Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037584 Camellia sinensis var. sinensis HOM05D003561 ORTHO05D004351 0.0e+00 1436.4 706 100.0
CSS0023905 Camellia sinensis var. sinensis HOM05D003561 ORTHO05D004351 0.0e+00 1378.6 691 98.4
Actinidia27978 Actinidia chinensis HOM05D003561 ORTHO05D004351 0.0e+00 1083.2 694 78.8
Rhsim10G0161700 Rhododendron simsii HOM05D003561 ORTHO05D004351 2.2e-307 1058.5 692 77.5
vmacro19460 Vaccinium macrocarpon HOM05D003561 ORTHO05D004351 1.9e-298 1028.9 682 76.0
Rhsim05G0089400 Rhododendron simsii HOM05D003561 ORTHO05D004351 7.1e-298 1026.9 765 70.2
Dinv15779 Davidia involucrata HOM05D003561 ORTHO05D004351 1.2e-289 999.6 686 74.9
Oeu011151.1 Olea europaea HOM05D003561 ORTHO05D004351 4.0e-264 914.8 686 69.1
Cfa004615 Carpinus fangiana HOM05D003561 ORTHO05D004351 1.2e-263 913.3 690 69.1
QL11p032306 Quercus lobata HOM05D003561 ORTHO05D004351 3.2e-258 895.2 693 67.5
Haze_10212 Corylus avellana HOM05D003561 ORTHO05D004351 8.8e-256 887.1 665 69.5
Atru.chr5.2428 Acer truncatum HOM05D003561 ORTHO05D004351 5.7e-255 884.4 686 66.9
Lj5A216G104 Lonicera japonica HOM05D003561 ORTHO05D004351 3.7e-254 881.7 688 68.2
GSVIVG01037885001 Vitis vinifera HOM05D003561 ORTHO05D004351 8.3e-254 880.6 679 66.0
TAR381G0090 Trochodendron aralioides HOM05D003561 ORTHO05D004351 2.4e-253 879.0 680 65.9
Ciclev10027851m.g Citrus clementina HOM05D003561 ORTHO05D004351 9.5e-250 867.1 673 65.2
Potri.009G092500 Populus trichocarpa HOM05D003561 ORTHO05D004351 3.7e-246 855.1 702 63.8
Nitab4.5_0001480g0050 Nicotiana tabacum HOM05D003561 ORTHO05D004351 2.4e-245 852.4 697 64.6
MD05G1093800 Malus domestica HOM05D003561 ORTHO05D004351 3.2e-245 852.0 688 65.4
Thecc.02G112400 Theobroma cacao HOM05D003561 ORTHO05D004351 9.2e-245 850.5 690 64.8
Nitab4.5_0010275g0030 Nicotiana tabacum HOM05D003561 ORTHO05D004351 1.2e-244 850.1 677 65.4
MSTRG.16699 Avicennia marina HOM05D003561 ORTHO05D004351 1.0e-243 847.0 694 64.1
PGSC0003DMG400025758 Solanum tuberosum HOM05D003561 ORTHO05D004351 4.3e-242 841.6 681 64.9
Nn5g30480 Nelumbo nucifera HOM05D003561 ORTHO05D004351 1.6e-241 839.7 694 62.5
Potri.001G297600 Populus trichocarpa HOM05D003561 ORTHO05D004351 2.1e-241 839.3 691 62.7
Migut.B00411 Erythranthe guttata HOM05D003561 ORTHO05D004351 4.0e-240 835.1 684 63.3
Solyc01g107360.4 Solanum lycopersicum HOM05D003561 ORTHO05D004351 5.2e-240 834.7 691 63.4
Sopen01g049600 Solanum pennellii HOM05D003561 ORTHO05D004351 6.8e-240 834.3 676 64.5
RcHm_v2.0_Chr6g0254331 Rosa chinensis HOM05D003561 ORTHO05D004351 1.5e-239 833.2 687 64.3
Duzib132G1062 Durio zibethinus HOM05D003561 ORTHO05D004351 2.6e-239 832.4 685 63.5
