.4
CSS0032452 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 3.1e-10 70.5 148 32.4
CSS0038278 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 3.1e-10 70.5 148 32.4
CSS0041031 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 3.1e-10 70.5 148 32.4
CSS0048989 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 3.1e-10 70.5 148 32.4
SHI27171 Sapria himalayana HOM05D000002 ORTHO05D000001 3.1e-10 70.5 250 27.2
SHI32183 Sapria himalayana HOM05D000002 ORTHO05D000001 4.1e-10 70.1 287 24.0
CSS0000519 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 5.3e-10 69.7 148 31.8
SHI08885 Sapria himalayana HOM05D000002 ORTHO05D000001 7.0e-10 69.3 246 25.6
SHI20378 Sapria himalayana HOM05D000002 ORTHO05D009886 7.0e-10 69.3 303 31.0
CSS0017883 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 9.1e-10 68.9 148 31.8
SHI03750 Sapria himalayana HOM05D000002 ORTHO05D000001 9.1e-10 68.9 291 26.5
PSO210G3997 Papaver somniferum HOM05D000002 ORTHO05D000001 1.2e-09 68.6 155 34.2
Nn2g11309 Nelumbo nucifera HOM05D000002 ORTHO05D000047 2.0e-09 67.8 136 36.8
SHI11625 Sapria himalayana HOM05D000002 ORTHO05D000001 2.0e-09 67.8 245 26.1
SEGI_01318 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 2.7e-09 67.4 262 26.0
SHI22286 Sapria himalayana HOM05D000002 ORTHO05D000001 3.5e-09 67.0 259 27.0
RcHm_v2.0_Chr3g0451051 Rosa chinensis HOM05D000002 ORTHO05D000001 4.5e-09 66.6 301 25.2
CSS0020833 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 5.9e-09 66.2 222 26.6
Oeu054585.1 Olea europaea HOM05D000002 ORTHO05D000001 7.7e-09 65.9 72 52.8
SHI31578 Sapria himalayana HOM05D000002 ORTHO05D000001 1.0e-08 65.5 135 34.8
CiPaw.01G278500 Carya illinoinensis HOM05D000002 ORTHO05D000001 1.3e-08 65.1 137 34.3
MD02G1250500 Malus domestica HOM05D000002 ORTHO05D000001 1.3e-08 65.1 241 24.5
RcHm_v2.0_Chr3g0453371 Rosa chinensis HOM05D000002 ORTHO05D000001 1.3e-08 65.1 307 25.4
SHI03307 Sapria himalayana HOM05D000002 ORTHO05D000001 1.3e-08 65.1 282 25.5
SHI07494 Sapria himalayana HOM05D000002 ORTHO05D000001 1.3e-08 65.1 216 26.9
Oeu020542.1 Olea europaea HOM05D000002 ORTHO05D000001 1.7e-08 64.7 72 54.2
SHI20574 Sapria himalayana HOM05D000002 ORTHO05D000001 1.7e-08 64.7 179 30.7
SHI23873 Sapria himalayana HOM05D000002 ORTHO05D000001 1.7e-08 64.7 242 25.6
Sopen10g025530 Solanum pennellii HOM05D000002 ORTHO05D000001 1.7e-08 64.7 280 26.1
CSS0014458 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.2e-08 64.3 224 28.6
ECA236G1318 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.2e-08 64.3 245 28.6
RcHm_v2.0_Chr2g0166821 Rosa chinensis HOM05D000002 ORTHO05D000001 2.2e-08 64.3 322 24.5
SHI05777 Sapria himalayana HOM05D000002 ORTHO05D000001 2.2e-08 64.3 212 25.9
CSS0010335 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 2.9e-08 63.9 149 31.5
CSS0020802 Camellia sinensis var. sinensis HOM05D011276 ORTHO05D013043 2.9e-08 63.9 75 49.3
FvH4_2g17332 Fragaria vesca HOM05D000002 ORTHO05D000001 2.9e-08 63.9 207 26.1
Oeu028933.2 Olea europaea HOM05D000002 ORTHO05D000001 2.9e-08 63.9 46 65.2
RcHm_v2.0_Chr6g0303211 Rosa chinensis HOM05D000002 ORTHO05D000001 2.9e-08 63.9 217 29.0
Sopen12g001410 Solanum pennellii HOM05D000002 ORTHO05D000001 2.9e-08 63.9 280 26.1
RcHm_v2.0_Chr3g0463471 Rosa chinensis HOM05D000002 ORTHO05D000001 3.8e-08 63.5 243 26.3
