Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037566 Camellia sinensis var. sinensis HOM05D003663 ORTHO05D005327 1.1e-101 373.6 246 100.0
Hma1.2p1_1680F.1_g297170 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 1.5e-53 213.8 190 63.2
Rhsim09G0213000 Rhododendron simsii HOM05D003663 ORTHO05D005327 1.4e-51 207.2 184 62.5
TAR374G1477 Trochodendron aralioides HOM05D003663 ORTHO05D005327 2.7e-50 203.0 182 63.7
vmacro22176 Vaccinium macrocarpon HOM05D003663 ORTHO05D005327 3.5e-50 202.6 185 60.5
Oeu027885.1 Olea europaea HOM05D003663 ORTHO05D005327 7.8e-50 201.4 180 62.8
Duzib177G0557 Durio zibethinus HOM05D003663 ORTHO05D005327 1.0e-49 201.1 189 61.9
TWI34G0428 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 1.7e-49 200.3 182 62.1
Potri.019G049600 Populus trichocarpa HOM05D003663 ORTHO05D005327 6.6e-49 198.4 183 59.6
Duzib106G1874 Durio zibethinus HOM05D003663 ORTHO05D005327 1.1e-48 197.6 184 62.0
Rhsim03G0221600 Rhododendron simsii HOM05D003663 ORTHO05D005327 1.5e-48 197.2 157 68.2
Nn3g19378 Nelumbo nucifera HOM05D003663 ORTHO05D005327 2.5e-48 196.4 172 64.0
Sabra19G0059300 Salix brachista HOM05D003663 ORTHO05D005327 7.3e-48 194.9 175 64.0
Phvul.003G226500 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 1.4e-46 190.7 181 55.8
Haze_00422 Corylus avellana HOM05D003663 ORTHO05D005327 1.8e-46 190.3 174 64.9
Lsat_1_v5_gn_2_136720 Lactuca sativa HOM05D003663 ORTHO05D005327 2.3e-46 189.9 178 57.3
Lj3P887T57 Lonicera japonica HOM05D003663 ORTHO05D005327 3.1e-46 189.5 146 69.2
AUR62002065 Chenopodium quinoa HOM05D003663 ORTHO05D005327 5.2e-46 188.7 172 62.2
Manes.09G126900 Manihot esculenta HOM05D003663 ORTHO05D005327 5.2e-46 188.7 182 59.9
Oeu060390.1 Olea europaea HOM05D002083 ORTHO05D000332 6.8e-46 188.3 158 65.2
Migut.F00942 Erythranthe guttata HOM05D003663 ORTHO05D005327 8.9e-46 188.0 177 57.1
QL09p023778 Quercus lobata HOM05D003663 ORTHO05D005327 8.9e-46 188.0 171 62.6
CiPaw.06G032900 Carya illinoinensis HOM05D003663 ORTHO05D005327 2.0e-45 186.8 187 58.8
Lalb_Chr05g0220821 Lupinus albus HOM05D003663 ORTHO05D005327 5.8e-45 185.3 179 58.7
VMungo0251G1526 Vigna mungo HOM05D003663 ORTHO05D005327 2.9e-44 183.0 184 57.1
Cfa016035 Carpinus fangiana HOM05D003663 ORTHO05D005327 4.9e-44 182.2 172 64.0
Sc13g0010870 Simmondsia chinensis HOM05D003663 ORTHO05D005327 4.9e-44 182.2 174 59.8
MBI04_g20973_MAGBIO Magnolia biondii HOM05D003663 ORTHO05D005327 6.4e-44 181.8 185 58.9
CAN.G65.131 Capsicum annuum HOM05D003663 ORTHO05D005327 8.3e-44 181.4 183 55.7
Glyma.17G149700 Glycine max HOM05D003663 ORTHO05D005327 1.9e-43 180.3 182 55.5
Peaxi162Scf00815g00311 Petunia axillaris HOM05D003663 ORTHO05D005327 1.9e-43 180.3 181 56.4
Duzib128G0448 Durio zibethinus HOM05D003663 ORTHO05D005327 2.4e-43 179.9 188 56.4
