Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037615 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 2.8e-233 811.6 416 100.0
CSS0024892 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 1.4e-205 719.5 417 89.0
CSS0026498 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 2.5e-194 682.2 404 86.9
CSS0026374 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 8.0e-172 607.4 369 87.0
Actinidia02708 Actinidia chinensis HOM05D006074 ORTHO05D008728 1.1e-165 587.0 417 75.8
Dinv33738 Davidia involucrata HOM05D006074 ORTHO05D008728 1.4e-163 580.1 417 72.9
Rhsim08G0067900 Rhododendron simsii HOM05D006074 ORTHO05D008728 2.4e-160 569.3 412 73.5
vmacro18203 Vaccinium macrocarpon HOM05D006074 ORTHO05D008728 4.7e-156 555.1 404 73.3
Hma1.2p1_0449F.1_g155300 Hydrangea macrophylla HOM05D006074 ORTHO05D008728 2.1e-148 529.6 359 74.9
TAR729G0002 Trochodendron aralioides HOM05D006074 ORTHO05D008728 5.2e-147 525.0 427 66.0
Lju41C23G10 Lonicera japonica HOM05D006074 ORTHO05D008728 1.5e-146 523.5 423 68.1
Oeu060929.1 Olea europaea HOM05D006074 ORTHO05D008728 1.3e-145 520.4 424 65.3
TAR622G0709 Trochodendron aralioides HOM05D006074 ORTHO05D008728 3.2e-144 515.8 360 73.3
FAN02G2663 Fragaria x ananassa HOM05D006074 ORTHO05D008728 5.4e-144 515.0 414 66.4
QL02p081203 Quercus lobata HOM05D006074 ORTHO05D008728 5.9e-143 511.5 358 72.9
RcHm_v2.0_Chr2g0168871 Rosa chinensis HOM05D006074 ORTHO05D008728 6.6e-142 508.1 419 65.4
CAN.G579.8 Capsicum annuum HOM05D006074 ORTHO05D008728 8.6e-142 507.7 417 63.5
MBI02_g10680_MAGBIO Magnolia biondii HOM05D006074 ORTHO05D008728 8.6e-142 507.7 379 69.4
MD09G1048800 Malus domestica HOM05D006074 ORTHO05D008728 1.5e-141 506.9 415 63.6
GSVIVG01011374001 Vitis vinifera HOM05D006074 ORTHO05D008728 3.3e-141 505.8 403 65.0
Migut.H00904 Erythranthe guttata HOM05D006074 ORTHO05D008728 1.2e-140 503.8 420 63.6
PSO832G2479 Papaver somniferum HOM05D006074 ORTHO05D008728 6.2e-140 501.5 403 64.5
Potri.017G080300 Populus trichocarpa HOM05D006074 ORTHO05D008728 6.2e-140 501.5 431 64.0
Sabra17G0072000 Salix brachista HOM05D006074 ORTHO05D008728 8.0e-140 501.1 426 62.4
FvH4_6g49080 Fragaria vesca HOM05D006074 ORTHO05D008728 4.0e-139 498.8 361 70.9
Prupe.3G270100 Prunus persica HOM05D006074 ORTHO05D008728 4.0e-139 498.8 361 70.4
CiPaw.03G029000 Carya illinoinensis HOM05D006074 ORTHO05D008728 5.2e-139 498.4 360 70.3
Aqoxy3G03321 Aquilegia oxysepala HOM05D006074 ORTHO05D008728 6.8e-139 498.0 415 63.1
PSO591G0110 Papaver somniferum HOM05D006074 ORTHO05D008728 7.5e-138 494.6 383 65.8
Psat1g075640 Pisum sativum HOM05D006074 ORTHO05D008728 1.7e-137 493.4 380 67.9
Medtr1g039990 Medicago truncatula HOM05D006074 ORTHO05D008728 3.7e-137 492.3 360 70.3
