Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037597 Camellia sinensis var. sinensis HOM05D000764 ORTHO05D004953 0.0e+00 3931.7 1985 100.0
Dinv33723 Davidia involucrata HOM05D000764 ORTHO05D004953 0.0e+00 3225.6 2015 81.7
Cfa009565 Carpinus fangiana HOM05D000764 ORTHO05D004953 0.0e+00 2971.8 1985 76.1
QL01p009034 Quercus lobata HOM05D000764 ORTHO05D004953 0.0e+00 2961.4 2012 75.4
CiPaw.13G176800 Carya illinoinensis HOM05D000764 ORTHO05D004953 0.0e+00 2923.7 1989 75.0
Rhsim03G0149100 Rhododendron simsii HOM05D000764 ORTHO05D004953 0.0e+00 2898.2 2018 76.0
Haze_22943 Corylus avellana HOM05D000764 ORTHO05D004953 0.0e+00 2857.0 2114 70.7
Atru.chr3.2095 Acer truncatum HOM05D000764 ORTHO05D004953 0.0e+00 2836.6 2034 72.1
Manes.14G121800 Manihot esculenta HOM05D000764 ORTHO05D004953 0.0e+00 2832.7 1989 73.7
Ciclev10014014m.g Citrus clementina HOM05D000764 ORTHO05D004953 0.0e+00 2796.5 1991 72.3
TWI32G0740 Tripterygium wilfordii HOM05D000764 ORTHO05D004953 0.0e+00 2795.4 1998 72.3
Duzib128G0342 Durio zibethinus HOM05D000764 ORTHO05D004953 0.0e+00 2768.0 1990 71.6
TWI60G0851 Tripterygium wilfordii HOM05D000764 ORTHO05D004953 0.0e+00 2753.8 2003 71.2
Potri.001G004200 Populus trichocarpa HOM05D000764 ORTHO05D004953 0.0e+00 2740.3 1990 71.8
Potri.003G220800 Populus trichocarpa HOM05D000764 ORTHO05D004953 0.0e+00 2716.0 1990 70.8
GSVIVG01025465001 Vitis vinifera HOM05D000764 ORTHO05D004953 0.0e+00 2707.6 1841 75.2
Dinv06519 Davidia involucrata HOM05D000764 ORTHO05D004953 0.0e+00 2704.5 1669 82.0
RcHm_v2.0_Chr5g0083741 Rosa chinensis HOM05D000764 ORTHO05D004953 0.0e+00 2697.9 1988 71.0
CANSAT11G1226 Cannabis sativa HOM05D000764 ORTHO05D004953 0.0e+00 2694.8 1991 70.6
Prupe.6G003600 Prunus persica HOM05D000764 ORTHO05D004953 0.0e+00 2692.1 1992 70.9
MD03G1004100 Malus domestica HOM05D000764 ORTHO05D004953 0.0e+00 2684.8 1992 70.2
Phvul.001G269300 Phaseolus vulgaris HOM05D000764 ORTHO05D004953 0.0e+00 2673.7 1991 69.6
Glyma.18G000100 Glycine max HOM05D000764 ORTHO05D004953 0.0e+00 2670.2 1990 69.5
FvH4_3g45550 Fragaria vesca HOM05D000764 ORTHO05D004953 0.0e+00 2665.2 1989 70.4
arahy.Tifrunner.gnm1.ann1.ML2TY5 Arachis hypogaea HOM05D000764 ORTHO05D004953 0.0e+00 2660.2 1987 69.7
Cc01_g00030 Coffea canephora HOM05D000764 ORTHO05D004953 0.0e+00 2658.6 2003 69.5
arahy.Tifrunner.gnm1.ann1.W7TQKX Arachis hypogaea HOM05D000764 ORTHO05D004953 0.0e+00 2654.4 1987 69.5
FAN11G0762 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2650.9 2006 69.8
Lj6g0018726 Lotus japonicus HOM05D000764 ORTHO05D004953 0.0e+00 2650.9 1986 69.4
Gohir.A08G227900 Gossypium hirsutum HOM05D000764 ORTHO05D004953 0.0e+00 2632.1 1984 69.5
CAN.G1237.43 Capsicum annuum HOM05D000764 ORTHO05D004953 0.0e+00 2630.1 1996 69.1
Gorai.004G264800 Gossypium raimondii HOM05D000764 ORTHO05D004953 0.0e+00 2624.0 1987 69.0
PGR119G0322 Punica granatum HOM05D000764 ORTHO05D004953 0.0e+00 2617.0 2002 68.1
Sopen04g010120 Solanum pennellii HOM05D000764 ORTHO05D004953 0.0e+00 2612.8 1995 68.9