EL10Ac3g05074 Beta vulgaris HOM05D003663 ORTHO05D005327 4.1e-43 179.1 178 59.6
Aqoxy3G02161 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 9.2e-43 177.9 173 56.1
Gorai.007G348900 Gossypium raimondii HOM05D003663 ORTHO05D005327 1.2e-42 177.6 151 62.3
PGSC0003DMG400027034 Solanum tuberosum HOM05D003663 ORTHO05D005327 1.6e-42 177.2 186 53.8
Gohir.A11G303600 Gossypium hirsutum HOM05D003663 ORTHO05D005327 3.5e-42 176.0 181 55.2
Gohir.D11G318900 Gossypium hirsutum HOM05D003663 ORTHO05D005327 3.5e-42 176.0 177 57.1
HanXRQChr14g0462981 Helianthus annuus HOM05D003663 ORTHO05D005327 3.5e-42 176.0 173 54.9
COL.COLO4_06064 Corchorus olitorius HOM05D003663 ORTHO05D005327 1.0e-41 174.5 179 59.2
Sopen06g029160 Solanum pennellii HOM05D003663 ORTHO05D005327 1.3e-41 174.1 177 54.8
Ah.13g072750 Amaranthus hybridus HOM05D003663 ORTHO05D005327 2.3e-41 173.3 176 58.0
CANSAT21G0248 Cannabis sativa HOM05D003663 ORTHO05D005327 3.0e-41 172.9 174 55.7
Nitab4.5_0001762g0070 Nicotiana tabacum HOM05D003663 ORTHO05D005327 3.9e-41 172.6 184 52.2
Ciclev10021912m.g Citrus clementina HOM05D003663 ORTHO05D005327 1.5e-40 170.6 152 60.5
SalBow2G0094 Salvia bowleyana HOM05D003663 ORTHO05D005327 2.5e-40 169.9 167 53.9
SGA_v2.0_scaffold50G18444 Striga asiatica HOM05D003663 ORTHO05D005327 4.3e-40 169.1 180 52.2
Nitab4.5_0000021g0580 Nicotiana tabacum HOM05D003663 ORTHO05D005327 7.3e-40 168.3 180 52.2
Cpa.g.sc504.5 Carica papaya HOM05D003663 ORTHO05D005327 2.1e-39 166.8 175 55.4
ECA233G1163 Erigeron canadensis HOM05D003663 ORTHO05D005327 2.1e-39 166.8 153 54.9
Lj4g0026545 Lotus japonicus HOM05D003663 ORTHO05D005327 2.1e-39 166.8 193 52.8
Medtr4g099150 Medicago truncatula HOM05D003663 ORTHO05D005327 8.1e-39 164.9 160 56.2
TPR.G17125 Trifolium pratense HOM05D003663 ORTHO05D005327 1.8e-38 163.7 186 50.5
Eucgr.K00086 Eucalyptus grandis HOM05D003663 ORTHO05D005327 5.2e-38 162.2 174 50.6
PSO063G6858 Papaver somniferum HOM05D003663 ORTHO05D005327 6.8e-38 161.8 190 49.5
Psat4g076520 Pisum sativum HOM05D003663 ORTHO05D005327 6.8e-38 161.8 189 51.3
DCAR_010543 Daucus carota HOM05D003663 ORTHO05D005327 2.0e-37 160.2 184 51.1
PSO782G5365 Papaver somniferum HOM05D003663 ORTHO05D005327 2.0e-37 160.2 190 49.5
Cc00_g28240 Coffea canephora HOM05D003663 ORTHO05D005327 7.6e-37 158.3 159 52.8
BraA02t05351Z Brassica rapa HOM05D003663 ORTHO05D005327 2.9e-36 156.4 152 55.9
BcaC03g18525 Brassica carinata HOM05D003663 ORTHO05D005327 4.9e-36 155.6 152 55.3
C02p08670 Brassica napus HOM05D003663 ORTHO05D005327 4.9e-36 155.6 152 55.3
Prupe.2G326500 Prunus persica HOM05D003663 ORTHO05D005327 4.9e-36 155.6 149 56.4
BcaNung00434 Brassica carinata HOM05D003663 ORTHO05D005327 6.4e-36 155.2 152 54.6
A02p03870 Brassica napus HOM05D003663 ORTHO05D005327 6.4e-36 155.2 152 55.3
