Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037592 Camellia sinensis var. sinensis HOM05D002316 ORTHO05D002280 2.0e-80 302.4 152 100.0
CSS0010846 Camellia sinensis var. sinensis HOM05D002316 ORTHO05D002280 5.5e-62 241.1 121 100.0
CSS0001569 Camellia sinensis var. sinensis HOM05D002316 ORTHO05D002280 1.1e-59 233.4 117 100.0
CSS0017215 Camellia sinensis var. sinensis HOM05D002316 ORTHO05D002280 3.1e-57 225.3 118 96.6
CSS0007790 Camellia sinensis var. sinensis HOM05D002316 ORTHO05D002280 4.5e-56 221.5 116 95.7
Dinv37816 Davidia involucrata HOM05D002316 ORTHO05D002280 8.8e-52 207.2 117 88.9
GSVIVG01016660001 Vitis vinifera HOM05D002316 ORTHO05D002280 5.3e-49 198.0 137 74.5
Actinidia21843 Actinidia chinensis HOM05D002316 ORTHO05D002280 2.0e-48 196.1 146 73.3
Gohir.A10G050200 Gossypium hirsutum HOM05D002316 ORTHO05D002280 2.0e-48 196.1 117 82.9
Cpa.g.sc25.201 Carica papaya HOM05D002316 ORTHO05D002280 3.4e-48 195.3 118 80.5
QL05p000933 Quercus lobata HOM05D002316 ORTHO05D002280 4.5e-48 194.9 117 82.1
Dinv20376 Davidia involucrata HOM05D002316 ORTHO05D002280 7.7e-48 194.1 129 79.1
Gohir.A05G142100 Gossypium hirsutum HOM05D002316 ORTHO05D002280 1.3e-47 193.4 117 80.3
Gohir.D05G144400 Gossypium hirsutum HOM05D002316 ORTHO05D002280 1.3e-47 193.4 117 80.3
QL05p001077 Quercus lobata HOM05D002316 ORTHO05D002280 1.3e-47 193.4 117 81.2
CSS0023276 Camellia sinensis var. sinensis HOM05D002316 ORTHO05D002280 1.7e-47 193.0 97 97.9
Gohir.D10G050800 Gossypium hirsutum HOM05D002316 ORTHO05D002280 1.7e-47 193.0 117 81.2
Gorai.009G148300 Gossypium raimondii HOM05D002316 ORTHO05D002280 1.7e-47 193.0 117 80.3
PSO724G1377 Papaver somniferum HOM05D002316 ORTHO05D002280 3.8e-47 191.8 118 79.7
PSO135G1018 Papaver somniferum HOM05D002316 ORTHO05D002280 6.5e-47 191.0 118 78.8
Nn6g35747 Nelumbo nucifera HOM05D002316 ORTHO05D002280 8.5e-47 190.7 137 70.8
Oeu013438.1 Olea europaea HOM05D002316 ORTHO05D002280 8.5e-47 190.7 118 78.0
MBI19_g32879_MAGBIO Magnolia biondii HOM05D002316 ORTHO05D002280 2.5e-46 189.1 117 80.3
Atru.chr1.4173 Acer truncatum HOM05D002316 ORTHO05D002280 1.2e-45 186.8 117 79.5
COL.COLO4_30878 Corchorus olitorius HOM05D002316 ORTHO05D002280 1.2e-45 186.8 117 78.6
Gorai.011G054500 Gossypium raimondii HOM05D002316 ORTHO05D002280 1.6e-45 186.4 114 80.7
Nitab4.5_0006338g0020 Nicotiana tabacum HOM05D002316 ORTHO05D002280 2.1e-45 186.0 117 78.6
Nitab4.5_0006966g0030 Nicotiana tabacum HOM05D002316 ORTHO05D002280 2.1e-45 186.0 117 78.6
Lj5A28T49 Lonicera japonica HOM05D002316 ORTHO05D002280 2.7e-45 185.7 117 77.8