SalBow6G5634 Salvia bowleyana HOM05D003561 ORTHO05D004351 2.2e-238 829.3 734 59.5
Manes.10G073266 Manihot esculenta HOM05D003561 ORTHO05D004351 1.1e-237 827.0 691 62.8
Phvul.007G042500 Phaseolus vulgaris HOM05D003561 ORTHO05D004351 1.4e-237 826.6 689 63.3
FAN15G0682 Fragaria x ananassa HOM05D003561 ORTHO05D004351 1.2e-236 823.5 686 63.3
FAN24G1860 Fragaria x ananassa HOM05D003561 ORTHO05D004351 1.2e-236 823.5 686 63.6
Sabra09G0071200 Salix brachista HOM05D003561 ORTHO05D004351 2.0e-236 822.8 689 62.0
Cc02_g19520 Coffea canephora HOM05D003561 ORTHO05D004351 2.7e-236 822.4 683 64.6
Gorai.005G233700 Gossypium raimondii HOM05D003561 ORTHO05D004351 1.7e-235 819.7 679 62.6
Peaxi162Scf00016g02531 Petunia axillaris HOM05D003561 ORTHO05D004351 3.0e-235 818.9 658 65.0
Gohir.A03G184800 Gossypium hirsutum HOM05D003561 ORTHO05D004351 1.9e-234 816.2 679 62.4
Psat6g216560 Pisum sativum HOM05D003561 ORTHO05D004351 2.5e-234 815.8 687 62.4
Ca_11052_v3 Cicer arietinum L. HOM05D003561 ORTHO05D004351 4.3e-234 815.1 690 62.2
FAN27G2112 Fragaria x ananassa HOM05D003561 ORTHO05D004351 5.6e-234 814.7 686 62.8
arahy.Tifrunner.gnm1.ann1.IMHW03 Arachis hypogaea HOM05D003561 ORTHO05D004351 1.6e-233 813.1 684 62.7
arahy.Tifrunner.gnm1.ann1.Q24X8K Arachis hypogaea HOM05D003561 ORTHO05D004351 2.8e-233 812.4 684 62.9
Lalb_Chr02g0145171 Lupinus albus HOM05D003561 ORTHO05D004351 1.1e-232 810.4 687 62.3
FvH4_2g04670 Fragaria vesca HOM05D003561 ORTHO05D004351 2.3e-232 809.3 686 62.5
Lj5g0023418 Lotus japonicus HOM05D003561 ORTHO05D004351 2.3e-232 809.3 687 62.0
Gohir.D02G206300 Gossypium hirsutum HOM05D003561 ORTHO05D004351 2.0e-231 806.2 679 62.0
VMungo0720G2973 Vigna mungo HOM05D003561 ORTHO05D004351 2.9e-230 802.4 690 62.0
Medtr1g106905 Medicago truncatula HOM05D003561 ORTHO05D004351 3.7e-230 802.0 687 61.9
Eucgr.G01293 Eucalyptus grandis HOM05D003561 ORTHO05D004351 5.4e-229 798.1 680 60.6
TPR.G27110 Trifolium pratense HOM05D003561 ORTHO05D004351 8.6e-227 790.8 695 60.9
COL.COLO4_32560 Corchorus olitorius HOM05D003561 ORTHO05D004351 1.9e-226 789.6 669 62.2
CiPaw.05G014100 Carya illinoinensis HOM05D003561 ORTHO05D004351 5.2e-224 781.6 633 64.9
PSO675G3219 Papaver somniferum HOM05D003561 ORTHO05D004351 2.0e-223 779.6 687 59.4
DCAR_001664 Daucus carota HOM05D003561 ORTHO05D004351 2.6e-223 779.2 664 61.1
PSO541G3211 Papaver somniferum HOM05D003561 ORTHO05D004351 2.4e-221 772.7 687 59.0
TWI75G1561 Tripterygium wilfordii HOM05D003561 ORTHO05D004351 2.4e-221 772.7 688 60.5
SGA_v2.0_scaffold225G43001 Striga asiatica HOM05D003561 ORTHO05D004351 4.1e-221 771.9 704 58.5
Glyma.20G131200 Glycine max HOM05D003561 ORTHO05D004351 2.7e-220 769.2 651 63.1