BolC2t06783H Brassica oleracea HOM05D003663 ORTHO05D005327 6.4e-36 155.2 169 51.5
PGR142G2930 Punica granatum HOM05D003663 ORTHO05D005327 6.4e-36 155.2 187 48.1
Carub.0006s1513 Capsella rubella HOM05D003663 ORTHO05D005327 1.9e-35 153.7 183 48.1
CARHR196240 Cardamine hirsuta HOM05D003663 ORTHO05D005327 2.4e-35 153.3 173 52.0
AL6G27920 Arabidopsis lyrata HOM05D003663 ORTHO05D005327 4.1e-35 152.5 173 50.9
Sp6g27190 Schrenkiella parvula HOM05D003663 ORTHO05D005327 5.4e-35 152.1 151 52.3
AT5G16920 Arabidopsis thaliana HOM05D003663 ORTHO05D005327 9.2e-35 151.4 183 49.2
Thhalv10014405m.g Eutrema salsugineum HOM05D003663 ORTHO05D005327 2.3e-33 146.7 175 48.0
Actinidia33794 Actinidia chinensis HOM05D003663 ORTHO05D005327 8.6e-33 144.8 166 51.2
THA.LOC104827213 Tarenaya hassleriana HOM05D003663 ORTHO05D005327 1.2e-31 141.0 183 46.4
Thecc.05G213800 Theobroma cacao HOM05D003663 ORTHO05D005327 2.4e-30 136.7 180 49.4
Os12g0233900 Oryza sativa ssp. japonica HOM05D003663 ORTHO05D005327 2.2e-28 130.2 178 41.6
ATR0829G139 Amborella trichopoda HOM05D003663 ORTHO05D005327 1.1e-27 127.9 154 44.2
Hma1.2p1_1267F.1_g271530 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 4.6e-26 122.5 160 43.1
Hma1.2p1_2614F.1_g325410 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 6.0e-26 122.1 164 42.1
Phvul.008G285700 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 6.0e-26 122.1 158 43.0
Nn1g01862 Nelumbo nucifera HOM05D003663 ORTHO05D005327 1.3e-25 120.9 119 57.1
LjContig00081g0009748 Lotus japonicus HOM05D003663 ORTHO05D005327 3.9e-25 119.4 155 41.9
Psat2g004440 Pisum sativum HOM05D003663 ORTHO05D005327 6.6e-25 118.6 180 39.4
TAR627G0054 Trochodendron aralioides HOM05D003663 ORTHO05D005327 6.6e-25 118.6 151 41.7
VMungo0647G1338 Vigna mungo HOM05D003663 ORTHO05D005327 6.6e-25 118.6 177 40.1
Ca_06459_v3 Cicer arietinum L. HOM05D003663 ORTHO05D005327 1.1e-24 117.9 178 37.6
Glyma.14G007200 Glycine max HOM05D003663 ORTHO05D005327 1.9e-24 117.1 180 37.2
Medtr5g097370 Medicago truncatula HOM05D003663 ORTHO05D005327 1.9e-24 117.1 155 43.2
arahy.Tifrunner.gnm1.ann1.5NF29Y Arachis hypogaea HOM05D003663 ORTHO05D005327 4.3e-24 115.9 130 43.8
arahy.Tifrunner.gnm1.ann1.CR9YGF Arachis hypogaea HOM05D003663 ORTHO05D005327 4.3e-24 115.9 130 43.8
arahy.Tifrunner.gnm1.ann1.8QBK2E Arachis hypogaea HOM05D003663 ORTHO05D005327 3.6e-23 112.8 131 41.2
arahy.Tifrunner.gnm1.ann1.P7DY53 Arachis hypogaea HOM05D003663 ORTHO05D005327 3.6e-23 112.8 131 41.2
TPR.G1287 Trifolium pratense HOM05D003663 ORTHO05D005327 3.6e-23 112.8 157 39.5
Nn1g03229 Nelumbo nucifera HOM05D003663 ORTHO05D005327 4.8e-23 112.5 153 40.5
Lj6g0026147 Lotus japonicus HOM05D003663 ORTHO05D005327 1.1e-22 111.3 154 39.0
