Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037604 Camellia sinensis var. sinensis HOM05D001035 ORTHO05D001045 1.2e-55 219.5 107 100.0
Dinv37832 Davidia involucrata HOM05D001035 ORTHO05D001045 3.7e-20 101.7 66 75.8
Dinv20394 Davidia involucrata HOM05D001035 ORTHO05D001045 4.8e-20 101.3 66 75.8
vmacro22016 Vaccinium macrocarpon HOM05D001035 ORTHO05D001045 5.8e-18 94.4 65 73.8
Rhsim12G0212500 Rhododendron simsii HOM05D001035 ORTHO05D001045 4.9e-17 91.3 65 72.3
Actinidia24440 Actinidia chinensis HOM05D001035 ORTHO05D001045 1.9e-16 89.4 61 73.8
TAR624G0625 Trochodendron aralioides HOM05D001035 ORTHO05D001045 3.2e-16 88.6 66 68.2
Hma1.2p1_0229F.1_g096980 Hydrangea macrophylla HOM05D001035 ORTHO05D001045 1.2e-15 86.7 66 68.2
Actinidia21821 Actinidia chinensis HOM05D001035 ORTHO05D001045 6.0e-15 84.3 62 69.4
Rhsim08G0242700 Rhododendron simsii HOM05D001035 ORTHO05D001045 6.0e-15 84.3 75 61.3
Actinidia26004 Actinidia chinensis HOM05D001035 ORTHO05D001045 6.7e-14 80.9 66 66.7
Nn6g35629 Nelumbo nucifera HOM05D001035 ORTHO05D001045 6.7e-14 80.9 90 48.9
Solyc03g123520.3 Solanum lycopersicum HOM05D001035 ORTHO05D001045 3.3e-13 78.6 66 54.5
Nn8g38532 Nelumbo nucifera HOM05D001035 ORTHO05D001045 4.3e-13 78.2 85 49.4
vmacro15072 Vaccinium macrocarpon HOM05D001035 ORTHO05D001045 5.6e-13 77.8 63 66.7
TAR383G0664 Trochodendron aralioides HOM05D001035 ORTHO05D001045 7.4e-13 77.4 67 58.2
Sopen03g041290 Solanum pennellii HOM05D001035 ORTHO05D001045 1.3e-12 76.6 66 53.0
PGSC0003DMG400009144 Solanum tuberosum HOM05D001035 ORTHO05D001045 1.3e-12 76.6 66 53.0
Nitab4.5_0009947g0030 Nicotiana tabacum HOM05D001035 ORTHO05D001045 3.7e-12 75.1 66 51.5
MBI19_g36228_MAGBIO Magnolia biondii HOM05D001035 ORTHO05D001045 4.8e-12 74.7 68 54.4
Prupe.3G034500 Prunus persica HOM05D001035 ORTHO05D001045 4.8e-12 74.7 67 59.7
CAN.G790.68 Capsicum annuum HOM05D001035 ORTHO05D001045 6.2e-12 74.3 66 51.5
ATR0317G054 Amborella trichopoda HOM05D001035 ORTHO05D001045 8.2e-12 73.9 68 54.4
Cfa003488 Carpinus fangiana HOM05D001035 ORTHO05D001045 1.1e-11 73.6 64 62.5
Haze_16107 Corylus avellana HOM05D001035 ORTHO05D001045 1.1e-11 73.6 64 60.9
Nitab4.5_0003981g0010 Nicotiana tabacum HOM05D001035 ORTHO05D001045 1.4e-11 73.2 66 51.5
FAN05G4747 Fragaria x ananassa HOM05D001035 ORTHO05D001045 1.8e-11 72.8 64 59.4
MBI13_g01671_MAGBIO Magnolia biondii HOM05D001035 ORTHO05D001045 2.4e-11 72.4 65 55.4
Manes.04G149500 Manihot esculenta HOM05D001035 ORTHO05D001045 3.1e-11 72.0 65 55.4
CiPaw.01G213600 Carya illinoinensis HOM05D001035 ORTHO05D001045 5.3e-11 71.2 60 58.3
Manes.03G044800 Manihot esculenta HOM05D001035 ORTHO05D001045 5.3e-11 71.2 66 56.1
Manes.11G014300 Manihot esculenta HOM05D001035 ORTHO05D001045 5.3e-11 71.2 62 58.1
GSVIVG01015013001 Vitis vinifera HOM05D001035 ORTHO05D001045 5.3e-11 71.2 101 40.6
GSVIVG01016693001 Vitis vinifera HOM05D001035 ORTHO05D001045 5.3e-11 71.2 66 60.6
Lj9A536G72 Lonicera japonica HOM05D001035 ORTHO05D001045 6.9e-11 70.9 62 59.7