Sabra01G0002900 Salix brachista HOM05D000764 ORTHO05D004953 0.0e+00 2608.6 2057 67.5
Gohir.D08G248200 Gossypium hirsutum HOM05D000764 ORTHO05D004953 0.0e+00 2608.2 1999 68.5
CsaV3_1G041680 Cucumis sativus L. HOM05D000764 ORTHO05D004953 0.0e+00 2605.5 1991 68.6
Glyma.11G256800 Glycine max HOM05D000764 ORTHO05D004953 0.0e+00 2602.4 1991 68.3
MSTRG.16793 Avicennia marina HOM05D000764 ORTHO05D004953 0.0e+00 2597.8 1993 69.0
vmacro06919 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 0.0e+00 2597.4 1897 73.5
FAN21G0270 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2594.7 2037 68.1
Oeu021897.1 Olea europaea HOM05D000764 ORTHO05D004953 0.0e+00 2591.6 2058 67.5
TPR.G19327 Trifolium pratense HOM05D000764 ORTHO05D004953 0.0e+00 2590.8 1996 68.4
FAN25G3812 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2589.3 1999 69.1
Eucgr.J01768 Eucalyptus grandis HOM05D000764 ORTHO05D004953 0.0e+00 2578.9 1990 67.8
Sed0024847 Sechium edule HOM05D000764 ORTHO05D004953 0.0e+00 2578.9 1991 67.8
ClCG03G014510 Citrullus lanatus HOM05D000764 ORTHO05D004953 0.0e+00 2576.6 2101 65.3
Solyc04g039950.4 Solanum lycopersicum HOM05D000764 ORTHO05D004953 0.0e+00 2571.2 1996 68.1
DCAR_029576 Daucus carota HOM05D000764 ORTHO05D004953 0.0e+00 2563.1 1996 66.2
Ca_16376_v3 Cicer arietinum L. HOM05D000764 ORTHO05D004953 0.0e+00 2553.1 1987 67.6
Sabra03G0164300 Salix brachista HOM05D000764 ORTHO05D004953 0.0e+00 2546.5 1980 68.7
Medtr3g083500 Medicago truncatula HOM05D000764 ORTHO05D004953 0.0e+00 2543.1 1993 67.4
Lalb_Chr23g0278471 Lupinus albus HOM05D000764 ORTHO05D004953 0.0e+00 2540.4 1995 67.4
Migut.L00381 Erythranthe guttata HOM05D000764 ORTHO05D004953 0.0e+00 2539.2 1997 67.6
Nn7g35865 Nelumbo nucifera HOM05D000764 ORTHO05D004953 0.0e+00 2530.0 2007 66.3
Aqoxy3G01104 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 0.0e+00 2502.2 1998 65.8
Hund07595 Selenicereus undatus HOM05D000764 ORTHO05D004953 0.0e+00 2501.9 2055 64.1
MBI11_g24613_MAGBIO Magnolia biondii HOM05D000764 ORTHO05D004953 0.0e+00 2481.4 1987 65.4
FAN16G0168 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2468.7 2013 66.5
EL10Ac4g10385 Beta vulgaris HOM05D000764 ORTHO05D004953 0.0e+00 2464.5 1985 63.6
ECA233G5672 Erigeron canadensis HOM05D000764 ORTHO05D004953 0.0e+00 2464.5 1995 66.5
Psat5g101160 Pisum sativum HOM05D000764 ORTHO05D004953 0.0e+00 2460.6 1997 65.9
MELO3C015581.2 Cucumis melo HOM05D000764 ORTHO05D004953 0.0e+00 2457.6 2103 63.3
HanXRQChr13g0405791 Helianthus annuus HOM05D000764 ORTHO05D004953 0.0e+00 2400.9 1993 65.2
AUR62040904 Chenopodium quinoa HOM05D000764 ORTHO05D004953 0.0e+00 2365.9 1979 61.5
THA.LOC104810327 Tarenaya hassleriana HOM05D000764 ORTHO05D004953 0.0e+00 2333.1 1986 62.6
Peaxi162Scf00970g00016 Petunia axillaris HOM05D000764 ORTHO05D004953 0.0e+00 2305.0 1883 65.6
AT1G55325 Arabidopsis thaliana HOM05D000764 ORTHO05D004953 0.0e+00 2301.9 1988 61.9
Thhalv10011178m.g Eutrema salsugineum HOM05D000764 ORTHO05D004953 0.0e+00 2295.8 1988 61.9