PGSC0003DMG400009217 Solanum tuberosum HOM05D006074 ORTHO05D008728 1.1e-136 490.7 417 62.1
Duzib187G1598 Durio zibethinus HOM05D006074 ORTHO05D008728 9.2e-136 487.6 360 69.2
SalBow1G4287 Salvia bowleyana HOM05D006074 ORTHO05D008728 9.2e-136 487.6 420 61.7
Phvul.004G027100 Phaseolus vulgaris HOM05D006074 ORTHO05D008728 2.0e-135 486.5 360 70.3
Sopen03g012680 Solanum pennellii HOM05D006074 ORTHO05D008728 2.7e-135 486.1 361 68.7
ClCG10G014940 Citrullus lanatus HOM05D006074 ORTHO05D008728 3.5e-135 485.7 359 69.4
Thecc.04G099800 Theobroma cacao HOM05D006074 ORTHO05D008728 1.3e-134 483.8 360 68.6
Lalb_Chr21g0318901 Lupinus albus HOM05D006074 ORTHO05D008728 6.6e-134 481.5 360 68.1
Solyc03g058860.3 Solanum lycopersicum HOM05D006074 ORTHO05D008728 1.1e-133 480.7 361 68.1
Lj2g0007765 Lotus japonicus HOM05D006074 ORTHO05D008728 2.5e-133 479.6 360 69.2
CsaV3_3G041590 Cucumis sativus L. HOM05D006074 ORTHO05D008728 3.3e-133 479.2 359 68.2
ATR0564G024 Amborella trichopoda HOM05D006074 ORTHO05D008728 4.3e-133 478.8 360 68.1
HanXRQChr09g0265461 Helianthus annuus HOM05D006074 ORTHO05D008728 4.7e-132 475.3 361 68.4
Lsat_1_v5_gn_4_177200 Lactuca sativa HOM05D006074 ORTHO05D008728 4.7e-132 475.3 364 68.7
arahy.Tifrunner.gnm1.ann1.V4TPJI Arachis hypogaea HOM05D006074 ORTHO05D008728 6.2e-132 474.9 360 68.1
arahy.Tifrunner.gnm1.ann1.1Y4ZQN Arachis hypogaea HOM05D006074 ORTHO05D008728 1.1e-131 474.2 360 68.1
MELO3C009883.2 Cucumis melo HOM05D006074 ORTHO05D008728 1.4e-131 473.8 359 68.0
Gohir.A07G215200 Gossypium hirsutum HOM05D006074 ORTHO05D008728 3.1e-131 472.6 360 67.2
Cc07_g03180 Coffea canephora HOM05D006074 ORTHO05D008728 2.0e-130 469.9 361 68.7
Gorai.001G256400 Gossypium raimondii HOM05D006074 ORTHO05D008728 9.8e-130 467.6 386 63.2
PGR083G0972 Punica granatum HOM05D006074 ORTHO05D008728 1.3e-129 467.2 362 67.4
Cpa.g.sc14.19 Carica papaya HOM05D006074 ORTHO05D008728 3.7e-129 465.7 451 56.5
VMungo0464G0585 Vigna mungo HOM05D006074 ORTHO05D008728 3.7e-129 465.7 342 70.5
COL.COLO4_36112 Corchorus olitorius HOM05D006074 ORTHO05D008728 1.4e-128 463.8 349 69.3
CANSAT64G1183 Cannabis sativa HOM05D006074 ORTHO05D008728 2.4e-128 463.0 359 65.7
CANSAT64G2140 Cannabis sativa HOM05D006074 ORTHO05D008728 2.4e-128 463.0 433 59.1
Sc14g0005980 Simmondsia chinensis HOM05D006074 ORTHO05D008728 1.2e-127 460.7 360 66.9
Eucgr.J01218 Eucalyptus grandis HOM05D006074 ORTHO05D008728 4.6e-127 458.8 361 66.2
Atru.BG.207.p Acer truncatum HOM05D006074 ORTHO05D008728 7.8e-127 458.0 358 67.0
BcaC06g30896 Brassica carinata HOM05D006074 ORTHO05D008728 7.8e-127 458.0 360 63.9
AT3G28760 Arabidopsis thaliana HOM05D006074 ORTHO05D008728 1.0e-126 457.6 360 64.2
Sp2g17410 Schrenkiella parvula HOM05D006074 ORTHO05D008728 6.6e-126 454.9 360 63.9