SGA_v2.0_scaffold71G23906 Striga asiatica HOM05D001035 ORTHO05D001045 6.9e-11 70.9 66 56.1
RcHm_v2.0_Chr2g0147031 Rosa chinensis HOM05D001035 ORTHO05D001045 9.0e-11 70.5 65 60.0
Oeu006744.1 Olea europaea HOM05D001035 ORTHO05D001045 1.2e-10 70.1 75 48.0
QL05p001890 Quercus lobata HOM05D001035 ORTHO05D001045 1.2e-10 70.1 67 58.2
Cpa.g.sc25.178 Carica papaya HOM05D001035 ORTHO05D001045 2.0e-10 69.3 83 45.8
Gohir.D06G079300 Gossypium hirsutum HOM05D001035 ORTHO05D001045 2.0e-10 69.3 65 56.9
Gorai.010G092400 Gossypium raimondii HOM05D001035 ORTHO05D001045 2.0e-10 69.3 65 56.9
Duzib150G1380 Durio zibethinus HOM05D001035 ORTHO05D001045 2.6e-10 68.9 66 54.5
MD09G1175500 Malus domestica HOM05D001035 ORTHO05D001045 2.6e-10 68.9 66 57.6
Thecc.09G070200 Theobroma cacao HOM05D001035 ORTHO05D001045 2.6e-10 68.9 65 52.3
Ciclev10024924m.g Citrus clementina HOM05D001035 ORTHO05D001045 3.4e-10 68.6 66 57.6
Sc12g0010840 Simmondsia chinensis HOM05D001035 ORTHO05D001045 4.5e-10 68.2 76 50.0
TWI59G1345 Tripterygium wilfordii HOM05D001035 ORTHO05D001045 5.8e-10 67.8 101 45.5
Gohir.A06G079700 Gossypium hirsutum HOM05D001035 ORTHO05D001045 7.6e-10 67.4 65 55.4
Potri.003G071300 Populus trichocarpa HOM05D001035 ORTHO05D001045 1.0e-09 67.0 62 51.6
Atru.chr7.1768 Acer truncatum HOM05D001035 ORTHO05D001045 1.7e-09 66.2 66 57.6
Aqoxy7G00976 Aquilegia oxysepala HOM05D001035 ORTHO05D001045 1.7e-09 66.2 65 53.8
FAN02G1713 Fragaria x ananassa HOM05D001035 ORTHO05D001045 1.7e-09 66.2 71 54.9
CiPaw.02G132500 Carya illinoinensis HOM05D001035 ORTHO05D001045 2.2e-09 65.9 67 52.2
Dinv25505 Davidia involucrata HOM05D001035 ORTHO05D001045 2.2e-09 65.9 101 40.6
FvH4_6g35480 Fragaria vesca HOM05D001035 ORTHO05D001045 2.9e-09 65.5 71 54.9
FAN14G3685 Fragaria x ananassa HOM05D001035 ORTHO05D001045 2.9e-09 65.5 71 54.9
Hund18652 Selenicereus undatus HOM05D001035 ORTHO05D001045 2.9e-09 65.5 65 50.8
CiPaw.03G200300 Carya illinoinensis HOM05D001035 ORTHO05D001045 3.8e-09 65.1 70 52.9
FAN09G2420 Fragaria x ananassa HOM05D001035 ORTHO05D001045 3.8e-09 65.1 71 53.5
Nitab4.5_0010313g0010 Nicotiana tabacum HOM05D001035 ORTHO05D001045 3.8e-09 65.1 66 50.0
Peaxi162Scf00038g02246 Petunia axillaris HOM05D001035 ORTHO05D001045 3.8e-09 65.1 68 48.5
QL11p002968 Quercus lobata HOM05D001035 ORTHO05D001045 3.8e-09 65.1 94 40.4
Sabra03G0042100 Salix brachista HOM05D001035 ORTHO05D001045 3.8e-09 65.1 66 51.5
Gohir.D07G017000 Gossypium hirsutum HOM05D001035 ORTHO05D001045 4.9e-09 64.7 62 54.8
Gorai.001G017800 Gossypium raimondii HOM05D001035 ORTHO05D001045 4.9e-09 64.7 62 54.8
Sc15g0000700 Simmondsia chinensis HOM05D001035 ORTHO05D001045 6.5e-09 64.3 65 58.5
Ciclev10007455m.g Citrus clementina HOM05D001035 ORTHO05D001045 8.4e-09 63.9 66 50.0
Duzib168G2015 Durio zibethinus HOM05D001035 ORTHO05D001045 8.4e-09 63.9 62 54.8
Gohir.A07G017200 Gossypium hirsutum HOM05D001035 ORTHO05D001045 8.4e-09 63.9 62 54.8