Sp1g41000 Schrenkiella parvula HOM05D000764 ORTHO05D004953 0.0e+00 2291.5 1988 61.6
Carub.0001s4383 Capsella rubella HOM05D000764 ORTHO05D004953 0.0e+00 2288.5 1987 61.8
CARHR044980 Cardamine hirsuta HOM05D000764 ORTHO05D004953 0.0e+00 2287.7 1986 61.5
AL1G63370 Arabidopsis lyrata HOM05D000764 ORTHO05D004953 0.0e+00 2281.9 1991 61.6
PSO339G2492 Papaver somniferum HOM05D000764 ORTHO05D004953 0.0e+00 2279.6 2009 62.8
Lsat_1_v5_gn_6_53100 Lactuca sativa HOM05D000764 ORTHO05D004953 0.0e+00 2272.7 2017 62.1
SGA_v2.0_scaffold58G20565 Striga asiatica HOM05D000764 ORTHO05D004953 0.0e+00 2270.4 2157 59.1
Aa31LG10G1120 Aethionema arabicum HOM05D000764 ORTHO05D004953 0.0e+00 2248.0 1997 60.8
Nitab4.5_0000799g0100 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 2232.6 1783 66.0
BraA06t23242Z Brassica rapa HOM05D000764 ORTHO05D004953 0.0e+00 2214.5 2014 59.9
A06p00260 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 2211.0 1982 60.5
A05p17530 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 2209.1 1987 60.2
BraA05t20647Z Brassica rapa HOM05D000764 ORTHO05D004953 0.0e+00 2202.9 2004 59.9
THA.LOC104822680 Tarenaya hassleriana HOM05D000764 ORTHO05D004953 0.0e+00 2198.3 1984 59.5
C06p10270 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 2197.5 1982 59.9
BolC6t36790H Brassica oleracea HOM05D000764 ORTHO05D004953 0.0e+00 2191.0 2021 59.4
C06p15980 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 2183.3 1982 59.7
BolC6t36102H Brassica oleracea HOM05D000764 ORTHO05D004953 0.0e+00 2181.4 2013 59.3
Nitab4.5_0003134g0150 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 2135.5 1758 64.5
Sc21g0002730 Simmondsia chinensis HOM05D000764 ORTHO05D004953 0.0e+00 2081.2 1664 64.5
BcaC08g44192 Brassica carinata HOM05D000764 ORTHO05D004953 0.0e+00 2021.1 1986 56.9
ATR0490G003 Amborella trichopoda HOM05D000764 ORTHO05D004953 0.0e+00 1985.7 2038 54.7
Hma1.2p1_0449F.1_g155090 Hydrangea macrophylla HOM05D000764 ORTHO05D004953 0.0e+00 1963.7 1357 74.5
Thecc.05G133300 Theobroma cacao HOM05D000764 ORTHO05D004953 0.0e+00 1916.4 1438 70.3
SalBow6G5302 Salvia bowleyana HOM05D000764 ORTHO05D004953 0.0e+00 1870.9 1485 66.5
Lj2A763G35 Lonicera japonica HOM05D000764 ORTHO05D004953 0.0e+00 1862.8 1718 60.7
Zm00001eb379470 Zea mays HOM05D000764 ORTHO05D004953 0.0e+00 1739.2 2011 50.5
Nitab4.5_0005544g0060 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 1610.9 2028 48.7
TAR623G0710 Trochodendron aralioides HOM05D000764 ORTHO05D004953 0.0e+00 1610.5 1187 71.9
VMungo1080G1230 Vigna mungo HOM05D000764 ORTHO05D004953 0.0e+00 1604.0 1238 66.7
SEGI_09587 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 0.0e+00 1545.8 1897 47.8
SalBow6G3750 Salvia bowleyana HOM05D000764 ORTHO05D004953 0.0e+00 1412.5 1183 65.1
SEGI_04814 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 0.0e+00 1396.7 1604 49.3
CDE10G0573 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 0.0e+00 1289.6 1410 50.6
Cpa.g.sc119.44 Carica papaya HOM05D000764 ORTHO05D004953 0.0e+00 1196.0 772 78.0
