Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037598 Camellia sinensis var. sinensis HOM05D000522 ORTHO05D019821 6.3e-30 133.3 60 100.0
CSS0027678 Camellia sinensis var. sinensis HOM05D000522 ORTHO05D019821 1.8e-29 131.7 60 98.3
Rhsim01G0136100 Rhododendron simsii HOM05D000522 ORTHO05D000565 1.2e-12 75.9 40 90.0
Potri.014G057400 Populus trichocarpa HOM05D000522 ORTHO05D000565 2.1e-12 75.1 40 85.0
Sabra14G0041700 Salix brachista HOM05D000522 ORTHO05D000565 2.1e-12 75.1 40 85.0
vmacro21043 Vaccinium macrocarpon HOM05D000522 ORTHO05D000565 3.5e-12 74.3 40 87.5
Dinv44102 Davidia involucrata HOM05D000522 ORTHO05D000565 7.8e-12 73.2 40 87.5
Lsat_1_v5_gn_3_129500 Lactuca sativa HOM05D000522 ORTHO05D000565 1.0e-11 72.8 40 80.0
Lj7C540G8 Lonicera japonica HOM05D000522 ORTHO05D000565 1.0e-11 72.8 40 82.5
Nn1g00957 Nelumbo nucifera HOM05D000522 ORTHO05D000565 2.3e-11 71.6 40 82.5
Actinidia33489 Actinidia chinensis HOM05D000522 ORTHO05D000565 3.0e-11 71.2 39 82.1
Duzib133G0148 Durio zibethinus HOM05D000522 ORTHO05D000565 3.9e-11 70.9 40 80.0
Cpa.g.sc218.2 Carica papaya HOM05D000522 ORTHO05D000565 5.1e-11 70.5 40 82.5
MD07G1111300 Malus domestica HOM05D000522 ORTHO05D000565 6.6e-11 70.1 39 79.5
GSVIVG01018212001 Vitis vinifera HOM05D000522 ORTHO05D000565 6.6e-11 70.1 40 77.5
Atru.chr5.205 Acer truncatum HOM05D000522 ORTHO05D000565 8.6e-11 69.7 40 80.0
Manes.05G051200 Manihot esculenta HOM05D000522 ORTHO05D000565 8.6e-11 69.7 40 77.5
QL04p035366 Quercus lobata HOM05D000522 ORTHO05D000565 8.6e-11 69.7 39 79.5
MSTRG.20713 Avicennia marina HOM05D000522 ORTHO05D000565 1.1e-10 69.3 40 77.5
ClCG03G012360 Citrullus lanatus HOM05D000522 ORTHO05D000565 1.5e-10 68.9 38 78.9
Prupe.2G134700 Prunus persica HOM05D000522 ORTHO05D000565 1.5e-10 68.9 40 77.5
Cfa011127 Carpinus fangiana HOM05D000522 ORTHO05D000565 1.9e-10 68.6 40 77.5
Haze_02736 Corylus avellana HOM05D000522 ORTHO05D000565 1.9e-10 68.6 40 77.5
EL10Ac1g00813 Beta vulgaris HOM05D000522 ORTHO05D000565 2.5e-10 68.2 40 75.0
COL.COLO4_12455 Corchorus olitorius HOM05D000522 ORTHO05D000565 2.5e-10 68.2 40 75.0
Gohir.A11G077600 Gossypium hirsutum HOM05D000522 ORTHO05D000565 2.5e-10 68.2 40 77.5
Gohir.D11G082000 Gossypium hirsutum HOM05D000522 ORTHO05D000565 2.5e-10 68.2 40 77.5
Gorai.007G087700 Gossypium raimondii HOM05D000522 ORTHO05D000565 2.5e-10 68.2 40 77.5
Hund27389 Selenicereus undatus HOM05D000522 ORTHO05D000565 2.5e-10 68.2 40 77.5
Ca_23121_v3 Cicer arietinum L. HOM05D001289 ORTHO05D000565 3.3e-10 67.8 38 78.9