Gohir.A13G189000 Gossypium hirsutum HOM05D001035 ORTHO05D001045 1.1e-08 63.5 65 52.3
Manes.16G090400 Manihot esculenta HOM05D001035 ORTHO05D001045 1.1e-08 63.5 65 52.3
SGA_v2.0_scaffold122G33314 Striga asiatica HOM05D001035 ORTHO05D001045 1.1e-08 63.5 86 45.3
RcHm_v2.0_Chr2g0095951 Rosa chinensis HOM05D001035 ORTHO05D001045 1.4e-08 63.2 62 56.5
Thecc.06G127600 Theobroma cacao HOM05D001035 ORTHO05D001045 1.4e-08 63.2 65 55.4
TWI34G0853 Tripterygium wilfordii HOM05D001035 ORTHO05D001045 1.4e-08 63.2 85 43.5
CAN.G1318.3 Capsicum annuum HOM05D001035 ORTHO05D001045 1.9e-08 62.8 71 43.7
CiPaw.04G140300 Carya illinoinensis HOM05D001035 ORTHO05D001045 1.9e-08 62.8 66 51.5
Eucgr.I02139 Eucalyptus grandis HOM05D001035 ORTHO05D001045 1.9e-08 62.8 93 43.0
Potri.018G063700 Populus trichocarpa HOM05D001035 ORTHO05D001045 1.9e-08 62.8 66 48.5
PGSC0003DMG400028855 Solanum tuberosum HOM05D001035 ORTHO05D001045 1.9e-08 62.8 65 47.7
TWI32G0492 Tripterygium wilfordii HOM05D001035 ORTHO05D001045 1.9e-08 62.8 66 48.5
Potri.001G163900 Populus trichocarpa HOM05D001035 ORTHO05D001045 2.5e-08 62.4 62 48.4
Gohir.D13G196000 Gossypium hirsutum HOM05D001035 ORTHO05D001045 3.2e-08 62.0 65 50.8
Gorai.013G222100 Gossypium raimondii HOM05D001035 ORTHO05D001045 3.2e-08 62.0 65 50.8
Sabra18G0056900 Salix brachista HOM05D001035 ORTHO05D001045 3.2e-08 62.0 66 48.5
Haze_26070 Corylus avellana HOM05D001035 ORTHO05D001045 4.2e-08 61.6 65 53.8
MD17G1151300 Malus domestica HOM05D001035 ORTHO05D001045 4.2e-08 61.6 85 38.8
CDE11G0831 Ceratophyllum demersum HOM05D001035 ORTHO05D001045 5.5e-08 61.2 62 46.8
Manes.11G014501 Manihot esculenta HOM05D001035 ORTHO05D001045 7.1e-08 60.8 58 53.4
CDE05G3213 Ceratophyllum demersum HOM05D001035 ORTHO05D001045 9.3e-08 60.5 62 46.8
Solyc12g049540.3 Solanum lycopersicum HOM05D001035 ORTHO05D001045 9.3e-08 60.5 64 48.4
CSS0026011 Camellia sinensis var. sinensis HOM05D001035 ORTHO05D001045 1.2e-07 60.1 65 52.3
MSTRG.22526 Avicennia marina HOM05D001035 ORTHO05D001045 1.6e-07 59.7 66 51.5
Duzib235G0292 Durio zibethinus HOM05D001035 ORTHO05D001045 1.6e-07 59.7 62 51.6
Potri.006G136400 Populus trichocarpa HOM05D001035 ORTHO05D001045 1.6e-07 59.7 66 48.5
Actinidia39616 Actinidia chinensis HOM05D001035 ORTHO05D001045 2.1e-07 59.3 69 47.8
Cc04_g00880 Coffea canephora HOM05D001035 ORTHO05D001045 2.1e-07 59.3 86 44.2
Eucgr.J02604 Eucalyptus grandis HOM05D001035 ORTHO05D001045 2.1e-07 59.3 66 54.5
FAN26G1913 Fragaria x ananassa HOM05D001035 ORTHO05D001045 2.1e-07 59.3 62 56.5
Prupe.7G192000 Prunus persica HOM05D001035 ORTHO05D001045 2.1e-07 59.3 70 45.7
Sopen12g024010 Solanum pennellii HOM05D001035 ORTHO05D001045 2.1e-07 59.3 64 46.9
Duzib160G0796 Durio zibethinus HOM05D001035 ORTHO05D001045 4.6e-07 58.2 64 53.1
FvH4_1g09400 Fragaria vesca HOM05D001035 ORTHO05D001045 4.6e-07 58.2 62 54.8
FAN19G0042 Fragaria x ananassa HOM05D001035 ORTHO05D001045 4.6e-07 58.2 62 54.8
Glyma.13G114600 Glycine max HOM05D001035 ORTHO05D001045 4.6e-07 58.2 67 47.8
