Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037579 Camellia sinensis var. sinensis HOM05D008087 ORTHO05D010187 3.2e-105 385.2 209 100.0
CSS0002060 Camellia sinensis var. sinensis HOM05D008087 ORTHO05D010187 1.5e-102 376.3 209 97.6
QL11p000704 Quercus lobata HOM05D008087 ORTHO05D010187 3.5e-83 312.0 208 78.8
Nitab4.5_0002966g0020 Nicotiana tabacum HOM05D008087 ORTHO05D010187 2.9e-82 308.9 208 79.3
Lj4P912T21 Lonicera japonica HOM05D008087 ORTHO05D010187 8.6e-82 307.4 210 78.1
Hma1.2p1_0179F.1_g079550 Hydrangea macrophylla HOM05D008087 ORTHO05D010187 2.5e-81 305.8 209 78.5
CSS0034066 Camellia sinensis var. sinensis HOM05D008087 ORTHO05D010187 3.3e-81 305.4 169 96.4
Cfa002992 Carpinus fangiana HOM05D008087 ORTHO05D010187 7.2e-81 304.3 209 78.9
Manes.16G095600 Manihot esculenta HOM05D008087 ORTHO05D010187 2.1e-80 302.8 209 76.1
Ciclev10009482m.g Citrus clementina HOM05D008087 ORTHO05D010187 4.7e-80 301.6 209 77.5
TWI34G0776 Tripterygium wilfordii HOM05D008087 ORTHO05D010187 4.0e-79 298.5 209 74.6
MSTRG.19463 Avicennia marina HOM05D008087 ORTHO05D010187 8.9e-79 297.4 203 77.8
Sabra18G0058300 Salix brachista HOM05D008087 ORTHO05D010187 2.0e-78 296.2 211 76.8
TAR383G0588 Trochodendron aralioides HOM05D008087 ORTHO05D010187 4.4e-78 295.0 209 75.6
Potri.018G065700 Populus trichocarpa HOM05D008087 ORTHO05D010187 5.7e-78 294.7 211 76.3
Thecc.09G077500 Theobroma cacao HOM05D008087 ORTHO05D010187 7.5e-78 294.3 209 76.1
Cc06_g12130 Coffea canephora HOM05D008087 ORTHO05D010187 1.7e-77 293.1 209 75.1
Gorai.010G088200 Gossypium raimondii HOM05D008087 ORTHO05D010187 4.9e-77 291.6 209 76.6
GSVIVG01015086001 Vitis vinifera HOM05D004023 ORTHO05D004681 6.3e-77 291.2 200 77.5
COL.COLO4_18101 Corchorus olitorius HOM05D008087 ORTHO05D010187 1.1e-76 290.4 209 76.1
PGSC0003DMG400013001 Solanum tuberosum HOM05D008087 ORTHO05D010187 1.4e-76 290.0 209 74.2
Gohir.A06G076300 Gossypium hirsutum HOM05D008087 ORTHO05D010187 5.4e-76 288.1 209 75.6
MD15G1217200 Malus domestica HOM05D008087 ORTHO05D010187 5.4e-76 288.1 212 74.1
Prupe.7G199300 Prunus persica HOM05D008087 ORTHO05D010187 5.4e-76 288.1 212 74.5
Solyc07g041770.1 Solanum lycopersicum HOM05D008087 ORTHO05D010187 5.4e-76 288.1 209 73.2
Gohir.D06G075300 Gossypium hirsutum HOM05D008087 ORTHO05D010187 9.2e-76 287.3 209 76.1
CiPaw.03G206800 Carya illinoinensis HOM05D008087 ORTHO05D010187 1.2e-75 287.0 210 75.2
DCAR_024749 Daucus carota HOM05D008087 ORTHO05D010187 2.0e-75 286.2 206 74.8
Rhsim05G0007800 Rhododendron simsii HOM05D008087 ORTHO05D010187 2.7e-75 285.8 209 76.1
Glyma.13G110250 Glycine max HOM05D008087 ORTHO05D010187 1.7e-74 283.1 206 74.3
Oeu049121.1 Olea europaea HOM05D008087 ORTHO05D010187 1.7e-74 283.1 207 73.9
Lj4g0020355 Lotus japonicus HOM05D008087 ORTHO05D010187 2.3e-74 282.7 207 73.9
Phvul.003G131000 Phaseolus vulgaris HOM05D008087 ORTHO05D010187 2.9e-74 282.3 207 74.4
VMungo1215G2436 Vigna mungo HOM05D008087 ORTHO05D010187 3.9e-74 282.0 207 74.4
Sopen07g021260 Solanum pennellii HOM05D008087 ORTHO05D010187 5.0e-74 281.6 209 72.2
Duzib168G2281 Durio zibethinus HOM05D008087 ORTHO05D010187 8.6e-74 280.8 209 74.2
SalBow6G2426 Salvia bowleyana HOM05D008087 ORTHO05D010187 1.9e-73 279.6 206 72.8
Glyma.17G049450 Glycine max HOM05D008087 ORTHO05D010187 5.6e-73 278.1 206 73.3
Nn8g38653 Nelumbo nucifera HOM05D008087 ORTHO05D010187 7.3e-73 277.7 209 72.7
Cpa.g.sc28.44 Carica papaya HOM05D008087 ORTHO05D010187 1.2e-72 276.9 210 72.9
Eucgr.C03187 Eucalyptus grandis HOM05D008087 ORTHO05D010187 1.8e-71 273.1 209 69.4