HanXRQChr04g0128551 Helianthus annuus HOM05D003561 ORTHO05D004351 3.9e-219 765.4 684 59.4
Prupe.8G138700 Prunus persica HOM05D003561 ORTHO05D004351 2.5e-218 762.7 603 67.3
Cfa004087 Carpinus fangiana HOM05D003561 ORTHO05D004351 4.3e-218 761.9 695 56.8
PGR042G0884 Punica granatum HOM05D003561 ORTHO05D004351 4.7e-217 758.4 702 58.4
Atru.chr3.226 Acer truncatum HOM05D003561 ORTHO05D004351 1.4e-216 756.9 678 58.6
Lsat_1_v5_gn_7_85901 Lactuca sativa HOM05D003561 ORTHO05D004351 3.4e-215 752.3 686 58.7
Aqoxy6G02799 Aquilegia oxysepala HOM05D003561 ORTHO05D004351 3.8e-214 748.8 703 56.6
CSS0044154 Camellia sinensis var. sinensis HOM05D003561 ORTHO05D004351 3.8e-214 748.8 682 57.2
ECA236G4994 Erigeron canadensis HOM05D003561 ORTHO05D004351 5.4e-213 745.0 683 58.3
Glyma.10G259600 Glycine max HOM05D003561 ORTHO05D004351 6.0e-212 741.5 687 58.7
CiPaw.01G008500 Carya illinoinensis HOM05D003561 ORTHO05D004351 8.7e-211 737.6 692 55.5
Manes.13G115200 Manihot esculenta HOM05D003561 ORTHO05D004351 2.4e-208 729.6 705 54.9
AUR62027366 Chenopodium quinoa HOM05D003561 ORTHO05D004351 9.0e-208 727.6 691 54.4
Haze_15327 Corylus avellana HOM05D003561 ORTHO05D004351 9.0e-208 727.6 667 56.8
Potri.007G051500 Populus trichocarpa HOM05D003561 ORTHO05D004351 5.8e-207 724.9 695 55.1
Hund06710 Selenicereus undatus HOM05D003561 ORTHO05D004351 8.4e-206 721.1 669 56.4
GSVIVG01000167001 Vitis vinifera HOM05D003561 ORTHO05D004351 2.4e-205 719.5 677 56.1
Actinidia12002 Actinidia chinensis HOM05D003561 ORTHO05D004351 3.5e-204 715.7 673 55.9
FAN20G0240 Fragaria x ananassa HOM05D003561 ORTHO05D004351 4.3e-202 708.8 693 57.1
Thecc.01G067200 Theobroma cacao HOM05D003561 ORTHO05D004351 1.3e-201 707.2 692 54.2
Duzib147G0573 Durio zibethinus HOM05D003561 ORTHO05D004351 1.1e-200 704.1 692 53.8
Hma1.2p1_0239F.1_g099850 Hydrangea macrophylla HOM05D003561 ORTHO05D004351 1.4e-200 703.7 673 56.6
Ciclev10024935m.g Citrus clementina HOM05D003561 ORTHO05D004351 3.1e-200 702.6 675 53.5
Lj7C86G5 Lonicera japonica HOM05D003561 ORTHO05D004351 5.3e-200 701.8 671 55.1
Ah.09g232050 Amaranthus hybridus HOM05D003561 ORTHO05D004351 4.6e-196 688.7 667 55.8
SalBow6G0742 Salvia bowleyana HOM05D003561 ORTHO05D004351 6.7e-195 684.9 687 55.5
Gohir.D03G026700 Gossypium hirsutum HOM05D003561 ORTHO05D004351 2.1e-193 679.9 672 53.7
CANSAT01G2799 Cannabis sativa HOM05D003561 ORTHO05D004351 2.8e-193 679.5 689 53.0
COL.COLO4_11519 Corchorus olitorius HOM05D003561 ORTHO05D004351 8.1e-193 677.9 657 55.6
Rhsim10G0104800 Rhododendron simsii HOM05D003561 ORTHO05D004351 1.8e-192 676.8 677 52.0
Gorai.003G028400 Gossypium raimondii HOM05D003561 ORTHO05D004351 5.3e-192 675.2 672 53.3