MBI13_g41710_MAGBIO Magnolia biondii HOM05D002316 ORTHO05D002280 3.6e-45 185.3 117 76.9
vmacro18716 Vaccinium macrocarpon HOM05D002316 ORTHO05D002280 4.7e-45 184.9 116 79.3
CiPaw.02G130400 Carya illinoinensis HOM05D002316 ORTHO05D002280 6.1e-45 184.5 117 80.3
MD17G1154900 Malus domestica HOM05D002316 ORTHO05D002280 6.1e-45 184.5 117 79.5
RcHm_v2.0_Chr2g0148111 Rosa chinensis HOM05D002316 ORTHO05D002280 6.1e-45 184.5 117 78.6
Potri.003G073400 Populus trichocarpa HOM05D002316 ORTHO05D002280 7.9e-45 184.1 117 76.1
Cfa003455 Carpinus fangiana HOM05D002316 ORTHO05D002280 1.4e-44 183.3 137 70.1
Cc04_g00630 Coffea canephora HOM05D002316 ORTHO05D002280 1.4e-44 183.3 117 73.5
Manes.04G151600 Manihot esculenta HOM05D002316 ORTHO05D002280 1.4e-44 183.3 117 76.1
DCAR_022638 Daucus carota HOM05D002316 ORTHO05D002280 2.3e-44 182.6 128 70.3
Prupe.3G030400 Prunus persica HOM05D002316 ORTHO05D002280 2.3e-44 182.6 117 78.6
Thecc.06G131100 Theobroma cacao HOM05D002316 ORTHO05D002280 2.3e-44 182.6 117 77.8
FAN02G0802 Fragaria x ananassa HOM05D002316 ORTHO05D002280 3.0e-44 182.2 117 76.9
FAN05G5339 Fragaria x ananassa HOM05D002316 ORTHO05D002280 3.0e-44 182.2 117 76.9
FAN14G1755 Fragaria x ananassa HOM05D002316 ORTHO05D002280 3.0e-44 182.2 117 76.9
FAN14G3860 Fragaria x ananassa HOM05D002316 ORTHO05D002280 3.0e-44 182.2 117 76.9
TWI14G0140 Tripterygium wilfordii HOM05D002316 ORTHO05D002280 3.9e-44 181.8 125 72.8
Aqoxy7G00923 Aquilegia oxysepala HOM05D002316 ORTHO05D002280 5.2e-44 181.4 117 76.9
CsaV3_3G031100 Cucumis sativus L. HOM05D002316 ORTHO05D002280 5.2e-44 181.4 117 76.1
Migut.I01139 Erythranthe guttata HOM05D002316 ORTHO05D002280 5.2e-44 181.4 117 75.2
Eucgr.J02589 Eucalyptus grandis HOM05D002316 ORTHO05D002280 5.2e-44 181.4 117 76.1
CAN.G790.53 Capsicum annuum HOM05D002316 ORTHO05D002280 8.8e-44 180.6 117 76.1
ClCG07G014240 Citrullus lanatus HOM05D002316 ORTHO05D002280 8.8e-44 180.6 117 76.9
PGR102G1833 Punica granatum HOM05D002316 ORTHO05D002280 8.8e-44 180.6 118 73.7
SalBow6G6393 Salvia bowleyana HOM05D002316 ORTHO05D002280 8.8e-44 180.6 116 73.3
Solyc03g123700.4 Solanum lycopersicum HOM05D002316 ORTHO05D002280 8.8e-44 180.6 117 75.2
Sopen03g041470 Solanum pennellii HOM05D002316 ORTHO05D002280 8.8e-44 180.6 117 75.2
PGSC0003DMG400009152 Solanum tuberosum HOM05D002316 ORTHO05D002280 8.8e-44 180.6 117 75.2
CDE10G0003 Ceratophyllum demersum HOM05D002316 ORTHO05D002280 1.1e-43 180.3 117 77.8
FAN09G2036 Fragaria x ananassa HOM05D002316 ORTHO05D002280 1.1e-43 180.3 117 75.2