TAR623G0474 Trochodendron aralioides HOM05D000764 ORTHO05D004953 0.0e+00 1191.8 770 78.6
COL.COLO4_07280 Corchorus olitorius HOM05D000764 ORTHO05D004953 0.0e+00 1145.2 772 75.5
vmacro06915 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 0.0e+00 1086.2 1294 51.7
Aqoxy368s001 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 1.3e-301 1040.8 1040 55.7
AUR62019164 Chenopodium quinoa HOM05D000764 ORTHO05D004953 2.8e-299 1033.1 835 62.6
CDE10G0575 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 5.5e-295 1018.8 977 55.6
AUR62019165 Chenopodium quinoa HOM05D000764 ORTHO05D004953 1.5e-289 1000.7 1187 48.9
Mapoly0029s0052 Marchantia polymorpha HOM05D000764 ORTHO05D004953 2.2e-280 970.3 2152 34.8
Pp3c11_22280 Physcomitrium patens HOM05D000764 ORTHO05D004953 2.1e-270 937.2 2166 33.7
AagrBONN_evm.TU.Sc2ySwM_117.2245 Anthoceros agrestis HOM05D000764 ORTHO05D004953 3.1e-221 773.9 2001 33.3
SHI31301 Sapria himalayana HOM05D000764 ORTHO05D004953 1.6e-214 751.5 1018 44.4
Migut.L00380 Erythranthe guttata HOM05D000764 ORTHO05D004953 1.1e-199 702.2 648 60.6
Migut.L00371 Erythranthe guttata HOM05D000764 ORTHO05D004953 3.4e-196 690.6 426 77.9
SalBow6G2556 Salvia bowleyana HOM05D000764 ORTHO05D004953 5.8e-196 689.9 542 66.2
SMO365G0018 Selaginella moellendorffii HOM05D000764 ORTHO05D004953 2.8e-190 671.0 1945 30.4
Pp3c7_4610 Physcomitrium patens HOM05D000764 ORTHO05D004953 1.1e-181 642.5 1619 32.4
Os05g0447500 Oryza sativa ssp. japonica HOM05D000764 ORTHO05D004953 1.1e-178 632.5 593 55.6
Actinidia02700 Actinidia chinensis HOM05D000764 ORTHO05D004953 2.7e-161 574.7 320 86.6
Lj2A763G34 Lonicera japonica HOM05D000764 ORTHO05D004953 2.3e-152 545.0 503 60.6
Actinidia02701 Actinidia chinensis HOM05D000764 ORTHO05D004953 5.7e-143 513.8 317 83.0
CDE10G0477 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 6.8e-136 490.3 776 41.6
VMungo1080G0389 Vigna mungo HOM05D000764 ORTHO05D004953 6.8e-120 437.2 381 65.6
SHI31298 Sapria himalayana HOM05D000764 ORTHO05D004953 9.8e-119 433.3 536 48.5
SEGI_19391 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 1.4e-112 412.9 416 52.2
Actinidia15647 Actinidia chinensis HOM05D000764 ORTHO05D004953 2.1e-108 399.1 219 88.1
Os05g0447580 Oryza sativa ssp. japonica HOM05D000764 ORTHO05D004953 3.3e-106 391.7 358 57.5
Hma1.2p1_0449F.1_g155100 Hydrangea macrophylla HOM05D000764 ORTHO05D004953 3.1e-96 358.6 210 81.0
Aqoxy6G02541 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 4.0e-96 358.2 278 68.3
CiPaw.14G136600 Carya illinoinensis HOM05D000764 ORTHO05D004953 4.8e-89 334.7 238 71.0
VMungo1080G1023 Vigna mungo HOM05D000764 ORTHO05D004953 4.6e-84 318.2 187 81.8
Dinv39954 Davidia involucrata HOM05D000764 ORTHO05D004953 3.6e-81 308.5 294 57.5
CAN.G610.44 Capsicum annuum HOM05D000764 ORTHO05D004953 3.4e-79 302.0 297 56.6
VMungo1080G1824 Vigna mungo HOM05D000764 ORTHO05D004953 2.1e-76 292.7 166 83.7
CBR_g38308 Chara braunii HOM05D000019 ORTHO05D000048 4.3e-74 285.0 1090 26.5
vmacro06920 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 4.8e-73 281.6 159 84.3