Gohir.A02G153700 Gossypium hirsutum HOM05D003561 ORTHO05D004351 2.9e-190 669.5 672 53.6
Nitab4.5_0000284g0010 Nicotiana tabacum HOM05D003561 ORTHO05D004351 2.5e-189 666.4 674 54.0
CAN.G1482.2 Capsicum annuum HOM05D003561 ORTHO05D004351 9.3e-189 664.5 674 54.3
Nitab4.5_0000604g0020 Nicotiana tabacum HOM05D003561 ORTHO05D004351 9.3e-189 664.5 673 53.6
PGR102G2010 Punica granatum HOM05D003561 ORTHO05D004351 2.7e-188 662.9 674 53.3
Sopen02g014910 Solanum pennellii HOM05D003561 ORTHO05D004351 1.0e-187 661.0 679 53.6
Aa31sc72G40 Aethionema arabicum HOM05D003561 ORTHO05D004351 3.0e-187 659.4 688 52.8
Solyc02g064800.3 Solanum lycopersicum HOM05D003561 ORTHO05D004351 4.3e-186 655.6 679 53.3
Prupe.6G225400 Prunus persica HOM05D003561 ORTHO05D004351 5.7e-186 655.2 674 51.2
Hund29372 Selenicereus undatus HOM05D003561 ORTHO05D004351 3.7e-185 652.5 666 52.3
Hund29375 Selenicereus undatus HOM05D003561 ORTHO05D004351 1.4e-184 650.6 666 52.3
RcHm_v2.0_Chr2g0107231 Rosa chinensis HOM05D003561 ORTHO05D004351 1.8e-184 650.2 677 51.4
PGSC0003DMG400013016 Solanum tuberosum HOM05D003561 ORTHO05D004351 1.8e-184 650.2 676 53.3
EL10Ac6g15669 Beta vulgaris HOM05D003561 ORTHO05D004351 7.6e-183 644.8 676 51.3
AUR62003959 Chenopodium quinoa HOM05D003561 ORTHO05D004351 7.6e-183 644.8 676 52.1
Cpa.g.sc292.9 Carica papaya HOM05D003561 ORTHO05D004351 1.3e-182 644.0 559 60.8
FAN26G2049 Fragaria x ananassa HOM05D003561 ORTHO05D004351 1.7e-182 643.7 675 51.4
A01p04120 Brassica napus HOM05D003561 ORTHO05D004351 1.4e-181 640.6 673 52.5
Ah.03g146260 Amaranthus hybridus HOM05D003561 ORTHO05D004351 1.9e-181 640.2 675 51.4
FAN19G0232 Fragaria x ananassa HOM05D003561 ORTHO05D004351 2.5e-181 639.8 675 51.3
BraA01t00401Z Brassica rapa HOM05D003561 ORTHO05D004351 3.2e-181 639.4 673 52.3
FvH4_1g17060 Fragaria vesca HOM05D003561 ORTHO05D004351 3.2e-181 639.4 676 50.9
Eucgr.H02268 Eucalyptus grandis HOM05D003561 ORTHO05D004351 7.1e-181 638.3 674 49.9
Thhalv10024491m.g Eutrema salsugineum HOM05D003561 ORTHO05D004351 2.7e-180 636.3 677 52.4
FAN28G0575 Fragaria x ananassa HOM05D003561 ORTHO05D004351 1.0e-179 634.4 675 50.8
BcaNung04991 Brassica carinata HOM05D003561 ORTHO05D004351 1.9e-178 630.2 673 51.4
AL7G16990 Arabidopsis lyrata HOM05D003561 ORTHO05D004351 2.5e-178 629.8 678 52.4
C01p04490 Brassica napus HOM05D003561 ORTHO05D004351 5.7e-178 628.6 673 51.3
BolC1t00435H Brassica oleracea HOM05D003561 ORTHO05D004351 5.7e-178 628.6 673 51.3
Carub.0007s0608 Capsella rubella HOM05D003561 ORTHO05D004351 9.7e-178 627.9 679 52.3
MD02G1180800 Malus domestica HOM05D003561 ORTHO05D004351 1.1e-176 624.4 674 50.0