VMungo0540G0424 Vigna mungo HOM05D003663 ORTHO05D005327 1.4e-22 110.9 130 43.8
Aqoxy3G02718 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 1.8e-22 110.5 160 36.2
Lalb_Chr17g0349111 Lupinus albus HOM05D003663 ORTHO05D005327 1.8e-22 110.5 146 41.1
Actinidia34308 Actinidia chinensis HOM05D003663 ORTHO05D005327 3.1e-22 109.8 79 74.7
Prupe.4G006800 Prunus persica HOM05D003663 ORTHO05D005327 3.1e-22 109.8 130 40.8
TPR.G10569 Trifolium pratense HOM05D003663 ORTHO05D005327 3.1e-22 109.8 151 38.4
Ca_00744_v3 Cicer arietinum L. HOM05D003663 ORTHO05D005327 6.9e-22 108.6 151 39.1
Lalb_Chr16g0386341 Lupinus albus HOM05D003663 ORTHO05D005327 6.9e-22 108.6 102 58.8
ATR0624G116 Amborella trichopoda HOM05D003663 ORTHO05D005327 1.2e-21 107.8 155 36.8
Lalb_Chr20g0119391 Lupinus albus HOM05D003663 ORTHO05D005327 2.6e-21 106.7 163 37.4
TWI36G0551 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 2.6e-21 106.7 146 40.4
Phvul.006G141400 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 4.5e-21 105.9 151 37.7
ClCG02G002710 Citrullus lanatus HOM05D003663 ORTHO05D005327 1.7e-20 104.0 147 42.2
PGR142G2458 Punica granatum HOM05D003663 ORTHO05D005327 1.7e-20 104.0 163 38.0
FAN25G1738 Fragaria x ananassa HOM05D003663 ORTHO05D005327 2.2e-20 103.6 132 40.2
FvH4_3g00560 Fragaria vesca HOM05D003663 ORTHO05D005327 3.8e-20 102.8 132 39.4
Sed0003500 Sechium edule HOM05D003663 ORTHO05D005327 8.4e-20 101.7 151 41.1
Psat1g178200 Pisum sativum HOM05D003663 ORTHO05D005327 1.1e-19 101.3 151 35.8
MELO3C024107.2 Cucumis melo HOM05D003663 ORTHO05D005327 1.4e-19 100.9 151 40.4
Glyma.09G012100 Glycine max HOM05D003663 ORTHO05D005327 1.4e-19 100.9 157 37.6
Aqoxy1G04228 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 5.4e-19 99.0 131 42.0
C09p06370 Brassica napus HOM05D003663 ORTHO05D005327 7.1e-19 98.6 135 37.0
Ciclev10017620m.g Citrus clementina HOM05D003663 ORTHO05D005327 9.3e-19 98.2 156 38.5
CsaV3_7G023690 Cucumis sativus L. HOM05D003663 ORTHO05D005327 9.3e-19 98.2 140 40.0
BcaC04g23626 Brassica carinata HOM05D003663 ORTHO05D005327 1.2e-18 97.8 135 37.0
Thhalv10005288m.g Eutrema salsugineum HOM05D003663 ORTHO05D005327 1.6e-18 97.4 135 37.0
TWI38G0283 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 1.6e-18 97.4 135 37.0
Eucgr.L03441 Eucalyptus grandis HOM05D003663 ORTHO05D005327 3.5e-18 96.3 118 41.5
Aqoxy1G04227 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 1.3e-17 94.4 153 40.5
BcaB04g19727 Brassica carinata HOM05D003663 ORTHO05D005327 1.3e-17 94.4 135 35.6
CARHR186960 Cardamine hirsuta HOM05D003663 ORTHO05D005327 1.3e-17 94.4 135 39.3
PSO210G1796 Papaver somniferum HOM05D003663 ORTHO05D005327 1.3e-17 94.4 139 36.0
A09p05770 Brassica napus HOM05D003663 ORTHO05D005327 1.8e-17 94.0 153 34.6