PSO104G0139 Papaver somniferum HOM05D001035 ORTHO05D001045 4.6e-07 58.2 66 50.0
FAN23G2583 Fragaria x ananassa HOM05D001035 ORTHO05D001045 6.0e-07 57.8 61 55.7
FAN28G1935 Fragaria x ananassa HOM05D001035 ORTHO05D001045 6.0e-07 57.8 61 55.7
Lalb_Chr07g0181421 Lupinus albus HOM05D001035 ORTHO05D001045 6.0e-07 57.8 66 47.0
Lalb_Chr12g0200351 Lupinus albus HOM05D001035 ORTHO05D001045 6.0e-07 57.8 66 47.0
EL10Ac7g16464 Beta vulgaris HOM05D001035 ORTHO05D001045 7.9e-07 57.4 61 47.5
COL.COLO4_30835 Corchorus olitorius HOM05D001035 ORTHO05D001045 7.9e-07 57.4 62 50.0
FAN26G1728 Fragaria x ananassa HOM05D001035 ORTHO05D001045 7.9e-07 57.4 62 54.8
Lj4g0012203 Lotus japonicus HOM05D001035 ORTHO05D001045 7.9e-07 57.4 66 43.9
Glyma.17G045400 Glycine max HOM05D001035 ORTHO05D001045 1.0e-06 57.0 67 46.3
Lsat_1_v5_gn_1_38501 Lactuca sativa HOM05D001035 ORTHO05D001045 1.0e-06 57.0 67 49.3
MD15G1223800 Malus domestica HOM05D001035 ORTHO05D001045 1.0e-06 57.0 66 48.5
Phvul.003G127200 Phaseolus vulgaris HOM05D001035 ORTHO05D001045 1.0e-06 57.0 66 45.5
Gohir.A05G137700 Gossypium hirsutum HOM05D001035 ORTHO05D001045 1.3e-06 56.6 64 53.1
Gohir.D05G139800 Gossypium hirsutum HOM05D001035 ORTHO05D001045 1.3e-06 56.6 64 53.1
Gorai.009G144100 Gossypium raimondii HOM05D001035 ORTHO05D001045 1.3e-06 56.6 64 53.1
Nitab4.5_0001147g0080 Nicotiana tabacum HOM05D001035 ORTHO05D001045 1.3e-06 56.6 65 49.2
CANSAT56G2505 Cannabis sativa HOM05D001035 ORTHO05D001045 1.8e-06 56.2 66 48.5
ECA247G1913 Erigeron canadensis HOM05D001035 ORTHO05D001045 1.8e-06 56.2 67 44.8
arahy.Tifrunner.gnm1.ann1.0L0BEE Arachis hypogaea HOM05D001035 ORTHO05D001045 2.3e-06 55.8 66 40.9
arahy.Tifrunner.gnm1.ann1.FZUB0X Arachis hypogaea HOM05D001035 ORTHO05D001045 2.3e-06 55.8 66 40.9
Eucgr.C03195 Eucalyptus grandis HOM05D001035 ORTHO05D001045 3.0e-06 55.5 66 42.4
Rhsim05G0002000 Rhododendron simsii HOM05D001035 ORTHO05D001045 3.0e-06 55.5 66 47.0
MD02G1102300 Malus domestica HOM05D001035 ORTHO05D001045 3.9e-06 55.1 66 45.5
VMungo1215G1452 Vigna mungo HOM05D001035 ORTHO05D001045 3.9e-06 55.1 66 43.9
MELO3C024320.2 Cucumis melo HOM05D001035 ORTHO05D001045 5.1e-06 54.7 72 41.7
Dinv42433 Davidia involucrata HOM05D001035 ORTHO05D001045 5.1e-06 54.7 66 47.0
SHI28042 Sapria himalayana HOM05D001035 ORTHO05D001045 5.1e-06 54.7 63 49.2
Sopen07g006130 Solanum pennellii HOM05D001035 ORTHO05D001045 5.1e-06 54.7 65 47.7
Atru.chr1.4127 Acer truncatum HOM05D001035 ORTHO05D001045 6.7e-06 54.3 67 47.8
THA.LOC104822626 Tarenaya hassleriana HOM05D001035 ORTHO05D001045 6.7e-06 54.3 61 52.5
CAN.G228.5 Capsicum annuum HOM05D001035 ORTHO05D001045 8.7e-06 53.9 63 46.0
MELO3C022895.2 Cucumis melo HOM05D001035 ORTHO05D001045 8.7e-06 53.9 66 47.0
HanXRQChr04g0094271 Helianthus annuus HOM05D001035 ORTHO05D001045 8.7e-06 53.9 65 44.6
Solyc07g017430.3 Solanum lycopersicum HOM05D001035 ORTHO05D001045 8.7e-06 53.9 65 44.6


User provided reference genes

Program Settings