CARHR242490 Cardamine hirsuta HOM05D003561 ORTHO05D004351 7.7e-175 618.2 679 52.1
ECA238G3157 Erigeron canadensis HOM05D003561 ORTHO05D004351 2.9e-174 616.3 671 49.8
Hund13924 Selenicereus undatus HOM05D003561 ORTHO05D004351 8.5e-174 614.8 673 49.5
Cc07_g06660 Coffea canephora HOM05D003561 ORTHO05D004351 1.4e-173 614.0 676 49.6
DCAR_010841 Daucus carota HOM05D003561 ORTHO05D004351 1.4e-173 614.0 652 50.8
THA.LOC104819541 Tarenaya hassleriana HOM05D003561 ORTHO05D004351 3.2e-173 612.8 674 50.7
Rhsim10G0161500 Rhododendron simsii HOM05D003561 ORTHO05D004351 4.6e-172 609.0 657 53.9
Sp7g32080 Schrenkiella parvula HOM05D003561 ORTHO05D004351 4.6e-172 609.0 676 50.1
AT4G34280 Arabidopsis thaliana HOM05D003561 ORTHO05D004351 3.9e-171 605.9 677 50.5
HanXRQChr14g0449611 Helianthus annuus HOM05D003561 ORTHO05D004351 6.7e-171 605.1 676 49.0
BcaNung04160 Brassica carinata HOM05D003561 ORTHO05D004351 1.1e-168 597.8 672 49.9
Lsat_1_v5_gn_2_83541 Lactuca sativa HOM05D003561 ORTHO05D004351 5.3e-168 595.5 683 46.6
Dinv30056 Davidia involucrata HOM05D003561 ORTHO05D004351 1.5e-167 594.0 596 54.7
AUR62031283 Chenopodium quinoa HOM05D003561 ORTHO05D004351 4.7e-164 582.4 554 55.1
Peaxi162Scf00449g00016 Petunia axillaris HOM05D003561 ORTHO05D004351 1.8e-160 570.5 586 53.8
vmacro05379 Vaccinium macrocarpon HOM05D003561 ORTHO05D004351 4.5e-159 565.8 582 53.8
AUR62038271 Chenopodium quinoa HOM05D003561 ORTHO05D004351 4.0e-155 552.7 650 48.2
SEGI_28319 Sequoiadendron giganteum HOM05D003561 ORTHO05D004351 7.4e-154 548.5 809 41.5
SEGI_36307 Sequoiadendron giganteum HOM05D003561 ORTHO05D004351 1.4e-152 544.3 766 42.7
Rhsim10G0162500 Rhododendron simsii HOM05D003561 ORTHO05D004351 9.1e-144 515.0 408 67.6
RcHm_v2.0_Chr6g0254291 Rosa chinensis HOM05D003561 ORTHO05D004351 1.7e-137 494.2 376 67.0
Oeu003572.1 Olea europaea HOM05D003561 ORTHO05D004351 1.2e-135 488.0 664 44.7
Pp3c22_17660 Physcomitrium patens HOM05D003561 ORTHO05D004351 1.4e-131 474.6 875 35.3
Pp3c18_4410 Physcomitrium patens HOM05D003561 ORTHO05D004351 1.5e-130 471.1 860 36.2
RcHm_v2.0_Chr6g0254371 Rosa chinensis HOM05D003561 ORTHO05D004351 3.1e-123 446.8 430 57.7
AagrBONN_evm.TU.Sc2ySwM_111.1 Anthoceros agrestis HOM05D003561 ORTHO05D004351 1.4e-115 421.4 625 41.4
Atru.chr3.215 Acer truncatum HOM05D003561 ORTHO05D004351 1.3e-113 414.8 307 67.1
SMO145G0124 Selaginella moellendorffii HOM05D003561 ORTHO05D004351 1.6e-100 371.3 569 40.6
Rhsim05G0089000 Rhododendron simsii HOM05D003561 ORTHO05D000355 7.1e-96 355.9 238 76.5
SalBow1G5992 Salvia bowleyana HOM05D003561 ORTHO05D004351 4.6e-95 353.2 330 56.7
SGA_v2.0_scaffold143G35782 Striga asiatica HOM05D003561 ORTHO05D004351 2.0e-90 337.8 309 56.3