Phvul.010G055600 Phaseolus vulgaris HOM05D000522 ORTHO05D000565 3.3e-10 67.8 38 78.9
Migut.B01570 Erythranthe guttata HOM05D000522 ORTHO05D000565 4.3e-10 67.4 38 76.3
ECA240G3298 Erigeron canadensis HOM05D000522 ORTHO05D000565 5.6e-10 67.0 39 71.8
Lj3g0004977 Lotus japonicus HOM05D000522 ORTHO05D000565 5.6e-10 67.0 38 78.9
AUR62004144 Chenopodium quinoa HOM05D000522 ORTHO05D000565 7.3e-10 66.6 38 76.3
Medtr8g005990 Medicago truncatula HOM05D000522 ORTHO05D000565 7.3e-10 66.6 38 76.3
Sc26g0001370 Simmondsia chinensis HOM05D006089 ORTHO05D007345 7.3e-10 66.6 40 72.5
Thecc.01G387000 Theobroma cacao HOM05D000522 ORTHO05D000565 7.3e-10 66.6 51 60.8
TPR.G27272 Trifolium pratense HOM05D000522 ORTHO05D000565 7.3e-10 66.6 38 76.3
TPR.G29078 Trifolium pratense HOM05D000522 ORTHO05D019821 7.3e-10 66.6 38 76.3
TAR629G0620 Trochodendron aralioides HOM05D000522 ORTHO05D000565 7.3e-10 66.6 40 77.5
Ah.15g095060 Amaranthus hybridus HOM05D000522 ORTHO05D000565 9.5e-10 66.2 40 72.5
CsaV3_1G043650 Cucumis sativus L. HOM05D000522 ORTHO05D000565 9.5e-10 66.2 38 76.3
Lalb_Chr13g0290401 Lupinus albus HOM05D000522 ORTHO05D000565 9.5e-10 66.2 38 78.9
VMungo0331G0208 Vigna mungo HOM05D000522 ORTHO05D000565 9.5e-10 66.2 38 76.3
Eucgr.E01595 Eucalyptus grandis HOM05D000522 ORTHO05D000565 1.2e-09 65.9 40 72.5
HanXRQChr13g0422801 Helianthus annuus HOM05D000522 ORTHO05D000565 1.2e-09 65.9 40 72.5
PGR042G1609 Punica granatum HOM05D000522 ORTHO05D000565 1.2e-09 65.9 38 76.3
RcHm_v2.0_Chr1g0348451 Rosa chinensis HOM05D000522 ORTHO05D000565 1.2e-09 65.9 38 73.7
Ciclev10020245m.g Citrus clementina HOM05D000522 ORTHO05D000565 1.6e-09 65.5 40 77.5
MELO3C015086.2 Cucumis melo HOM05D000522 ORTHO05D000565 1.6e-09 65.5 38 76.3
Nitab4.5_0002067g0050 Nicotiana tabacum HOM05D000522 ORTHO05D000565 1.6e-09 65.5 40 70.0
Peaxi162Scf00377g00719 Petunia axillaris HOM05D000522 ORTHO05D000565 1.6e-09 65.5 40 70.0
TWI59G0792 Tripterygium wilfordii HOM05D000522 ORTHO05D000565 1.6e-09 65.5 40 75.0
ATR0001G034 Amborella trichopoda HOM05D000522 ORTHO05D000565 2.1e-09 65.1 40 75.0
MBI04_g37585_MAGBIO Magnolia biondii HOM05D000522 ORTHO05D000565 2.1e-09 65.1 38 73.7
CiPaw.14G024000 Carya illinoinensis HOM05D000522 ORTHO05D000565 2.8e-09 64.7 40 75.0
Oeu063214.1 Olea europaea HOM05D000522 ORTHO05D000565 2.8e-09 64.7 40 70.0
SGA_v2.0_scaffold153G36947 Striga asiatica HOM05D000522 ORTHO05D000565 2.8e-09 64.7 40 72.5
AUR62013705 Chenopodium quinoa HOM05D000522 ORTHO05D000565 3.6e-09 64.3 38 71.1