Sc15g0000830 Simmondsia chinensis HOM05D002316 ORTHO05D002280 1.1e-43 180.3 117 74.4
ATR0053G043 Amborella trichopoda HOM05D002316 ORTHO05D002280 1.5e-43 179.9 117 75.2
FvH4_6g35990 Fragaria vesca HOM05D002316 ORTHO05D002280 1.5e-43 179.9 117 76.1
CANSAT56G3763 Cannabis sativa HOM05D002316 ORTHO05D002280 2.0e-43 179.5 117 75.2
Potri.001G161900 Populus trichocarpa HOM05D002316 ORTHO05D002280 2.0e-43 179.5 125 71.2
Ciclev10025233m.g Citrus clementina HOM05D002316 ORTHO05D002280 3.3e-43 178.7 117 75.2
Sabra01G0130600 Salix brachista HOM05D002316 ORTHO05D002280 5.7e-43 177.9 117 73.5
Actinidia24418 Actinidia chinensis HOM05D002316 ORTHO05D002280 3.7e-42 175.3 137 66.4
MD09G1172000 Malus domestica HOM05D002316 ORTHO05D002280 3.7e-42 175.3 117 74.4
TAR624G0517 Trochodendron aralioides HOM05D002316 ORTHO05D002280 3.7e-42 175.3 117 74.4
Sed0002975 Sechium edule HOM05D002316 ORTHO05D002280 6.3e-42 174.5 117 73.5
Duzib235G0584 Durio zibethinus HOM05D002316 ORTHO05D002280 8.2e-42 174.1 117 76.1
MELO3C026660.2 Cucumis melo HOM05D002316 ORTHO05D002280 1.8e-41 172.9 117 72.6
BcaC08g43557 Brassica carinata HOM05D002316 ORTHO05D002280 4.1e-41 171.8 118 69.5
C06p09560 Brassica napus HOM05D002316 ORTHO05D002280 4.1e-41 171.8 118 69.5
BolC6t36030H Brassica oleracea HOM05D002316 ORTHO05D002280 4.1e-41 171.8 118 69.5
BraA06t23311Z Brassica rapa HOM05D002316 ORTHO05D002280 5.3e-41 171.4 118 69.5
CiPaw.01G210800 Carya illinoinensis HOM05D002316 ORTHO05D002280 5.3e-41 171.4 117 75.2
Ah.03g139400 Amaranthus hybridus HOM05D002316 ORTHO05D002280 7.0e-41 171.0 117 71.8
Rhsim08G0245300 Rhododendron simsii HOM05D002316 ORTHO05D002280 7.0e-41 171.0 119 73.9
TWI59G0933 Tripterygium wilfordii HOM05D002316 ORTHO05D002280 7.0e-41 171.0 130 68.5
A06p00770 Brassica napus HOM05D002316 ORTHO05D002280 9.1e-41 170.6 118 69.5
arahy.Tifrunner.gnm1.ann1.82DMKZ Arachis hypogaea HOM05D002316 ORTHO05D002280 1.6e-40 169.9 117 71.8
arahy.Tifrunner.gnm1.ann1.JMV1FI Arachis hypogaea HOM05D002316 ORTHO05D002280 1.6e-40 169.9 117 71.8
unitig_32.g10996 Utricularia gibba HOM05D002316 ORTHO05D002280 1.6e-40 169.9 117 70.9
vmacro18717 Vaccinium macrocarpon HOM05D002316 ORTHO05D002280 1.6e-40 169.9 116 74.1
Duzib192G1048 Durio zibethinus HOM05D002316 ORTHO05D002280 3.5e-40 168.7 125 70.4
Migut.D00907 Erythranthe guttata HOM05D002316 ORTHO05D002280 4.5e-40 168.3 117 70.1
THA.LOC104810398 Tarenaya hassleriana HOM05D002316 ORTHO05D002280 7.7e-40 167.5 119 69.7
Sabra03G0044000 Salix brachista HOM05D002316 ORTHO05D002280 1.0e-39 167.2 109 75.2
Glyma.03G262900 Glycine max HOM05D002316 ORTHO05D002280 1.7e-39 166.4 117 70.9