CANSAT56G3514 Cannabis sativa HOM05D008087 ORTHO05D010187 5.2e-71 271.6 212 70.8
Lalb_Chr07g0181171 Lupinus albus HOM05D008087 ORTHO05D010187 7.5e-70 267.7 207 70.0
RcHm_v2.0_Chr2g0094891 Rosa chinensis HOM05D008087 ORTHO05D010187 1.7e-69 266.5 211 71.1
Migut.J00928 Erythranthe guttata HOM05D008087 ORTHO05D010187 4.1e-68 261.9 205 71.2
AUR62028937 Chenopodium quinoa HOM05D008087 ORTHO05D010187 1.2e-67 260.4 210 68.6
arahy.Tifrunner.gnm1.ann1.TB6UZQ Arachis hypogaea HOM05D008087 ORTHO05D010187 1.6e-67 260.0 207 68.6
Psat4g017680 Pisum sativum HOM05D008087 ORTHO05D010187 7.8e-67 257.7 209 70.3
TPR.G12579 Trifolium pratense HOM05D008087 ORTHO05D010187 8.6e-66 254.2 207 68.1
Atru.chr7.1701 Acer truncatum HOM05D002335 ORTHO05D006692 1.5e-65 253.4 182 73.6
PSO135G0253 Papaver somniferum HOM05D008087 ORTHO05D010187 8.0e-64 247.7 208 63.9
MBI19_g11825_MAGBIO Magnolia biondii HOM05D008087 ORTHO05D010187 1.2e-62 243.8 209 62.7
Aqoxy1G01322 Aquilegia oxysepala HOM05D008087 ORTHO05D010187 4.6e-59 231.9 207 61.8
Sc08g0008880 Simmondsia chinensis HOM05D008087 ORTHO05D010187 4.6e-59 231.9 209 64.1
Medtr4g125370 Medicago truncatula HOM05D008087 ORTHO05D010187 1.3e-58 230.3 207 64.7
PGR044G2582 Punica granatum HOM05D008087 ORTHO05D010187 1.3e-58 230.3 209 64.1
Duzib187G0811 Durio zibethinus HOM05D008087 ORTHO05D010187 7.3e-57 224.6 159 73.6
Eucgr.L02787 Eucalyptus grandis HOM05D008087 ORTHO05D010187 2.8e-56 222.6 209 60.8
Ca_21320_v3 Cicer arietinum L. HOM05D008087 ORTHO05D010187 1.2e-51 207.2 207 58.9
Lsat_1_v5_gn_7_35101 Lactuca sativa HOM05D004023 ORTHO05D004681 2.7e-51 206.1 195 65.1
Ah.09g231600 Amaranthus hybridus HOM05D008087 ORTHO05D010187 6.6e-50 201.4 184 62.5
AL5G20930 Arabidopsis lyrata HOM05D008087 ORTHO05D010187 2.0e-46 189.9 204 54.9
AT3G42725 Arabidopsis thaliana HOM05D008087 ORTHO05D010187 8.4e-45 184.5 204 53.9
Nitab4.5_0000343g0200 Nicotiana tabacum HOM05D008087 ORTHO05D010187 1.1e-39 167.5 106 79.2
Peaxi162Scf00127g00202 Petunia axillaris HOM05D008087 ORTHO05D010187 3.1e-39 166.0 106 78.3
THA.LOC104811009 Tarenaya hassleriana HOM05D008087 ORTHO05D010187 7.6e-38 161.4 209 47.8
PSO724G0984 Papaver somniferum HOM05D008087 ORTHO05D010187 1.6e-27 127.1 106 62.3
Ah.14g084950 Amaranthus hybridus HOM05D008087 ORTHO05D010187 1.8e-26 123.6 112 63.4
Zm00001eb005810 Zea mays HOM05D008087 ORTHO05D010187 1.8e-26 123.6 207 42.5
PGR044G2297 Punica granatum HOM05D008087 ORTHO05D010187 3.0e-26 122.9 127 55.9
ATR0598G047 Amborella trichopoda HOM05D008087 ORTHO05D010187 3.8e-21 105.9 116 48.3
MD15G1091800 Malus domestica HOM05D008087 ORTHO05D010187 1.1e-20 104.4 81 65.4
Dinv42391 Davidia involucrata HOM05D002335 ORTHO05D006692 4.2e-20 102.4 66 77.3
HPP92_026302 Vanilla planifolia HOM05D008087 ORTHO05D010187 6.0e-19 98.6 198 38.4
SMO358G0701 Selaginella moellendorffii HOM05D016812 ORTHO05D010187 1.3e-13 80.9 188 32.4
ECA240G4665 Erigeron canadensis HOM05D002335 ORTHO05D006692 2.9e-13 79.7 54 74.1
Mapoly0038s0092 Marchantia polymorpha HOM05D016812 ORTHO05D010187 7.4e-09 65.1 191 29.8
Aa31LG4G13290 Aethionema arabicum HOM05D008087 ORTHO05D010187 9.7e-09 64.7 121 41.3
Ciclev10030215m.g Citrus clementina HOM05D008087 ORTHO05D010187 2.2e-08 63.5 168 33.9
SEGI_14451 Sequoiadendron giganteum HOM05D003033 ORTHO05D003475 4.8e-08 62.4 192 28.6
Pp3c10_8870 Physcomitrium patens HOM05D016812 ORTHO05D024947 3.1e-07 59.7 207 27.1


User provided reference genes

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