DCAR_021653 Daucus carota HOM05D006074 ORTHO05D008728 8.6e-126 454.5 361 65.4
C07p37700 Brassica napus HOM05D006074 ORTHO05D008728 1.1e-125 454.1 360 63.3
BolC7t44287H Brassica oleracea HOM05D006074 ORTHO05D008728 1.5e-125 453.8 360 63.1
AUR62038861 Chenopodium quinoa HOM05D006074 ORTHO05D008728 2.5e-125 453.0 410 59.8
Sed0009974 Sechium edule HOM05D006074 ORTHO05D008728 2.5e-125 453.0 347 65.7
THA.LOC104823933 Tarenaya hassleriana HOM05D006074 ORTHO05D008728 2.5e-125 453.0 361 64.0
Gohir.D07G222100 Gossypium hirsutum HOM05D006074 ORTHO05D008728 3.3e-125 452.6 360 65.3
ECA232G4667 Erigeron canadensis HOM05D006074 ORTHO05D008728 7.3e-125 451.4 354 68.1
A06p40350 Brassica napus HOM05D006074 ORTHO05D008728 1.2e-124 450.7 360 62.2
BraA06t26953Z Brassica rapa HOM05D006074 ORTHO05D008728 1.2e-124 450.7 360 62.2
Carub.0005s0731 Capsella rubella HOM05D006074 ORTHO05D008728 2.1e-124 449.9 361 63.4
TWI34G1337 Tripterygium wilfordii HOM05D006074 ORTHO05D008728 2.1e-124 449.9 359 65.2
Aa31LG2G4460 Aethionema arabicum HOM05D006074 ORTHO05D008728 2.8e-124 449.5 360 61.7
EL10Ac2g02949 Beta vulgaris HOM05D006074 ORTHO05D008728 2.8e-124 449.5 360 63.9
Nitab4.5_0003081g0050 Nicotiana tabacum HOM05D006074 ORTHO05D008728 2.8e-124 449.5 370 63.0
AUR62031615 Chenopodium quinoa HOM05D006074 ORTHO05D008728 3.6e-124 449.1 410 60.0
AL5G18490 Arabidopsis lyrata HOM05D006074 ORTHO05D008728 6.2e-124 448.4 364 62.9
Nitab4.5_0000002g0350 Nicotiana tabacum HOM05D006074 ORTHO05D008728 6.2e-124 448.4 370 62.7
BcaC06g33639 Brassica carinata HOM05D006074 ORTHO05D008728 8.1e-124 448.0 360 62.8
Nn4g23084 Nelumbo nucifera HOM05D006074 ORTHO05D008728 7.6e-122 441.4 378 63.2
Peaxi162Scf00451g00822 Petunia axillaris HOM05D006074 ORTHO05D008728 2.9e-121 439.5 417 58.3
Hund15626 Selenicereus undatus HOM05D006074 ORTHO05D008728 3.0e-118 429.5 365 63.8
Glyma.19G020800 Glycine max HOM05D006074 ORTHO05D008728 5.1e-118 428.7 360 62.2
Os03g0170300 Oryza sativa ssp. japonica HOM05D006074 ORTHO05D008728 1.1e-117 427.6 362 61.6
TPR.G10370 Trifolium pratense HOM05D006074 ORTHO05D008728 4.0e-115 419.1 321 68.5
Zm00001eb402270 Zea mays HOM05D006074 ORTHO05D008728 2.6e-114 416.4 362 60.5
Ca_04272_v3 Cicer arietinum L. HOM05D006074 ORTHO05D008728 5.8e-114 415.2 328 66.8
SGA_v2.0_scaffold59G20672 Striga asiatica HOM05D006074 ORTHO05D008728 2.1e-111 406.8 324 64.2
Manes.15G177000 Manihot esculenta HOM05D006074 ORTHO05D008728 7.3e-109 398.3 256 75.0
Thhalv10004593m.g Eutrema salsugineum HOM05D006074 ORTHO05D008728 2.1e-103 380.2 332 59.3
Pp3c9_19570 Physcomitrium patens HOM05D006074 ORTHO05D008728 2.9e-97 359.8 360 51.9
AagrBONN_evm.TU.Sc2ySwM_228.462 Anthoceros agrestis HOM05D006074 ORTHO05D008728 6.4e-97 358.6 364 52.5