PGSC0003DMG400016674 Solanum tuberosum HOM05D000522 ORTHO05D000565 3.6e-09 64.3 38 68.4
arahy.Tifrunner.gnm1.ann1.94BWWR Arachis hypogaea HOM05D000522 ORTHO05D000565 4.7e-09 63.9 38 76.3
arahy.Tifrunner.gnm1.ann1.ABUQ6J Arachis hypogaea HOM05D000522 ORTHO05D000565 4.7e-09 63.9 38 76.3
Cc02_g24510 Coffea canephora HOM05D000522 ORTHO05D000565 6.2e-09 63.5 38 71.1
Glyma.03G117300 Glycine max HOM05D000522 ORTHO05D000565 6.2e-09 63.5 38 73.7
Sed0013979 Sechium edule HOM05D000522 ORTHO05D000565 6.2e-09 63.5 38 71.1
CANSAT21G0552 Cannabis sativa HOM05D000522 ORTHO05D000565 1.1e-08 62.8 40 72.5
ECA240G1653 Erigeron canadensis HOM05D000522 ORTHO05D000565 1.1e-08 62.8 40 70.0
Peaxi162Scf00001g00565 Petunia axillaris HOM05D000522 ORTHO05D000565 1.1e-08 62.8 37 70.3
Peaxi162Scf00001g05617 Petunia axillaris HOM05D000522 ORTHO05D000565 1.1e-08 62.8 53 52.8
QL04p035476 Quercus lobata HOM05D000522 ORTHO05D000565 1.1e-08 62.8 39 71.8
SalBow5G1143 Salvia bowleyana HOM05D000522 ORTHO05D000565 1.1e-08 62.8 38 71.1
CAN.G899.23 Capsicum annuum HOM05D000522 ORTHO05D000565 1.4e-08 62.4 40 70.0
PSO063G7054 Papaver somniferum HOM05D000522 ORTHO05D000565 1.4e-08 62.4 40 72.5
Sopen01g036430 Solanum pennellii HOM05D000522 ORTHO05D000565 1.4e-08 62.4 40 70.0
BcaB02g07412 Brassica carinata HOM05D000522 ORTHO05D000565 1.8e-08 62.0 37 70.3
FAN01G0593 Fragaria x ananassa HOM05D000522 ORTHO05D000565 1.8e-08 62.0 38 71.1
FAN06G1558 Fragaria x ananassa HOM05D000522 ORTHO05D000565 1.8e-08 62.0 38 71.1
FAN06G3642 Fragaria x ananassa HOM05D000522 ORTHO05D000565 1.8e-08 62.0 38 71.1
FAN10G0114 Fragaria x ananassa HOM05D000522 ORTHO05D000565 1.8e-08 62.0 38 71.1
RcHm_v2.0_Chr6g0299431 Rosa chinensis HOM05D000522 ORTHO05D000565 1.8e-08 62.0 38 71.1
Nitab4.5_0001823g0070 Nicotiana tabacum HOM05D000522 ORTHO05D000565 2.3e-08 61.6 40 67.5
Nitab4.5_0003110g0030 Nicotiana tabacum HOM05D000522 ORTHO05D000565 2.3e-08 61.6 40 67.5
Potri.018G018800 Populus trichocarpa HOM05D000522 ORTHO05D000565 2.3e-08 61.6 38 68.4
Sabra18G0021500 Salix brachista HOM05D000522 ORTHO05D000565 3.1e-08 61.2 38 68.4
Thhalv10006020m.g Eutrema salsugineum HOM05D000522 ORTHO05D000565 5.2e-08 60.5 37 70.3
Prupe.1G393600 Prunus persica HOM05D000522 ORTHO05D000565 5.2e-08 60.5 38 68.4
PSO782G2515 Papaver somniferum HOM05D000522 ORTHO05D000565 6.8e-08 60.1 40 70.0
Sp5g02710 Schrenkiella parvula HOM05D000522 ORTHO05D000565 6.8e-08 60.1 37 70.3
GSVIVG01004719001 Vitis vinifera HOM05D000522 ORTHO05D000565 6.8e-08 60.1 38 71.1