BraA09t36218Z Brassica rapa HOM05D003663 ORTHO05D005327 1.8e-17 94.0 153 34.6
Sed0002316 Sechium edule HOM05D003663 ORTHO05D005327 3.0e-17 93.2 122 38.5
PSO302G0013 Papaver somniferum HOM05D003663 ORTHO05D005327 3.9e-17 92.8 159 33.3
BolC9t53556H Brassica oleracea HOM05D003663 ORTHO05D005327 5.1e-17 92.4 169 32.5
MELO3C028604.2 Cucumis melo HOM05D003663 ORTHO05D005327 5.1e-17 92.4 156 36.5
MD09G1122000 Malus domestica HOM05D003663 ORTHO05D005327 1.5e-16 90.9 134 37.3
Actinidia08745 Actinidia chinensis HOM05D000074 ORTHO05D006801 1.9e-16 90.5 86 65.1
Sed0016160 Sechium edule HOM05D003663 ORTHO05D005327 1.9e-16 90.5 129 41.9
THA.LOC104826655 Tarenaya hassleriana HOM05D003663 ORTHO05D005327 1.9e-16 90.5 151 36.4
AL6G38450 Arabidopsis lyrata HOM05D003663 ORTHO05D005327 2.5e-16 90.1 137 36.5
Carub.0006s2423 Capsella rubella HOM05D003663 ORTHO05D005327 4.3e-16 89.4 137 36.5
Aqoxy1G04229 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 5.6e-16 89.0 156 32.1
AT5G26730 Arabidopsis thaliana HOM05D003663 ORTHO05D005327 9.6e-16 88.2 137 35.8
BcaNung03959 Brassica carinata HOM05D003663 ORTHO05D005327 3.6e-15 86.3 138 36.2
Sed0020467 Sechium edule HOM05D003663 ORTHO05D005327 3.6e-15 86.3 122 35.2
Potri.006G016700 Populus trichocarpa HOM05D003663 ORTHO05D005327 8.1e-15 85.1 95 42.1
C07p41660 Brassica napus HOM05D003663 ORTHO05D005327 1.4e-14 84.3 155 36.1
BolC7t44701H Brassica oleracea HOM05D003663 ORTHO05D005327 1.4e-14 84.3 155 36.1
BcaNung02825 Brassica carinata HOM05D003663 ORTHO05D005327 1.8e-14 84.0 155 36.1
A06p36830 Brassica napus HOM05D003663 ORTHO05D005327 1.8e-14 84.0 155 36.1
BraA06t26609Z Brassica rapa HOM05D003663 ORTHO05D005327 1.8e-14 84.0 155 36.1
ClCG01G010650 Citrullus lanatus HOM05D003663 ORTHO05D005327 2.0e-13 80.5 122 33.6
RcHm_v2.0_Chr2g0156681 Rosa chinensis HOM05D003663 ORTHO05D005327 5.8e-13 79.0 110 31.8
Sp2g21370 Schrenkiella parvula HOM05D003663 ORTHO05D005327 1.3e-12 77.8 119 32.8
Prupe.3G201600 Prunus persica HOM05D003663 ORTHO05D005327 1.7e-12 77.4 125 33.6
Glyma.02G305800 Glycine max HOM05D003663 ORTHO05D005327 3.2e-11 73.2 104 37.5
Medtr2g026520 Medicago truncatula HOM05D003663 ORTHO05D005327 1.6e-10 70.9 113 37.2
BcaB04g19726 Brassica carinata HOM05D003663 ORTHO05D005327 2.7e-10 70.1 72 43.1
BcaB07g29963 Brassica carinata HOM05D003663 ORTHO05D005327 1.3e-09 67.8 91 36.3
CsaV3_7G002660 Cucumis sativus L. HOM05D003663 ORTHO05D005327 1.3e-09 67.8 119 37.8
A02p39370 Brassica napus HOM05D003663 ORTHO05D010021 3.9e-09 66.2 75 40.0
Mapoly0095s0061 Marchantia polymorpha HOM05D005423 ORTHO05D006223 1.9e-08 63.9 157 28.7
Potri.016G009000 Populus trichocarpa HOM05D003663 ORTHO05D005327 3.3e-08 63.2 60 48.3


User provided reference genes

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