SHI03262 Sapria himalayana HOM05D000002 ORTHO05D000001 3.8e-08 63.5 251 24.7
SHI27511 Sapria himalayana HOM05D011157 ORTHO05D013820 3.8e-08 63.5 94 43.6
Sopen05g030290 Solanum pennellii HOM05D000002 ORTHO05D000001 3.8e-08 63.5 280 26.1
RcHm_v2.0_Chr1g0357701 Rosa chinensis HOM05D000002 ORTHO05D000001 5.0e-08 63.2 220 27.7
RcHm_v2.0_Chr3g0461531 Rosa chinensis HOM05D000002 ORTHO05D000001 5.0e-08 63.2 307 24.8
RcHm_v2.0_Chr7g0196171 Rosa chinensis HOM05D000002 ORTHO05D000001 5.0e-08 63.2 307 24.8
SHI48864 Sapria himalayana HOM05D000002 ORTHO05D000001 5.0e-08 63.2 146 34.2
Sed0011426 Sechium edule HOM05D000002 ORTHO05D000001 5.0e-08 63.2 218 26.1
TPR.G19091 Trifolium pratense HOM05D000002 ORTHO05D000001 6.5e-08 62.8 175 26.3
Medtr8g011380 Medicago truncatula HOM05D011157 ORTHO05D013820 8.5e-08 62.4 58 53.4
Oeu028574.1 Olea europaea HOM05D000002 ORTHO05D000047 8.5e-08 62.4 131 35.1
CSS0008463 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 1.1e-07 62.0 155 31.6
SHI03814 Sapria himalayana HOM05D000002 ORTHO05D000001 1.1e-07 62.0 245 26.1
CSS0045239 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000047 1.5e-07 61.6 164 36.6
Manes.06G030033 Manihot esculenta HOM05D000002 ORTHO05D000047 1.5e-07 61.6 83 44.6
SHI27844 Sapria himalayana HOM05D000002 ORTHO05D000001 1.5e-07 61.6 199 26.6
SHI50147 Sapria himalayana HOM05D000002 ORTHO05D000001 1.5e-07 61.6 229 25.3
Manes.09G097750 Manihot esculenta HOM05D000002 ORTHO05D000047 1.9e-07 61.2 83 44.6
Oeu030761.1 Olea europaea HOM05D000164 ORTHO05D000096 1.9e-07 61.2 89 47.2
PSO782G4628 Papaver somniferum HOM05D000002 ORTHO05D000001 1.9e-07 61.2 147 33.3
RcHm_v2.0_Chr5g0078371 Rosa chinensis HOM05D000002 ORTHO05D000001 1.9e-07 61.2 322 26.1
Sopen08g013650 Solanum pennellii HOM05D000002 ORTHO05D000001 1.9e-07 61.2 157 31.2
PSO675G3936 Papaver somniferum HOM05D000002 ORTHO05D000001 2.5e-07 60.8 148 34.5
SHI09366 Sapria himalayana HOM05D000002 ORTHO05D000001 2.5e-07 60.8 410 24.1
SHI50117 Sapria himalayana HOM05D000002 ORTHO05D000001 2.5e-07 60.8 229 25.3
Oeu052091.1 Olea europaea HOM05D000002 ORTHO05D000001 3.2e-07 60.5 58 55.2
PSO017G4051 Papaver somniferum HOM05D000002 ORTHO05D000001 4.2e-07 60.1 131 34.4
RcHm_v2.0_Chr4g0404531 Rosa chinensis HOM05D000002 ORTHO05D000001 4.2e-07 60.1 217 28.1
AUR62008603 Chenopodium quinoa HOM05D000002 ORTHO05D000001 5.5e-07 59.7 160 31.2
ClCG09G007490 Citrullus lanatus HOM05D000002 ORTHO05D000001 5.5e-07 59.7 148 32.4
MD05G1287700 Malus domestica HOM05D000446 ORTHO05D000001 5.5e-07 59.7 201 26.4
Manes.07G095804 Manihot esculenta HOM05D000002 ORTHO05D000047 5.5e-07 59.7 82 45.1
Manes.15G035050 Manihot esculenta HOM05D007305 ORTHO05D009886 5.5e-07 59.7 108 38.0
Oeu026778.1 Olea europaea HOM05D000002 ORTHO05D000001 5.5e-07 59.7 123 32.5
ClCG00G000760 Citrullus lanatus HOM05D000002 ORTHO05D000001 7.2e-07 59.3 185 28.1
RcHm_v2.0_Chr3g0461981 Rosa chinensis HOM05D000002 ORTHO05D000001 7.2e-07 59.3 217 29.0
SHI00069 Sapria himalayana HOM05D000002 ORTHO05D009886 7.2e-07 59.3 167 32.3
SHI26716 Sapria himalayana HOM05D000002 ORTHO05D000001 7.2e-07 59.3 243 28.0
Sopen01g021280 Solanum pennellii HOM05D000002 ORTHO05D000001 7.2e-07 59.3 263 27.4
Os12g0148400 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 9.4e-07 58.9 58 53.4