Pp3c10_1080 Physcomitrium patens HOM05D006074 ORTHO05D008728 1.5e-93 347.4 364 51.1
unitig_21.g20922 Utricularia gibba HOM05D006074 ORTHO05D008728 3.2e-88 329.7 250 63.2
Mapoly0005s0075 Marchantia polymorpha HOM05D006074 ORTHO05D008728 1.5e-85 320.9 355 49.3
CDE02G2631 Ceratophyllum demersum HOM05D006074 ORTHO05D008728 2.8e-84 316.6 259 61.8
FAN14G0759 Fragaria x ananassa HOM05D006074 ORTHO05D008728 5.3e-75 285.8 385 48.3
Glyma.13G064100 Glycine max HOM05D006074 ORTHO05D008728 3.9e-70 269.6 266 58.3
Pp3c15_19890 Physcomitrium patens HOM05D006074 ORTHO05D008728 8.8e-70 268.5 347 44.4
Ciclev10012867m.g Citrus clementina HOM05D006074 ORTHO05D008728 2.1e-63 247.3 194 68.0
MCO08G127 Micromonas commoda HOM05D006074 ORTHO05D008728 1.1e-59 235.0 366 40.2
Pp3c1_20750 Physcomitrium patens HOM05D006074 ORTHO05D020966 2.6e-58 230.3 420 35.7
Pp3c1_20753 Physcomitrium patens HOM05D006074 ORTHO05D020966 2.6e-58 230.3 420 35.7
CARHR151760 Cardamine hirsuta HOM05D006074 ORTHO05D008728 2.5e-56 223.8 207 54.6
SEGI_14685 Sequoiadendron giganteum HOM05D006074 ORTHO05D008728 3.2e-56 223.4 168 63.1
Pp3c2_18540 Physcomitrium patens HOM05D006074 ORTHO05D020966 4.2e-56 223.0 419 34.4
Lsat_1_v5_gn_4_177220 Lactuca sativa HOM05D006074 ORTHO05D008728 1.0e-54 218.4 187 63.6
Pp3c10_2120 Physcomitrium patens HOM05D006074 ORTHO05D020966 6.8e-46 189.1 525 27.8
Haze_18216 Corylus avellana HOM05D000132 ORTHO05D000058 2.8e-44 183.7 204 52.5
Cre05.g248250 Chlamydomonas reinhardtii HOM05D006074 ORTHO05D008728 7.0e-43 179.1 351 37.3
Lsat_1_v5_gn_0_26800 Lactuca sativa HOM05D006074 ORTHO05D008728 1.1e-40 171.8 190 50.5
PRCOL_00003957 Prasinoderma coloniale HOM05D006074 ORTHO05D008728 7.5e-37 159.1 372 34.7
Lsat_1_v5_gn_3_53141 Lactuca sativa HOM05D006074 ORTHO05D008728 1.2e-34 151.8 115 64.3
Actinidia17537 Actinidia chinensis HOM05D006074 ORTHO05D026256 1.8e-22 111.3 68 80.9
Sabra17G0081400 Salix brachista HOM05D006074 ORTHO05D008728 1.3e-20 105.1 71 76.1
Atru.chr3.96 Acer truncatum HOM05D006074 ORTHO05D026256 2.4e-19 100.9 70 74.3
PGSC0003DMG400013970 Solanum tuberosum HOM05D006074 ORTHO05D008728 3.3e-16 90.5 61 63.9
CDE02G1972 Ceratophyllum demersum HOM05D006074 ORTHO05D026256 2.8e-15 87.4 66 68.2
Pp3c23_20410 Physcomitrium patens HOM05D006074 ORTHO05D026055 2.0e-13 81.3 181 32.0
Pp3c20_4730 Physcomitrium patens HOM05D006074 ORTHO05D026055 4.9e-12 76.6 178 34.3
HanXRQChr09g0253281 Helianthus annuus HOM05D006074 ORTHO05D008728 3.2e-11 73.9 53 73.6
Pp3c8_20190 Physcomitrium patens HOM05D006074 ORTHO05D026055 5.6e-08 63.2 186 31.2
Pp3c20_10280 Physcomitrium patens HOM05D006074 ORTHO05D026055 5.2e-06 56.6 179 24.6


User provided reference genes

Program Settings