Rhsim12G0118500 Rhododendron simsii HOM05D000764 ORTHO05D004953 4.0e-72 278.5 463 45.4
CAN.G1237.45 Capsicum annuum HOM05D000764 ORTHO05D004953 4.5e-71 275.0 424 43.6
COL.COLO4_07282 Corchorus olitorius HOM05D000764 ORTHO05D004953 1.9e-69 269.6 163 79.8
Cpa.g.sc119.45 Carica papaya HOM05D000764 ORTHO05D004953 3.2e-69 268.9 974 28.5
CAN.G1237.21 Capsicum annuum HOM05D000764 ORTHO05D004953 1.1e-64 253.8 264 53.8
Psat6g137480 Pisum sativum HOM05D000493 ORTHO05D004953 2.3e-59 236.1 334 44.9
CAN.G1237.46 Capsicum annuum HOM05D000764 ORTHO05D004953 1.5e-58 233.4 240 55.4
VMungo1383G3575 Vigna mungo HOM05D000764 ORTHO05D004953 1.6e-57 229.9 389 43.4
SEGI_38078 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 6.3e-57 228.0 164 67.7
CDE10G0100 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 5.5e-53 214.9 319 39.5
HPP92_009741 Vanilla planifolia HOM05D000764 ORTHO05D004953 1.8e-48 199.9 608 29.8
CDE10G1322 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 2.6e-47 196.1 125 70.4
Dinv39953 Davidia involucrata HOM05D000100 ORTHO05D000052 7.2e-45 188.0 123 80.5
CAN.G1248.23 Capsicum annuum HOM05D000764 ORTHO05D009197 2.1e-36 159.8 126 66.7
CAN.G1237.22 Capsicum annuum HOM05D000764 ORTHO05D004953 2.8e-33 149.4 99 73.7
Nn1g03529 Nelumbo nucifera HOM05D000764 ORTHO05D004953 2.7e-28 132.9 73 80.8
Oeu017835.1 Olea europaea HOM05D000764 ORTHO05D004953 2.6e-26 126.3 109 65.1
Psat5g238800 Pisum sativum HOM05D000764 ORTHO05D002785 1.7e-22 113.6 112 58.9
Psat5g238960 Pisum sativum HOM05D000764 ORTHO05D002785 1.7e-22 113.6 112 58.9
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 1.4e-19 104.0 122 57.4
Psat2g093280 Pisum sativum HOM05D002199 ORTHO05D007829 3.0e-19 102.8 146 49.3
SHI31294 Sapria himalayana HOM05D000764 ORTHO05D004953 1.2e-18 100.9 116 50.0
SHI31299 Sapria himalayana HOM05D000764 ORTHO05D004953 4.4e-18 99.0 135 48.1
SHI31300 Sapria himalayana HOM05D000764 ORTHO05D004953 1.3e-17 97.4 68 66.2
CiPaw.14G136500 Carya illinoinensis HOM05D000764 ORTHO05D004953 1.1e-16 94.4 67 68.7
SHI31296 Sapria himalayana HOM05D000764 ORTHO05D004953 1.6e-15 90.5 110 44.5
Thhalv10012088m.g Eutrema salsugineum HOM05D000764 ORTHO05D004953 3.5e-15 89.4 152 42.1
Sc16g0012210 Simmondsia chinensis HOM05D000764 ORTHO05D004953 2.5e-13 83.2 165 38.2
BcaC03g15090 Brassica carinata HOM05D000951 ORTHO05D032059 1.2e-12 80.9 108 44.4
BolC2t08722H Brassica oleracea HOM05D000951 ORTHO05D032059 1.2e-12 80.9 108 44.4
CAN.G1237.23 Capsicum annuum HOM05D000764 ORTHO05D010647 2.0e-10 73.6 103 45.6
PSO339G0018 Papaver somniferum HOM05D000164 ORTHO05D000096 1.3e-09 70.9 87 48.3
MELO3C030779.2 Cucumis melo HOM05D000764 ORTHO05D004953 1.4e-08 67.4 93 43.0
CBR_g38302 Chara braunii HOM05D000019 ORTHO05D000353 2.4e-08 66.6 80 45.0
C07p61900 Brassica napus HOM05D000764 ORTHO05D004953 3.5e-07 62.8 36 83.3
SMO358G0275 Selaginella moellendorffii HOM05D015080 ORTHO05D019362 6.6e-06 58.5 79 34.2


User provided reference genes

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