BcaB02g10892 Brassica carinata HOM05D002316 ORTHO05D002280 2.2e-39 166.0 118 68.6
CDE10G1231 Ceratophyllum demersum HOM05D002316 ORTHO05D002280 6.5e-39 164.5 117 73.5
THA.LOC104815594 Tarenaya hassleriana HOM05D002316 ORTHO05D002280 6.5e-39 164.5 118 68.6
VMungo1309G0979 Vigna mungo HOM05D002316 ORTHO05D002280 6.5e-39 164.5 126 66.7
AT1G53800 Arabidopsis thaliana HOM05D002316 ORTHO05D002280 8.5e-39 164.1 118 66.1
BcaB07g33301 Brassica carinata HOM05D002316 ORTHO05D002280 1.1e-38 163.7 119 68.1
A05p17910 Brassica napus HOM05D002316 ORTHO05D002280 1.1e-38 163.7 118 66.9
BraA05t20684Z Brassica rapa HOM05D002316 ORTHO05D002280 1.1e-38 163.7 118 66.9
TPR.G28875 Trifolium pratense HOM05D002316 ORTHO05D002280 1.1e-38 163.7 117 69.2
AL1G62470 Arabidopsis lyrata HOM05D002316 ORTHO05D002280 1.9e-38 162.9 118 66.1
Lj1g0006356 Lotus japonicus HOM05D002316 ORTHO05D002280 1.9e-38 162.9 117 68.4
BcaC08g44130 Brassica carinata HOM05D002316 ORTHO05D002280 2.5e-38 162.5 118 66.9
C06p15300 Brassica napus HOM05D002316 ORTHO05D002280 2.5e-38 162.5 118 66.9
BolC6t36705H Brassica oleracea HOM05D002316 ORTHO05D002280 2.5e-38 162.5 118 66.9
Carub.0001s4305 Capsella rubella HOM05D002316 ORTHO05D002280 2.5e-38 162.5 118 65.3
Lalb_Chr15g0076661 Lupinus albus HOM05D002316 ORTHO05D002280 3.2e-38 162.2 117 69.2
CARHR044090 Cardamine hirsuta HOM05D002316 ORTHO05D002280 4.2e-38 161.8 118 66.1
Peaxi162Scf00038g02328 Petunia axillaris HOM05D002316 ORTHO05D002280 4.2e-38 161.8 107 72.9
Lalb_Chr04g0261261 Lupinus albus HOM05D002316 ORTHO05D002280 5.5e-38 161.4 117 65.8
Rhsim08G0245400 Rhododendron simsii HOM05D002316 ORTHO05D002280 5.5e-38 161.4 107 72.0
Thhalv10011340m.g Eutrema salsugineum HOM05D002316 ORTHO05D002280 7.2e-38 161.0 118 65.3
Aa31LG10G1510 Aethionema arabicum HOM05D002316 ORTHO05D002280 9.4e-38 160.6 118 63.6
Glyma.19G262000 Glycine max HOM05D002316 ORTHO05D002280 9.4e-38 160.6 117 68.4
Sp1g40300 Schrenkiella parvula HOM05D002316 ORTHO05D002280 1.6e-37 159.8 118 65.3
Eucgr.I02167 Eucalyptus grandis HOM05D002316 ORTHO05D002280 2.1e-37 159.5 118 66.1
Phvul.009G261100 Phaseolus vulgaris HOM05D002316 ORTHO05D002280 2.1e-37 159.5 126 64.3
Ca_09566_v3 Cicer arietinum L. HOM05D002316 ORTHO05D002280 3.6e-37 158.7 117 67.5
Medtr7g117530 Medicago truncatula HOM05D002316 ORTHO05D002280 4.7e-37 158.3 117 69.2
vmacro18773 Vaccinium macrocarpon HOM05D002316 ORTHO05D002280 6.1e-37 157.9 116 70.7
Ah.15g094840 Amaranthus hybridus HOM05D002316 ORTHO05D002280 4.0e-36 155.2 118 66.9