A07p25120 Brassica napus HOM05D000522 ORTHO05D000565 8.9e-08 59.7 37 64.9
BraA07t30154Z Brassica rapa HOM05D000522 ORTHO05D000565 8.9e-08 59.7 37 64.9
DCAR_031874 Daucus carota HOM05D000522 ORTHO05D000565 8.9e-08 59.7 38 65.8
Nitab4.5_0000294g0020 Nicotiana tabacum HOM05D000522 ORTHO05D000565 8.9e-08 59.7 37 67.6
unitig_750.g28397 Utricularia gibba HOM05D000522 ORTHO05D000565 8.9e-08 59.7 40 65.0
AL5G42810 Arabidopsis lyrata HOM05D000522 ORTHO05D000565 1.2e-07 59.3 37 67.6
CAN.G899.20 Capsicum annuum HOM05D000522 ORTHO05D000565 1.2e-07 59.3 40 67.5
FAN03G0864 Fragaria x ananassa HOM05D000522 ORTHO05D000565 1.2e-07 59.3 37 70.3
FAN10G3502 Fragaria x ananassa HOM05D000522 ORTHO05D000565 1.2e-07 59.3 37 70.3
MD08G1057200 Malus domestica HOM05D000522 ORTHO05D000565 1.2e-07 59.3 38 68.4
Carub.0005s2725 Capsella rubella HOM05D000522 ORTHO05D000565 2.0e-07 58.5 37 67.6
Os10g0552900 Oryza sativa ssp. japonica HOM05D000522 ORTHO05D000565 2.6e-07 58.2 40 65.0
Zm00001eb023080 Zea mays HOM05D000522 ORTHO05D000565 2.6e-07 58.2 40 62.5
Aa31LG10G14770 Aethionema arabicum HOM05D000522 ORTHO05D000565 3.4e-07 57.8 37 64.9
Sc09g0010630 Simmondsia chinensis HOM05D000522 ORTHO05D000565 4.4e-07 57.4 36 69.4
unitig_37.g12916 Utricularia gibba HOM05D000522 ORTHO05D000565 4.4e-07 57.4 36 66.7
Aqoxy5G03853 Aquilegia oxysepala HOM05D000522 ORTHO05D000565 5.8e-07 57.0 38 65.8
CARHR170910 Cardamine hirsuta HOM05D000522 ORTHO05D000565 5.8e-07 57.0 37 64.9
Duzib168G2113 Durio zibethinus HOM05D000522 ORTHO05D000565 5.8e-07 57.0 38 63.2
Oeu030219.1 Olea europaea HOM05D000522 ORTHO05D000565 5.8e-07 57.0 36 66.7
CDE05G3610 Ceratophyllum demersum HOM05D000522 ORTHO05D000565 7.6e-07 56.6 38 65.8
DCAR_031875 Daucus carota HOM05D000522 ORTHO05D000565 7.6e-07 56.6 39 66.7
Manes.16G129600 Manihot esculenta HOM05D000522 ORTHO05D000565 7.6e-07 56.6 38 65.8
PSO017G6765 Papaver somniferum HOM05D000522 ORTHO05D000565 7.6e-07 56.6 38 60.5
SGA_v2.0_scaffold43G16519 Striga asiatica HOM05D002872 ORTHO05D003204 7.6e-07 56.6 39 66.7
TAR626G1465 Trochodendron aralioides HOM05D000522 ORTHO05D000565 7.6e-07 56.6 36 69.4
AT3G60510 Arabidopsis thaliana HOM05D000522 ORTHO05D000565 9.9e-07 56.2 37 62.2
arahy.Tifrunner.gnm1.ann1.3ZW7IP Arachis hypogaea HOM05D000522 ORTHO05D019821 9.9e-07 56.2 33 75.8
BcaC08g45069 Brassica carinata HOM05D000522 ORTHO05D000565 9.9e-07 56.2 37 64.9
C06p26780 Brassica napus HOM05D000522 ORTHO05D000565 9.9e-07 56.2 37 64.9