SHI07334 Sapria himalayana HOM05D000002 ORTHO05D000001 9.4e-07 58.9 213 30.5
SHI32815 Sapria himalayana HOM05D000002 ORTHO05D000001 9.4e-07 58.9 220 26.8
SEGI_08695 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 9.4e-07 58.9 298 24.2
CSS0031468 Camellia sinensis var. sinensis HOM05D011276 ORTHO05D013043 1.2e-06 58.5 42 64.3
SHI21600 Sapria himalayana HOM05D000002 ORTHO05D009886 1.2e-06 58.5 311 25.7
Os01g0909600 Oryza sativa ssp. japonica HOM05D000002 ORTHO05D000001 1.6e-06 58.2 50 52.0
RcHm_v2.0_Chr6g0298961 Rosa chinensis HOM05D000002 ORTHO05D000001 1.6e-06 58.2 219 27.9
SHI26071 Sapria himalayana HOM05D000002 ORTHO05D009886 1.6e-06 58.2 100 37.0
FvH4_2g24232 Fragaria vesca HOM05D000002 ORTHO05D000001 2.1e-06 57.8 62 48.4
SHI10028 Sapria himalayana HOM05D000002 ORTHO05D000001 2.1e-06 57.8 133 30.1
SHI16752 Sapria himalayana HOM05D000002 ORTHO05D000001 2.1e-06 57.8 273 24.9
SHI29618 Sapria himalayana HOM05D000002 ORTHO05D000001 2.1e-06 57.8 188 27.7
ECA248G0752 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.7e-06 57.4 125 31.2
RcHm_v2.0_Chr5g0041201 Rosa chinensis HOM05D000002 ORTHO05D000001 2.7e-06 57.4 228 28.1
RcHm_v2.0_Chr5g0079271 Rosa chinensis HOM05D000002 ORTHO05D000001 2.7e-06 57.4 228 28.1
SHI09477 Sapria himalayana HOM05D021190 ORTHO05D000001 2.7e-06 57.4 102 33.3
SEGI_21402 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 2.7e-06 57.4 340 23.8
Manes.13G009802 Manihot esculenta HOM05D000002 ORTHO05D000001 3.6e-06 57.0 148 31.1
ClCG07G006100 Citrullus lanatus HOM05D000002 ORTHO05D000001 4.7e-06 56.6 240 27.1
ECA248G1325 Erigeron canadensis HOM05D000002 ORTHO05D000001 4.7e-06 56.6 119 31.1
MD07G1274600 Malus domestica HOM05D000002 ORTHO05D000001 4.7e-06 56.6 128 34.4
Oeu024461.1 Olea europaea HOM05D000002 ORTHO05D000001 4.7e-06 56.6 61 49.2
RcHm_v2.0_Chr1g0377711 Rosa chinensis HOM05D000002 ORTHO05D000001 4.7e-06 56.6 62 41.9
SEGI_27781 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 4.7e-06 56.6 298 23.8
SEGI_38276 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 4.7e-06 56.6 55 43.6
CSS0046706 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.1e-06 56.2 293 27.3
CSS0048486 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.1e-06 56.2 212 24.5
MD11G1138200 Malus domestica HOM05D000002 ORTHO05D000001 6.1e-06 56.2 116 30.2
Manes.11G086565 Manihot esculenta HOM05D000002 ORTHO05D000047 6.1e-06 56.2 244 25.8
Oeu046724.1 Olea europaea HOM05D000002 ORTHO05D000001 6.1e-06 56.2 52 51.9
RcHm_v2.0_Chr2g0101201 Rosa chinensis HOM05D000002 ORTHO05D000001 6.1e-06 56.2 238 26.5
CSS0008627 Camellia sinensis var. sinensis HOM05D011276 ORTHO05D013043 8.0e-06 55.8 75 45.3
CSS0028529 Camellia sinensis var. sinensis HOM05D011276 ORTHO05D013043 8.0e-06 55.8 75 45.3
AUR62010580 Chenopodium quinoa HOM05D001123 ORTHO05D000001 8.0e-06 55.8 110 36.4
ECA240G2129 Erigeron canadensis HOM05D000002 ORTHO05D000001 8.0e-06 55.8 111 31.5
Sopen02g012540 Solanum pennellii HOM05D000002 ORTHO05D000001 8.0e-06 55.8 171 25.1
Sopen12g020390 Solanum pennellii HOM05D000002 ORTHO05D000001 8.0e-06 55.8 171 25.1
TPR.G22101 Trifolium pratense HOM05D000002 ORTHO05D050816 8.0e-06 55.8 158 28.5


User provided reference genes

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