EL10Ac6g14924 Beta vulgaris HOM05D002316 ORTHO05D002280 8.8e-36 154.1 117 63.2
PGR119G0057 Punica granatum HOM05D002316 ORTHO05D002280 8.8e-36 154.1 122 63.9
arahy.Tifrunner.gnm1.ann1.L7TQPJ Arachis hypogaea HOM05D002316 ORTHO05D002280 3.3e-35 152.1 119 66.4
DCAR_016087 Daucus carota HOM05D002316 ORTHO05D002280 3.3e-35 152.1 105 72.4
arahy.Tifrunner.gnm1.ann1.3AJ3RF Arachis hypogaea HOM05D002316 ORTHO05D002280 1.7e-34 149.8 107 69.2
arahy.Tifrunner.gnm1.ann1.RGSX4D Arachis hypogaea HOM05D002316 ORTHO05D002280 4.8e-34 148.3 130 60.8
Psat0s3082g0160 Pisum sativum HOM05D002316 ORTHO05D002280 4.8e-34 148.3 117 61.5
Os10g0198600 Oryza sativa ssp. japonica HOM05D002316 ORTHO05D002280 1.1e-33 147.1 115 61.7
arahy.Tifrunner.gnm1.ann1.GJ1EJQ Arachis hypogaea HOM05D002316 ORTHO05D002280 7.0e-33 144.4 124 58.9
Lalb_Chr17g0343181 Lupinus albus HOM05D002316 ORTHO05D002280 7.0e-33 144.4 127 59.8
HPP92_024371 Vanilla planifolia HOM05D002316 ORTHO05D002280 1.2e-32 143.7 116 61.2
HPP92_027909 Vanilla planifolia HOM05D002316 ORTHO05D002280 1.2e-32 143.7 116 61.2
Zm00001eb066360 Zea mays HOM05D002316 ORTHO05D002280 1.2e-32 143.7 115 57.4
SGA_v2.0_scaffold71G23943 Striga asiatica HOM05D002316 ORTHO05D002280 4.5e-32 141.7 119 61.3
Lalb_Chr04g0253971 Lupinus albus HOM05D002316 ORTHO05D002280 2.9e-31 139.0 127 55.9
TAR375G0959 Trochodendron aralioides HOM05D002316 ORTHO05D002280 8.5e-31 137.5 83 80.7
SGA_v2.0_scaffold122G33301 Striga asiatica HOM05D000070 ORTHO05D002280 1.5e-30 136.7 106 65.1
HPP92_024475 Vanilla planifolia HOM05D002316 ORTHO05D002280 2.5e-30 136.0 116 58.6
CDE05G3243 Ceratophyllum demersum HOM05D002316 ORTHO05D002280 1.6e-29 133.3 94 71.3
AUR62007994 Chenopodium quinoa HOM05D002316 ORTHO05D002280 4.7e-29 131.7 117 56.4
arahy.Tifrunner.gnm1.ann1.7Q31U7 Arachis hypogaea HOM05D002316 ORTHO05D002280 5.2e-28 128.3 94 64.9
AUR62003176 Chenopodium quinoa HOM05D002316 ORTHO05D002280 1.2e-27 127.1 86 68.6
HanXRQChr12g0360051 Helianthus annuus HOM05D002316 ORTHO05D002280 5.7e-27 124.8 119 58.0
Hund18630 Selenicereus undatus HOM05D002316 ORTHO05D002280 1.3e-26 123.6 115 53.9
ECA234G4725 Erigeron canadensis HOM05D002316 ORTHO05D002280 2.4e-25 119.4 118 56.8
HanXRQChr02g0033821 Helianthus annuus HOM05D002316 ORTHO05D002280 2.4e-25 119.4 108 57.4
Lj3g0022142 Lotus japonicus HOM05D002316 ORTHO05D002280 9.1e-25 117.5 111 55.9
Hund18629 Selenicereus undatus HOM05D002316 ORTHO05D002280 1.2e-24 117.1 141 47.5
Lsat_1_v5_gn_5_137661 Lactuca sativa HOM05D002316 ORTHO05D002280 3.8e-23 112.1 127 48.8