Atru.chr3.214 Acer truncatum HOM05D003561 ORTHO05D004351 1.4e-88 331.6 356 51.4
Cpa.g.sc6.62 Carica papaya HOM05D003561 ORTHO05D004351 1.5e-82 311.6 202 72.8
PRCOL_00006635 Prasinoderma coloniale HOM05D003561 ORTHO05D004351 2.4e-80 304.3 377 44.6
AagrBONN_evm.TU.Sc2ySwM_340.381 Anthoceros agrestis HOM05D003561 ORTHO05D004351 3.5e-71 273.9 706 31.3
Cpa.g.sc6.61 Carica papaya HOM05D003561 ORTHO05D004351 1.8e-70 271.6 341 46.0
Rhsim10G0161900 Rhododendron simsii HOM05D003561 ORTHO05D000355 2.1e-68 264.6 216 65.7
CSS0044953 Camellia sinensis var. sinensis HOM05D003561 ORTHO05D004351 3.8e-57 227.3 205 58.0
RcHm_v2.0_Chr6g0254361 Rosa chinensis HOM05D003561 ORTHO05D004351 3.9e-54 217.2 149 70.5
RcHm_v2.0_Chr6g0254281 Rosa chinensis HOM05D003561 ORTHO05D004351 3.8e-49 200.7 140 69.3
C09p44740 Brassica napus HOM05D003561 ORTHO05D004351 2.1e-47 194.9 193 49.2
PGSC0003DMG400026677 Solanum tuberosum HOM05D003561 ORTHO05D004351 1.0e-46 192.6 147 62.6
Migut.H00379 Erythranthe guttata HOM05D003561 ORTHO05D004351 6.3e-44 183.3 141 63.8
BolC2t11906H Brassica oleracea HOM05D003561 ORTHO05D004351 5.2e-38 163.7 157 52.9
BolC3t20255H Brassica oleracea HOM05D003561 ORTHO05D004351 1.5e-37 162.2 157 52.9
BolC9t55360H Brassica oleracea HOM05D003561 ORTHO05D004351 2.0e-37 161.8 157 52.9
C02p15790 Brassica napus HOM05D003561 ORTHO05D004351 1.1e-35 156.0 157 52.2
Sc07g0000620 Simmondsia chinensis HOM05D003561 ORTHO05D004351 8.0e-31 139.8 300 30.7
Sabra07G0045400 Salix brachista HOM05D003561 ORTHO05D004351 2.9e-25 121.3 116 50.9
QL11p032339 Quercus lobata HOM05D003561 ORTHO05D004351 1.5e-24 119.0 115 60.9
BcaC03g17819 Brassica carinata HOM05D003561 ORTHO05D004351 4.2e-24 117.5 205 34.6
C09p50480 Brassica napus HOM05D003561 ORTHO05D004351 4.0e-22 110.9 97 55.7
C02p58430 Brassica napus HOM05D003561 ORTHO05D004351 3.4e-21 107.8 110 44.5
Oeu027122.1 Olea europaea HOM05D003561 ORTHO05D004351 2.4e-19 101.7 56 78.6
Lj9C47T4 Lonicera japonica HOM05D003561 ORTHO05D004351 2.3e-17 95.1 107 45.8
Lj9C43T3 Lonicera japonica HOM05D003561 ORTHO05D004351 3.6e-15 87.8 103 44.7
Solyc01g067990.1 Solanum lycopersicum HOM05D003561 ORTHO05D004351 1.0e-14 86.3 157 36.3
DCAR_017864 Daucus carota HOM05D003561 ORTHO05D004351 5.2e-14 84.0 45 86.7
Sc07g0000630 Simmondsia chinensis HOM05D003561 ORTHO05D004351 4.1e-11 74.3 41 80.5
FAN23G0469 Fragaria x ananassa HOM05D000001 ORTHO05D000003 9.2e-11 73.2 69 49.3
Peaxi162Scf00449g00015 Petunia axillaris HOM05D003561 ORTHO05D306215 2.1e-07 62.0 89 39.3
C09p24450 Brassica napus HOM05D003561 ORTHO05D004351 4.7e-07 60.8 69 44.9


User provided reference genes

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