BolC6t37853H Brassica oleracea HOM05D000522 ORTHO05D000565 9.9e-07 56.2 37 64.9
COL.COLO4_18948 Corchorus olitorius HOM05D000522 ORTHO05D000565 9.9e-07 56.2 38 60.5
SalBow5G4631 Salvia bowleyana HOM05D000522 ORTHO05D000565 9.9e-07 56.2 37 67.6
Sed0006595 Sechium edule HOM05D000522 ORTHO05D019821 9.9e-07 56.2 38 65.8
PSO170G3796 Papaver somniferum HOM05D000522 ORTHO05D000565 1.3e-06 55.8 38 57.9
EL10Ac2g04108 Beta vulgaris HOM05D000522 ORTHO05D000565 1.7e-06 55.5 36 66.7
CiPaw.07G230100 Carya illinoinensis HOM05D000522 ORTHO05D000565 1.7e-06 55.5 38 65.8
AUR62023043 Chenopodium quinoa HOM05D000522 ORTHO05D000565 1.7e-06 55.5 36 66.7
MD15G1040200 Malus domestica HOM05D000522 ORTHO05D019821 1.7e-06 55.5 38 65.8
THA.LOC104802480 Tarenaya hassleriana HOM05D000522 ORTHO05D000565 1.7e-06 55.5 37 67.6
TPR.G38835 Trifolium pratense HOM05D000522 ORTHO05D000565 1.7e-06 55.5 38 60.5
Ciclev10008491m.g Citrus clementina HOM05D000522 ORTHO05D000565 2.2e-06 55.1 38 60.5
FAN15G2593 Fragaria x ananassa HOM05D000522 ORTHO05D000565 2.2e-06 55.1 38 60.5
FAN27G1283 Fragaria x ananassa HOM05D000522 ORTHO05D000565 2.2e-06 55.1 38 60.5
Nn8g39895 Nelumbo nucifera HOM05D000522 ORTHO05D000565 2.2e-06 55.1 38 65.8
SEGI_16823 Sequoiadendron giganteum HOM05D000522 ORTHO05D000565 2.2e-06 55.1 38 63.2
AUR62009362 Chenopodium quinoa HOM05D000522 ORTHO05D000565 2.9e-06 54.7 36 66.7
FAN20G1971 Fragaria x ananassa HOM05D000522 ORTHO05D000565 2.9e-06 54.7 39 59.0
TWI32G0930 Tripterygium wilfordii HOM05D000522 ORTHO05D000565 2.9e-06 54.7 38 57.9
Gohir.A07G032800 Gossypium hirsutum HOM05D000522 ORTHO05D000565 3.7e-06 54.3 38 57.9
Gohir.D07G036100 Gossypium hirsutum HOM05D000522 ORTHO05D000565 3.7e-06 54.3 38 57.9
Gorai.001G038000 Gossypium raimondii HOM05D000522 ORTHO05D000565 3.7e-06 54.3 38 57.9
Thecc.09G015900 Theobroma cacao HOM05D000522 ORTHO05D000565 3.7e-06 54.3 38 63.2
TWI81G0633 Tripterygium wilfordii HOM05D000522 ORTHO05D000565 3.7e-06 54.3 38 63.2
Cpa.g.sc127.34 Carica papaya HOM05D000522 ORTHO05D000565 4.9e-06 53.9 38 63.2
FvH4_2g41110 Fragaria vesca HOM05D000522 ORTHO05D000565 6.4e-06 53.5 38 57.9
Actinidia10521 Actinidia chinensis HOM05D000522 ORTHO05D000565 8.4e-06 53.1 36 61.1
ClCG05G016290 Citrullus lanatus HOM05D000522 ORTHO05D000565 8.4e-06 53.1 38 65.8
Dinv11659 Davidia involucrata HOM05D000522 ORTHO05D019821 8.4e-06 53.1 36 61.1
Psat6g026880 Pisum sativum HOM05D000522 ORTHO05D000565 8.4e-06 53.1 38 57.9


User provided reference genes

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