arahy.Tifrunner.gnm1.ann1.VE80E0 Arachis hypogaea HOM05D002316 ORTHO05D002280 2.5e-22 109.4 117 55.6
Sed0007223 Sechium edule HOM05D002316 ORTHO05D002280 2.1e-21 106.3 114 53.5
SEGI_28906 Sequoiadendron giganteum HOM05D002316 ORTHO05D002280 6.1e-21 104.8 109 49.5
Lj9C539G6 Lonicera japonica HOM05D002316 ORTHO05D002280 8.8e-20 100.9 71 70.4
HanXRQChr10g0311621 Helianthus annuus HOM05D002316 ORTHO05D002280 1.6e-16 90.1 105 43.8
AagrBONN_evm.TU.Sc2ySwM_362.2355 Anthoceros agrestis HOM05D002316 ORTHO05D002280 1.1e-14 84.0 122 41.0
SEGI_23297 Sequoiadendron giganteum HOM05D002316 ORTHO05D002280 2.5e-14 82.8 127 37.8
Pp3c23_5090 Physcomitrium patens HOM05D002316 ORTHO05D002280 2.1e-13 79.7 119 43.7
Psat1g193320 Pisum sativum HOM05D002316 ORTHO05D019804 2.8e-13 79.3 82 51.2
Mapoly0056s0004 Marchantia polymorpha HOM05D002316 ORTHO05D002280 6.1e-13 78.2 114 36.8
Pp3c20_11380 Physcomitrium patens HOM05D002316 ORTHO05D002280 1.4e-12 77.0 119 39.5
SEGI_25181 Sequoiadendron giganteum HOM05D002316 ORTHO05D002280 1.5e-11 73.6 103 38.8
SMO347G0244 Selaginella moellendorffii HOM05D002316 ORTHO05D002280 2.9e-10 69.3 104 39.4
Glyma.12G160300 Glycine max HOM05D002316 ORTHO05D002280 2.7e-08 62.8 90 36.7
TPR.G34410 Trifolium pratense HOM05D002316 ORTHO05D002280 2.7e-08 62.8 53 60.4
ATR0733G115 Amborella trichopoda HOM05D002316 ORTHO05D002280 5.9e-08 61.6 138 33.3
Manes.02G100500 Manihot esculenta HOM05D002316 ORTHO05D002280 8.6e-07 57.8 104 29.8
MBI06_g25991_MAGBIO Magnolia biondii HOM05D002316 ORTHO05D002280 1.1e-06 57.4 110 26.4
Nn1g09090 Nelumbo nucifera HOM05D002316 ORTHO05D002280 1.5e-06 57.0 108 31.5
TPR.G11240 Trifolium pratense HOM05D002316 ORTHO05D002280 1.9e-06 56.6 85 34.1
VMungo1127G0079 Vigna mungo HOM05D002316 ORTHO05D002280 1.9e-06 56.6 95 31.6
CBR_g30616 Chara braunii HOM05D002316 ORTHO05D002280 2.5e-06 56.2 110 32.7
Lj3g0021485 Lotus japonicus HOM05D002316 ORTHO05D002280 3.3e-06 55.8 76 35.5
Phvul.011G159500 Phaseolus vulgaris HOM05D002316 ORTHO05D002280 3.3e-06 55.8 95 34.7
Hund02243 Selenicereus undatus HOM05D002316 ORTHO05D002280 4.3e-06 55.5 90 31.1
COL.COLO4_17596 Corchorus olitorius HOM05D002316 ORTHO05D002280 5.6e-06 55.1 85 32.9
AL1G61670 Arabidopsis lyrata HOM05D002316 ORTHO05D002280 7.3e-06 54.7 101 33.7
Carub.0001s4244 Capsella rubella HOM05D002316 ORTHO05D002280 7.3e-06 54.7 76 39.5
Ca_26990_v3 Cicer arietinum L. HOM05D002316 ORTHO05D002280 7.3e-06 54.7 88 31.8
Sc03g0010430 Simmondsia chinensis HOM05D002316 ORTHO05D002280 7.3e-06 54.7 110 30.0


User provided reference genes

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